BAC Information

Click to search

BAC

Clone NameB6Ng01-190A13
Chromosome13 (Build37)
Map Location 27,250,316 - 27,251,442
singlet/doubletsinglet
Overlap genePrl3d3
Upstream geneLOC666221, LOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2
Downstream genePrl3c1, Prl3b1, Prl3a1, Prl6a1, Prl8a2, Prl2b1, Prl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190A13.bB6Ng01-190A13.g
ACCGA013895GA013896
length1,0071,132
definitionB6Ng01-190A13.b B6Ng01-190A13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatagattt
tctgaagtccaccttcttgagttctttatatatgttggaaattagtcccc
tatctgatttaggataggtaaagatcctttcccaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaaactttggagtttcat
taggtcccatttgtcaattctcgatcttacagcacaagccattgttgttc
tgtacaggaatttttcccctgtgcccatatcttcaaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttggt
ccacttagatttgaccttagtacaaggagataagtatggatcgattggat
tcttctacatgataacaaccagttgtgccagcaccaattgttgaaaatgc
tgtcttccttccactggatggttttaggtcccttgtcgaagatcaagtga
ccataagtgtgtgggttcatttctgggtcttcaattctattccattggtc
tactggtctgcctctataccagtaccatgcagtttttatcacaattgctc
tgtagtaaagctttagatcaggcatggtgattccaccagaggttctttta
accttgagaagactttttgctatcctaggtttttcgttattccagatgaa
tttgcaaattgctccttctaattcgttgaagaattgagttggaattttga
tggggattgcattgaatctgtagattgcttttggcaagacagccattttt
acaatgttgttctgccaatccatgagcatgggagatctttccatcttctg
agatcttctttatttctttcttcagagatttgaagtttttatcatataga
tctttcacttccttagctagagtcacgccaagatattttattttatttgt
gactattgagaaaggtgttgtttccctaatttcattctcagcctgtttat
tcttcgt
gaattcttatgttactcactgcttaatatttccttaatgcatgcccagaa
tttaatagttaattgttgactgtatcaacagtaatgagttgcacaatttt
tacaacctttgtatgaaggagacccttggtaatatttgaaagaaaattta
tgaagtcacaatccatactttaaaaggcatatcactttttaaccaataaa
aataagatatgtataaaactgcataaaaataataattctatgactcttag
ccaaatcctaggaaacataatacttaaaattatattaatcaggcatttgg
gggcatattgttttttctttgcaaataatattagcaaggacaataaaaaa
aacagcagtaaagaggggaaaagatggggacaatagaaaactagtttgct
catgtatgaaataaaaggtaggcttattatatttccattaatccactatt
tcaaatattgtaagattcttaaatataaaattgtgttgtttttcaaatgt
aattttcttatggatatgtatgtttccattcaattatgaaacctcaaatg
aatcacaacatttaaattcttccaggatttggattttttcgataaaactt
ggataacagacagaacacttcccctgtgtcatactgcttccatccatact
ccagagaatcgagaggaagtccatgaaattaaagtaggttttctccctgt
tttgttttaccaaacaaataatgatacatgttggctagcttttctatata
ttaagcccatagaggtgtggtaatctcagaattaatagataaaggtggaa
gggtcagagaataatgacatcatatagttgataacattagcaataactta
gatgactgccaattcacatttttcctagttctaactgtctagatagaagc
cagtttcatcataacccttctgtttgtcacctgggaagttcttccctcaa
ttggtaactcattcttgaatatatttatatacatatagggtaaacaccaa
tccagttgtatttgtggtatggcgctaaaggatcttctgctggcagcact
tgtgaactttcttcctaaaggttctcaactcttccaggacctacttctgt
tcctccattatctgtaacagtcttttcctgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27250316_27251442
seq2: B6Ng01-190A13.g_63_1194

seq1  GAATTCTTATGTTACTCACTGCTTAATATTTCCTTAATGCATGCCCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATGTTACTCACTGCTTAATATTTCCTTAATGCATGCCCAGAA  50

seq1  TTTAATAGTTAATTGTTGACTGTATCAACAGTAATGAGTTGCACAATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAGTTAATTGTTGACTGTATCAACAGTAATGAGTTGCACAATTTT  100

seq1  TACAACCTTTGTATGAAGGAGACCCTTGGTAATATTTGAAAGAAAATTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACCTTTGTATGAAGGAGACCCTTGGTAATATTTGAAAGAAAATTTA  150

seq1  TGAAGTCACAATCCATACTTTAAAAGGCATATCACTTTTTAACCAATAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCACAATCCATACTTTAAAAGGCATATCACTTTTTAACCAATAAA  200

seq1  AATAAGATATGTATAAAACTGCATAAAAATAATAATTCTATGACTCTTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGATATGTATAAAACTGCATAAAAATAATAATTCTATGACTCTTAG  250

seq1  CCAAATCCTAGGAAACATAATACTTAAAATTATATTAATCAGGCATTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCTAGGAAACATAATACTTAAAATTATATTAATCAGGCATTTGG  300

seq1  GGGCATATTGTTTTTTCTTTGCAAATAATATTAGCAAGGACAATAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATTGTTTTTTCTTTGCAAATAATATTAGCAAGGACAATAAAAAA  350

seq1  AACAGCAGTAAAGAGGGGAAAAGATGGGGACAATAGAAAACTAGTTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAGTAAAGAGGGGAAAAGATGGGGACAATAGAAAACTAGTTTGCT  400

seq1  CATGTATGAAATAAAAGGTAGGCTTATTATATTTCCATTAATCCACTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGAAATAAAAGGTAGGCTTATTATATTTCCATTAATCCACTATT  450

seq1  TCAAATATTGTAAGATTCTTAAATATAAAATTGTGTTGTTTTTCAAATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATATTGTAAGATTCTTAAATATAAAATTGTGTTGTTTTTCAAATGT  500

seq1  AATTTTCTTATGGATATGTATGTTTCCATTCAATTATGAAACCTCAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTTATGGATATGTATGTTTCCATTCAATTATGAAACCTCAAATG  550

seq1  AATCACAACATTTAAATTCTTCCAGGATTTGGATTTTTTCGATAAAACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAACATTTAAATTCTTCCAGGATTTGGATTTTTTCGATAAAACTT  600

seq1  GGATAACAGACAGAACACTTCCCCTGTGTCATACTGCTTCCATCCATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACAGACAGAACACTTCCCCTGTGTCATACTGCTTCCATCCATACT  650

seq1  CCAGAGAATCGAGAGGAAGTCCATGAAATTAAAGTAGGTTTTCTCCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAATCGAGAGGAAGTCCATGAAATTAAAGTAGGTTTTCTCCCTGT  700

seq1  TTTGTTTTACCAAACAAATAATGATACATGTTGGCTAGCTTTTCTATATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTACCAAACAAATAATGATACATGTTGGCTAGCTTTTCTATATA  750

seq1  TTAAGCCCATAGAGGTGTGGTAATCTCAGAATTAATAGATAAAGGTGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCCATAGAGGTGTGGTAATCTCAGAATTAATAGATAAAGGTGGAA  800

seq1  GGGTCAGAGAATAATGACATCATATAGTTGATAACATTAGCAATAACTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAGAGAATAATGACATCATATAGTTGATAACATTAGCAATAACTTA  850

seq1  GATGACTGCCAATTCACATTTTTCCTAGTTCTAACTGTCTAGATAGAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTGCCAATTCACATTTTTCCTAGTTCTAACTGTCTAGATAGAAGC  900

seq1  CAGTTTCATCATAA-CCTTCTGTTTGTCACCTGGGAAGTTCTTCCCTCAA  949
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CAGTTTCATCATAACCCTTCTGTTTGTCACCTGGGAAGTTCTTCCCTCAA  950

seq1  TTGGTAACTCATTCTTGAATATATTTATATACATATAGGGTAAACACCAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAACTCATTCTTGAATATATTTATATACATATAGGGTAAACACCAA  1000

seq1  TCCAGTTGTATTTGTGGTATGGCGCTAAAGGATCTTCTGCTGGCAGCACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTGTATTTGTGGTATGGCGCTAAAGGATCTTCTGCTGGCAGCACT  1050

seq1  TGTGAACTTTCTTCCTAAA-GTTCTCAACTC-TCCAGGACCTACTTCTGT  1097
      ||||||||||||||||||| ||||||||||| ||||||||||||||||||
seq2  TGTGAACTTTCTTCCTAAAGGTTCTCAACTCTTCCAGGACCTACTTCTGT  1100

seq1  CCCTTCATTATCTGT-ACAGTC-TTTCCTGAC  1127
       ||| |||||||||| |||||| |||||||||
seq2  TCCTCCATTATCTGTAACAGTCTTTTCCTGAC  1132