BAC Information

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BAC

Clone NameB6Ng01-190E13
Chromosome13 (Build37)
Map Location 88,784,695 - 88,943,380
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC675707, LOC667230, EG435375
Downstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190E13.bB6Ng01-190E13.g
ACCGA014077GA014078
length1,0491,168
definitionB6Ng01-190E13.b B6Ng01-190E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,942,327 - 88,943,380)(88,784,695 - 88,785,860)
sequence
gaattctttgagaagaaatgagtcctttgcttagtagtttgagaaatgaa
ttgtaagcatttaggaaacaaattagaataagtgcctgatggtagaaata
cttgcttagggtaaagctggagtagtatatcaaagctgtctggaagagtt
gaagccatccagatgttattctgcaagaaaggacctataattgtattaat
attttgtttttaatcactagtgcttgtgaaaatgctagtgtacatatagt
tattgattgattagtgaaatgatggtactccaagaaaattgaatccatgt
caattttcattcattatgggaaaacatgcattgatatgacaaataaccaa
aattcattgcaaattaatacatctacaaaatagctcaagtaccttaggtt
tagagagcagaaagattgtaagagccagaggatcagagaatttgctggga
aaatgtgtctcttagcaatgtcaatagctacactcaggaagtctcaacaa
catgactacctaaaaatgagctgaacaaggaaaatagacagatcaaagta
gatgaaggacacaccagaaggccttaacctcacacaaagagctacaggca
attaaggatgctaagagtagggtaaatagttccccagggaagatcacacc
aattataaatccatcaacaaatggtcagcttaggaaacagacatacaaat
aacattatatttaagaatatatatgtatataaatatgagtatatgaatgt
agcaacaattagtagaaaaagagaccataacttgaaatggaggaagaggg
gtgtaagggagagtttagaggaaggaaaggaaaggggaaataatgtatag
tataatctttaaaagcaaaaaaaggagtagaaataagtgtaccacagaat
gattaaaattgttgaaattgttcatagttgcacaagaaatattttgggaa
aattgtgtttttcaaaatcaagtaatatgcaatatatataattgtatgta
tattatatatattatattgtcaatattgaagttcaaaatgtgttcattt

gaattcattggccaagattctcaaaaattgtatagaactatgaataacac
agaaaacacatagtattttttaagggtcatgtgtcttagtcagggtttct
attcctgcacaaacatcatgaccaagaagcagttggggaggaaaggattt
attcagcttacacttccatactgctgttcatcaccaaaggaagtcaggag
tggaactcaagcaggtcaggaagcaggagctgatgcagaggccactgagg
gatgttctttactggcttgcttcccctggcttgctcagcctgctctctta
tagagccaagactaccagcccagagatggcaccacccacaaggggacctc
cccccttgatcactaattgagaaaatgccttacagctggatctcctgaga
gcatttttccaaatgaagatcctttctctgtgataactccagcctgtttc
aagttgacacaaaactagccagtacactcatggaaatatgaacattgcat
ttggagatggagtttcattctcctgctgtatgtcactaaatggcaaaggg
catggaaagatattagaagactaaatcattaatatttcagtgaataaatg
aagataaagatattcactatacatattctacagatgtattatcttatcag
tgaactagaaattgataaaaatacatacatcctagtatcaattaaaaggc
tcaggacttttaatgttactgatttaagatctgatttgtataaattttcc
tgtagcatcttcataccaaataggtgtcaaagctactataaattcctgtt
aatgaagattatctcagaattttaataacatctttgcaacaactttttaa
actgaatatattgttaacaatgtaactagtctctctttttttttaaatca
ctttcctggttatcaagtggattctgtttttctaatatttaacttctaag
ggatatgaaaatttgtcccataatttatatatgctgagttagcaaactag
aagcaggacattaaatgtgattgtttgcatgtgcctcagtccaggagtgc
acaattaaaagtgtgcatgggagtaggtgtgtcactgtgttggtgggtct
aagaactctcatacctcattggcctgaagtcattcttccactaggcaggc
cttcgagatggagatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_88942327_88943380
seq2: B6Ng01-190E13.b_50_1098 (reverse)

seq1  AAATGAACACATATTTAAACTTCAAATATTTACAATATAATATATATAAT  50
      |||||||||||| ||| |||||| |||||| |||||||||||||||||||
seq2  AAATGAACACAT-TTTGAACTTC-AATATTGACAATATAATATATATAAT  48

seq1  ATACATACAAATTATATATATTGCATATTTACTTTGATTTTGAAAAACAC  100
      |||||||| |||||||||||||||||| |||| |||||||||||||||||
seq2  ATACATAC-AATTATATATATTGCATA-TTAC-TTGATTTTGAAAAACAC  95

seq1  AATTTT-CCAAAATATTTCTTGTGCAACTATGAACAATTTCAACAATTTT  149
      |||||| ||||||||||||||||||||||||||||||||||||||| |||
seq2  AATTTTCCCAAAATATTTCTTGTGCAACTATGAACAATTTCAACAA-TTT  144

seq1  TAATCATTCTGT-GTACACTTATTTCTACTTCCTTTTTTTGCTTTTTAAG  198
      |||||||||||| |||||||||||||||| |||||||||||||||| |||
seq2  TAATCATTCTGTGGTACACTTATTTCTAC-TCCTTTTTTTGCTTTTAAAG  193

seq1  ATTATACTATACATTATTTCCCCTTTCCTTTCCTTCCTCTAAACTCTCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACTATACATTATTTCCCCTTTCCTTTCCTTCCTCTAAACTCTCCC  243

seq1  TTACACCCCTCTTCCTCCATTTCAAGTTATGGTCTCTTTTTCTACTAATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCCCTCTTCCTCCATTTCAAGTTATGGTCTCTTTTTCTACTAATT  293

seq1  GTTGCTACATTCATATACTCATATTTATATACATATATATTCTTAAATAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTACATTCATATACTCATATTTATATACATATATATTCTTAAATAT  343

seq1  AATGTTATTTGTATGTCTGTTTCCTAAGCTGACCATTTGTTGATGGATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATTTGTATGTCTGTTTCCTAAGCTGACCATTTGTTGATGGATTT  393

seq1  ATAATTGGTGTGATCTTCCCTGGGGAACTATTTACCCTACTCTTAGCATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTGGTGTGATCTTCCCTGGGGAACTATTTACCCTACTCTTAGCATC  443

seq1  CTTAATTGCCTGTAGCTCTTTGTGTGAGGTTAAGGCCTTCTGGTGTGTCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTGCCTGTAGCTCTTTGTGTGAGGTTAAGGCCTTCTGGTGTGTCC  493

seq1  TTCATCTACTTTGATCTGTCTATTTTCCTTGTTCAGCTCATTTTTAGGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTACTTTGATCTGTCTATTTTCCTTGTTCAGCTCATTTTTAGGTA  543

seq1  GTCATGTTGTTGAGACTTCCTGAGTGTAGCTATTGACATTGCTAAGAGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGTTGTTGAGACTTCCTGAGTGTAGCTATTGACATTGCTAAGAGAC  593

seq1  ACATTTTCCCAGCAAATTCTCTGATCCTCTGGCTCTTACAATCTTTCTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCCCAGCAAATTCTCTGATCCTCTGGCTCTTACAATCTTTCTGC  643

seq1  TCTCTAAACCTAAGGTACTTGAGCTATTTTGTAGATGTATTAATTTGCAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAACCTAAGGTACTTGAGCTATTTTGTAGATGTATTAATTTGCAA  693

seq1  TGAATTTTGGTTATTTGTCATATCAATGCATGTTTTCCCATAATGAATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTGGTTATTTGTCATATCAATGCATGTTTTCCCATAATGAATGA  743

seq1  AAATTGACATGGATTCAATTTTCTTGGAGTACCATCATTTCACTAATCAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGACATGGATTCAATTTTCTTGGAGTACCATCATTTCACTAATCAA  793

seq1  TCAATAACTATATGTACACTAGCATTTTCACAAGCACTAGTGATTAAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACTATATGTACACTAGCATTTTCACAAGCACTAGTGATTAAAAA  843

seq1  CAAAATATTAATACAATTATAGGTCCTTTCTTGCAGAATAACATCTGGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTAATACAATTATAGGTCCTTTCTTGCAGAATAACATCTGGAT  893

seq1  GGCTTCAACTCTTCCAGACAGCTTTGATATACTACTCCAGCTTTACCCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAACTCTTCCAGACAGCTTTGATATACTACTCCAGCTTTACCCTA  943

seq1  AGCAAGTATTTCTACCATCAGGCACTTATTCTAATTTGTTTCCTAAATGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTATTTCTACCATCAGGCACTTATTCTAATTTGTTTCCTAAATGC  993

seq1  TTACAATTCATTTCTCAAACTACTAAGCAAAGGACTCATTTCTTCTCAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATTCATTTCTCAAACTACTAAGCAAAGGACTCATTTCTTCTCAAA  1043

seq1  GAATTC  1054
      ||||||
seq2  GAATTC  1049


seq1: chr13_88784695_88785860
seq2: B6Ng01-190E13.g_63_1230

seq1  GAATTCATTGGCCAAGATTCTCAAAAATTGTATAGAACTATGAATAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGCCAAGATTCTCAAAAATTGTATAGAACTATGAATAACAC  50

seq1  AGAAAACACATAGTATTTTTTAAGGGTCATGTGTCTTAGTCAGGGTTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACACATAGTATTTTTTAAGGGTCATGTGTCTTAGTCAGGGTTTCT  100

seq1  ATTCCTGCACAAACATCATGACCAAGAAGCAGTTGGGGAGGAAAGGATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGCACAAACATCATGACCAAGAAGCAGTTGGGGAGGAAAGGATTT  150

seq1  ATTCAGCTTACACTTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTTACACTTCCATACTGCTGTTCATCACCAAAGGAAGTCAGGAG  200

seq1  TGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCACTGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCACTGAGG  250

seq1  GATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTTTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTA  300

seq1  TAGAGCCAAGACTACCAGCCCAGAGATGGCACCACCCACAAGGGGACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCAAGACTACCAGCCCAGAGATGGCACCACCCACAAGGGGACCTC  350

seq1  CCCCCTTGATCACTAATTGAGAAAATGCCTTACAGCTGGATCTCCTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTGATCACTAATTGAGAAAATGCCTTACAGCTGGATCTCCTGAGA  400

seq1  GCATTTTTCCAAATGAAGATCCTTTCTCTGTGATAACTCCAGCCTGTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTTCCAAATGAAGATCCTTTCTCTGTGATAACTCCAGCCTGTTTC  450

seq1  AAGTTGACACAAAACTAGCCAGTACACTCATGGAAATATGAACATTGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGACACAAAACTAGCCAGTACACTCATGGAAATATGAACATTGCAT  500

seq1  TTGGAGATGGAGTTTCATTCTCCTGCTGTATGTCACTAAATGGCAAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATGGAGTTTCATTCTCCTGCTGTATGTCACTAAATGGCAAAGGG  550

seq1  CATGGAAAGATATTAGAAGACTAAATCATTAATATTTCAGTGAATAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAAAGATATTAGAAGACTAAATCATTAATATTTCAGTGAATAAATG  600

seq1  AAGATAAAGATATTCACTATACATATTCTACAGATGTATTATCTTATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAGATATTCACTATACATATTCTACAGATGTATTATCTTATCAG  650

seq1  TGAACTAGAAATTGATAAAAATACATACATCCTAGTATCAATTAAAAGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTAGAAATTGATAAAAATACATACATCCTAGTATCAATTAAAAGGC  700

seq1  TCAGGACTTTTAATGTTACTGATTTAAGATCTGATTTGTATAAATTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTTTTAATGTTACTGATTTAAGATCTGATTTGTATAAATTTTCC  750

seq1  TGTAGCATCTTCATACCAAATAGGTGTCAAAGCTACTATAAATTCCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCATCTTCATACCAAATAGGTGTCAAAGCTACTATAAATTCCTGTT  800

seq1  AATGAAGATTATCTCAGAATTTTAATAACATCTTTGCAACAACTTTTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGATTATCTCAGAATTTTAATAACATCTTTGCAACAACTTTTTAA  850

seq1  ACTGAATATATTGTTAACAATGTAACTAGTCTCTC-TTTTTTTTAAATCA  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACTGAATATATTGTTAACAATGTAACTAGTCTCTCTTTTTTTTTAAATCA  900

seq1  CTTTCCTGGTTATCAAGTGGATTCTGTTTTTCTAATATTTAACTTCTAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGGTTATCAAGTGGATTCTGTTTTTCTAATATTTAACTTCTAAG  950

seq1  GGATATGAAAATTTGTCCCATAATTAATATATGCTGAAGTTAGCAAACTA  999
      ||||||||||||||||||||||||| |||||||||| |||||||||||||
seq2  GGATATGAAAATTTGTCCCATAATTTATATATGCTG-AGTTAGCAAACTA  999

seq1  GAAGCAGGACATTAAATGTGATTGTTTGCATGTG-CTCAGTCCAGGAAGT  1048
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  GAAGCAGGACATTAAATGTGATTGTTTGCATGTGCCTCAGTCCAGG-AGT  1048

seq1  GGCACAATTAAAAGGTGTGCAATGGAGTAGGTGTGTCACTGTGGTTGTGG  1098
       |||||||||||| |||||||  |||||||||||||||||||| | ||||
seq2  -GCACAATTAAAA-GTGTGCATGGGAGTAGGTGTGTCACTGTGTTGGTGG  1096

seq1  GTTCTAAG-ACTCTCATA-CTCATTGCCTGGAAGTCATTCTTCCACTA-G  1145
      | |||||| ||||||||| ||||||| |  |||||||||||||||||| |
seq2  G-TCTAAGAACTCTCATACCTCATTGGCCTGAAGTCATTCTTCCACTAGG  1145

seq1  CA-GCCTTC-AGATGAAGATATA  1166
      || |||||| ||||| |||||||
seq2  CAGGCCTTCGAGATGGAGATATA  1168


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