BAC Information

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BAC

Clone NameB6Ng01-188G15
Chromosome13 (Build37)
Map Location 22,620,053 - 22,715,185
singlet/doubletdoublet
Overlap geneOTTMUSG00000000494, V1rh8, V1rh7
Upstream geneZfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11
Downstream geneLOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188G15.bB6Ng01-188G15.g
ACCGA012720GA012721
length1,1821,128
definitionB6Ng01-188G15.b B6Ng01-188G15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,714,008 - 22,715,185)(22,620,053 - 22,621,171)
sequence
gaattcctgcagtaaggatccaggctgtgaactagtacatctggaaacag
ctcatcttaactttgcctcagaactaagcagcaaagagcaacaatctttt
tcttttgtttggtatgattattttttggcttgctcttagaaaatcaggat
agatgaatacagtctacctcatatttgggaggtggggttaaacccaccat
gggaccatccatttatctcaacacaagtccatcctacctttcaacttaat
ttcctttatcatttctgacagactacttcagcagaaatgaatcatttatc
cagaggtccagaggctggactcaaatatgatttaaagttaggaaatagac
aacttgaaatagaggatgcccccggaaagctagtattaaacaaagagaga
aatgttagtatttgccatcagggcttggtgttatcgattacatcaacttt
ttcagactccaatctttaagtgttcattctaaaaatcaataatgaatgct
tattagttttttattaatgtctagagcttactttattatatgcagatatt
cagaacggtattgtgatttctaaaattcactggtataggcatcatttatg
catttatttgggaggcagttaaaaaggaataactgaaatttctggagtca
tgaagccacctaaaagaaacccagcaagaaggctagtttcctaaagttca
ggtatgatatcagaaagacaaagacatttaaggcaatcctgtgaggttag
caggaaggagccactgaagcatccaaattcctctgattctagaaaatgtg
cctgagaaatgaaaatggagcttttaaacatgaatagtaacatcctttca
gaggtctgagtcctcgaaacaccttgaactgatgtagaacaaagcattct
tcctgacaaacaggttggaaaagaaaaggtagaaggagacagctgacata
actgctgctcacaaggtctcacagagaaaaatgacaccatgacctcttag
atcggagagtccctgctcacaactgtgtcccacctatggatgctactgca
tacagaacagaataagaacccaatactcaaaatcttcatttattttcaag
gccagcactacacctcatttaatcacttcttccacctctctctcagcagc
aaccagcctagtacaaggtggcctccatgttc
gaattccatgcttttcatcccagaatttaggaggctgacacaagtggatt
tctgtgttcagggccaacctagtctttagagcaaagtctaggacacacaa
ggctacacagagaaaccctgtgattacaggattacagaaccctacatggc
aaggtggtcatttttgccaagctctaattttgtttagggagggtttgctt
gttgttctgttttggtttttttctcttcttgttttttttgaaacagagtc
ttactatttcaccatggatcgtatagaactggctatgtggaacaacctgg
actagaactcacagtgatctgccagcctctgcttccaaagtacgaggact
aaaggtattcagtaccacacctggcttatgggtagtcatttttaacaact
tccaatctgtaacacaatcattaagcattcactggtttacctttattaat
gaatacccctgagcttttgatggaagattacagcataattcagtaaacat
tagacacttgggattttatactgcttcctttagtgcattgacagaatcta
gtctcctcatatgtaatgaaagaaaaaaaattgaaaggcaataataacca
aagtcaaacattacctgcctcctagagagagcaaagagtggccagttctt
aggtgcaagacagtgttattatagtttctggcttcctgaggcctataggg
cagaaaaatctaaagcaatcacgtaataacaactaggatgtagaagatga
aaggccatgctgatgtctgagtactacactgagctgagcttgccctaccc
tttgcatgcagtggcagagctgcccccacctcttgccagtcaccagactc
aggagatctatccctgcccttctcctaggcagcaaggtaggagtggctct
ggtggggtgggtgcaagacagcttgtcagcttatcacaacttcagatttc
tgggcctcacacctccacctgaaccagcataataaggcctggcttccata
cctcatctgcctattgtggtgcatgggatgtaaggaagaaaataccctca
taatcacccaactcaccttctgcaagagggaagagcttagcgcagagaga
gtgcaccagagagctgttcatccctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22714008_22715185
seq2: B6Ng01-188G15.b_46_1227 (reverse)

seq1  GAACATGGA-GCAAACTTGTACTA-GCT-GTTGCTGCT--GAGAGAGGTG  45
      ||||||||| || | ||||||||| ||| |||||||||  ||||||||||
seq2  GAACATGGAGGCCACCTTGTACTAGGCTGGTTGCTGCTGAGAGAGAGGTG  50

seq1  GAAGAAGGTGATT-AATGAGTTGTTAGGTGCTGCCCT--GAAATAAATGA  92
      |||||| |||||| |||||| |||   |||||| |||   ||||||||||
seq2  GAAGAA-GTGATTAAATGAGGTGT--AGTGCTGGCCTTGAAAATAAATGA  97

seq1  AGATTTTGAGTTATTGGTTCTTAATCTG-TCTGTATGCAGTAGCATACAA  141
      |||||||||||  | |||||||| |||| ||||||||||||||||| | |
seq2  AGATTTTGAGTATTGGGTTCTTATTCTGTTCTGTATGCAGTAGCAT-CCA  146

seq1  TAGGTTGGGACACAGTTGTGAGCAGGGACTCTCCGATCTAAGAGGTCATG  191
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGG-TGGGACACAGTTGTGAGCAGGGACTCTCCGATCTAAGAGGTCATG  195

seq1  GTGTCATTTTTCTCTGTGAGACCTTGTGAGCAGCAGTTATGTCAGCTTGT  241
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGTCATTTTTCTCTGTGAGACCTTGTGAGCAGCAGTTATGTCAGC-TGT  244

seq1  CTCCTTCTACCTTTTCTTTTCCAACCTGTTTGTCAGGAAGAATGCTTTGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTACCTTTTCTTTTCCAACCTGTTTGTCAGGAAGAATGCTTTGT  294

seq1  TCTACATCAGTTCAAGGTGTTTCGAGGACTCAGACCTCTG-AAGGATGTT  340
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCTACATCAGTTCAAGGTGTTTCGAGGACTCAGACCTCTGAAAGGATGTT  344

seq1  ACTATTCATGTTTAAAAGCTCCATTTTCATTTCTCAGGCACATTTTCTAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCATGTTTAAAAGCTCCATTTTCATTTCTCAGGCACATTTTCTAG  394

seq1  AATCAGAGGAATTTGGATGCTTCAGTGGCTCCTTCCTGCTAACCTCACAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGAGGAATTTGGATGCTTCAGTGGCTCCTTCCTGCTAACCTCACAG  444

seq1  GATTGCCTTAAATGTCTTTGTCTTTCTGATATCATACCTGAACTTTAGGA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCCTTAAATGTCTTTGTCTTTCTGATATCATACCTGAACTTTAGGA  494

seq1  AACTAGCCTTCTTGCTGGGTTTCTTTTAGGTGGCTTCATGACTCCAGAAA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGCCTTCTTGCTGGGTTTCTTTTAGGTGGCTTCATGACTCCAGAAA  544

seq1  TTTCAGTTATTCCTTTTTAACTGCCTCCCAAATAAATGCATAAATGATGC  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGTTATTCCTTTTTAACTGCCTCCCAAATAAATGCATAAATGATGC  594

seq1  CTATACCAGTGAATTTTAGAAATCACAATACCGTTCTGAATATCTGCATA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCAGTGAATTTTAGAAATCACAATACCGTTCTGAATATCTGCATA  644

seq1  TAATAAAGTAAGCTCTAGACATTAATAAAAAACTAATAAGCATTCATTAT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGTAAGCTCTAGACATTAATAAAAAACTAATAAGCATTCATTAT  694

seq1  TGATTTTTAGAATGAACACTTAAAGATTGGAGTCTGAAAAAGTTGATGTA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTAGAATGAACACTTAAAGATTGGAGTCTGAAAAAGTTGATGTA  744

seq1  ATCGATAACACCAAGCCCTGATGGCAAATACTAACATTTCTCTCTTTGTT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATAACACCAAGCCCTGATGGCAAATACTAACATTTCTCTCTTTGTT  794

seq1  TAATACTAGCTTTCCGGGGGCATCCTCTATTTCAAGTTGTCTATTTCCTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTAGCTTTCCGGGGGCATCCTCTATTTCAAGTTGTCTATTTCCTA  844

seq1  ACTTTAAATCATATTTGAGTCCAGCCTCTGGACCTCTGGATAAATGATTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAATCATATTTGAGTCCAGCCTCTGGACCTCTGGATAAATGATTC  894

seq1  ATTTCTGCTGAAGTAGTCTGTCAGAAATGATAAAGGAAATTAAGTTGAAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGCTGAAGTAGTCTGTCAGAAATGATAAAGGAAATTAAGTTGAAA  944

seq1  GGTAGGATGGACTTGTGTTGAGATAAATGGATGGTCCCATGGTGGGTTTA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGATGGACTTGTGTTGAGATAAATGGATGGTCCCATGGTGGGTTTA  994

seq1  ACCCCACCTCCCAAATATGAGGTAGACTGTATTCATCTATCCTGATTTTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCTCCCAAATATGAGGTAGACTGTATTCATCTATCCTGATTTTC  1044

seq1  TAAGAGCAAGCCAAAAAATAATCATACCAAACAAAAGAAAAAGATTGTTG  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCAAGCCAAAAAATAATCATACCAAACAAAAGAAAAAGATTGTTG  1094

seq1  CTCTTTGCTGCTTAGTTCTGAGGCAAAGTTAAGATGAGCTGTTTCCAGAT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCTGCTTAGTTCTGAGGCAAAGTTAAGATGAGCTGTTTCCAGAT  1144

seq1  GTACTAGTTCACAGCCTGGATCCTTACTGCAGGAATTC  1178
      ||||||||||||||||||||||||||||||||||||||
seq2  GTACTAGTTCACAGCCTGGATCCTTACTGCAGGAATTC  1182

seq1: chr13_22620053_22621171
seq2: B6Ng01-188G15.g_69_1196

seq1  GAATTCCATGCTTTTCATCCCAGAATTTAGGAGGCTGACACAAGTGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGCTTTTCATCCCAGAATTTAGGAGGCTGACACAAGTGGATT  50

seq1  TCTGTGTTCAGGGCCAACCTAGTCTTTAGAGCAAAGTCTAGGACACACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGTTCAGGGCCAACCTAGTCTTTAGAGCAAAGTCTAGGACACACAA  100

seq1  GGCTACACAGAGAAACCCTGTGATTACAGGATTACAGAACCCTACATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACAGAGAAACCCTGTGATTACAGGATTACAGAACCCTACATGGC  150

seq1  AAGGTGGTCATTTTTGCCAAGCTCTAATTTTGTTTAGGGAGGGTTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGTCATTTTTGCCAAGCTCTAATTTTGTTTAGGGAGGGTTTGCTT  200

seq1  GTTGTTCTGTTTTGGTTTTTTTCTCTTCTTGTTTTTTTTGAAACAGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCTGTTTTGGTTTTTTTCTCTTCTTGTTTTTTTTGAAACAGAGTC  250

seq1  TTACTATTTCACCATGGATCGTATAGAACTGGCTATGTGGAACAACCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATTTCACCATGGATCGTATAGAACTGGCTATGTGGAACAACCTGG  300

seq1  ACTAGAACTCACAGTGATCTGCCAGCCTCTGCTTCCAAAGTACGAGGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAACTCACAGTGATCTGCCAGCCTCTGCTTCCAAAGTACGAGGACT  350

seq1  AAAGGTATTCAGTACCACACCTGGCTTATGGGTAGTCATTTTTAACAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTATTCAGTACCACACCTGGCTTATGGGTAGTCATTTTTAACAACT  400

seq1  TCCAATCTGTAACACAATCATTAAGCATTCACTGGTTTACCTTTATTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCTGTAACACAATCATTAAGCATTCACTGGTTTACCTTTATTAAT  450

seq1  GAATACCCCTGAGCTTTTGATGGAAGATTACAGCATAATTCAGTAAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCCCTGAGCTTTTGATGGAAGATTACAGCATAATTCAGTAAACAT  500

seq1  TAGACACTTGGGATTTTATACTGCTTCCTTTAGTGCATTGACAGAATCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACTTGGGATTTTATACTGCTTCCTTTAGTGCATTGACAGAATCTA  550

seq1  GTCTCCTCATATGTAATGAAAGAAAAAAAATTGAAAGGCAATAATAACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCTCATATGTAATGAAAGAAAAAAAATTGAAAGGCAATAATAACCA  600

seq1  AAGTCAAACATTACCTGCCTCCTAGAGAGAGCAAAGAGTGGCCAGTTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAAACATTACCTGCCTCCTAGAGAGAGCAAAGAGTGGCCAGTTCTT  650

seq1  AGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCAAGACAGTGTTATTATAGTTTCTGGCTTCCTGAGGCCTATAGGG  700

seq1  CAGAAAAATCTAAAGCAATCACGTAATAACAACTAGGATGTAGAAGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAATCTAAAGCAATCACGTAATAACAACTAGGATGTAGAAGATGA  750

seq1  AAGGCCATGCTGATGTCTGAGTACTACACTGAGCTGAGCTTGCCCTACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCATGCTGATGTCTGAGTACTACACTGAGCTGAGCTTGCCCTACCC  800

seq1  TTTGCATGCAGTGGCAGAGCTGCCCCCACCTCTTGCCAGTCACCAGACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATGCAGTGGCAGAGCTGCCCCCACCTCTTGCCAGTCACCAGACTC  850

seq1  AGGAGATCTATCCCTGCCCTTCTCCTAGGCAGCAAGGTAGAGGTGGCTCT  900
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  AGGAGATCTATCCCTGCCCTTCTCCTAGGCAGCAAGGTAGGAGTGGCTCT  900

seq1  GGTGGGGTGGGTGCAAGACAGCTTGTCAGC-TATCAC-ACTTCAGATTTC  948
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  GGTGGGGTGGGTGCAAGACAGCTTGTCAGCTTATCACAACTTCAGATTTC  950

seq1  T-GGCCTCACACCT-CACCTG-ACCAGCATAAT-AGGCCTGGC-TCCATA  993
      | |||||||||||| |||||| ||||||||||| ||||||||| ||||||
seq2  TGGGCCTCACACCTCCACCTGAACCAGCATAATAAGGCCTGGCTTCCATA  1000

seq1  CCTCATCTG-CTA-TGTGGTGGCAT-GGATGT-AGGA--GAAATACCTCC  1037
      ||||||||| ||| |||||| |||| |||||| ||||   |||||||  |
seq2  CCTCATCTGCCTATTGTGGT-GCATGGGATGTAAGGAAGAAAATACCCTC  1049

seq1  ATAATCACCCACTTCCACCTCCTGCAGGAGGG-AGAGC-TAGCGCAGAGG  1085
      |||||||||||  | ||||| ||||| ||||| ||||| |||||||||| 
seq2  ATAATCACCCAACT-CACCTTCTGCAAGAGGGAAGAGCTTAGCGCAGAG-  1097

seq1  AAGAGTGCACCAGAGAGCTGTCCCAACCCCTCAC  1119
       |||||||||||||||||||| |  | |||||||
seq2  -AGAGTGCACCAGAGAGCTGTTC--ATCCCTCAC  1128