BAC Information

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BAC

Clone NameB6Ng01-190M16
Chromosome16 (Build37)13 (Build37)
Map Location 5,997,049 - 5,997,81850,428,289 - 50,428,444
singlet/doubletsingletsinglet
Overlap geneA2bp1
Upstream geneSept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436
Downstream geneLOC100042445
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190M16.bB6Ng01-190M16.g
ACCGA014460GA014461
length770165
definitionB6Ng01-190M16.b B6Ng01-190M16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,997,049 - 5,997,818)(50,428,289 - 50,428,444)
sequence
gaattcccatagtagaatgactggtgagttagtccctctgtccctttcct
cagctactgggattttacagacaagtactttacccactgagatatctctc
cctctccctagcccagattcttttgtcctaaatataaaagaggcccatgt
gattagggccgaaaagagccgtctgcctggcattggaacttctcaatgaa
tccgtcatgaagtgactgtgctgtgaaaaagttctgaggctagagccaga
gctgcgtgtgagaagggaggacagagagagctgaagcgtcccagaggaag
gggtgtttgccatgtcttggtgtatctcatatagagaaaggcctatcact
tatctaagggctgagttgggatggcatccgttggcatttggagtctttcc
atggaatatgaaggagtttcagaattcaataatgcaatcaggaccaagcc
tgcccccacaagcagtgactcatgtgccatgaagtttttcattaaaaaat
tccagggctcacaaagtaaagaaaaaggaaaggggggccttctacccttc
atttgttcctgccactgccttggagcctcagatgctgatcattcaaatgg
ggccttggaattttaaatcaagttttactttgcaaatttaatgaaatgca
aacaaatacttagcagttctaaagggcatgaagtcattaaggcttctcat
tttgttaggtgctttggggagtctcgataatttttggagtgaaatcaatt
aagagtgtggtgtgtgtgtg
cgcggaattctctccttctccctctctccctctctccccctctctccctt
cttccccctctgtctttctctccccctccctcccccctctctccttctct
ctctctctctctctctctctctctctctctctctctctctctctctctct
gtgtgtgagtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_5997049_5997818
seq2: B6Ng01-190M16.b_49_818

seq1  GAATTCCCATAGTAGAATGACTGGTGAGTTAGTCCCTCTGTCCCTTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATAGTAGAATGACTGGTGAGTTAGTCCCTCTGTCCCTTTCCT  50

seq1  CAGCTACTGGGATTTTACAGACAAGTACTTTACCCACTGAGATATCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTACTGGGATTTTACAGACAAGTACTTTACCCACTGAGATATCTCTC  100

seq1  CCTCTCCCTAGCCCAGATTCTTTTGTCCTAAATATAAAAGAGGCCCATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTAGCCCAGATTCTTTTGTCCTAAATATAAAAGAGGCCCATGT  150

seq1  GATTAGGGCCGAAAAGAGCCGTCTGCCTGGCATTGGAACTTCTCAATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGGCCGAAAAGAGCCGTCTGCCTGGCATTGGAACTTCTCAATGAA  200

seq1  TCCGTCATGAAGTGACTGTGCTGTGAAAAAGTTCTGAGGCTAGAGCCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCATGAAGTGACTGTGCTGTGAAAAAGTTCTGAGGCTAGAGCCAGA  250

seq1  GCTGCGTGTGAGAAGGGAGGACAGAGAGAGCTGAAGCGTCCCAGAGGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGTGTGAGAAGGGAGGACAGAGAGAGCTGAAGCGTCCCAGAGGAAG  300

seq1  GGGTGTTTGCCATGTCTTGGTGTATCTCATATAGAGAAAGGCCTATCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTTGCCATGTCTTGGTGTATCTCATATAGAGAAAGGCCTATCACT  350

seq1  TATCTAAGGGCTGAGTTGGGATGGCATCCGTTGGCATTTGGAGTCTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAAGGGCTGAGTTGGGATGGCATCCGTTGGCATTTGGAGTCTTTCC  400

seq1  ATGGAATATGAAGGAGTTTCAGAATTCAATAATGCAATCAGGACCAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATATGAAGGAGTTTCAGAATTCAATAATGCAATCAGGACCAAGCC  450

seq1  TGCCCCCACAAGCAGTGACTCATGTGCCATGAAGTTTTTCATTAAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCACAAGCAGTGACTCATGTGCCATGAAGTTTTTCATTAAAAAAT  500

seq1  TCCAGGGCTCACAAAGTAAAGAAAAAGGAAAGGGGGGCCTTCTACCCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCTCACAAAGTAAAGAAAAAGGAAAGGGGGGCCTTCTACCCTTC  550

seq1  ATTTGTTCCTGCCACTGCCTTGGAGCCTCAGATGCTGATCATTCAAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTCCTGCCACTGCCTTGGAGCCTCAGATGCTGATCATTCAAATGG  600

seq1  GGCCTTGGAATTTTAAATCAAGTTTTACTTTGCAAATTTAATGAAATGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTGGAATTTTAAATCAAGTTTTACTTTGCAAATTTAATGAAATGCA  650

seq1  AACAAATACTTAGCAGTTCTAAAGGGCATGAAGTCATTAAGGCTTCTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATACTTAGCAGTTCTAAAGGGCATGAAGTCATTAAGGCTTCTCAT  700

seq1  TTTGTTAGGTGCTTTGGGGAGTCTCGATAATTTTTGGAGTGAAATCAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGGTGCTTTGGGGAGTCTCGATAATTTTTGGAGTGAAATCAATT  750

seq1  AAGAGTGTGGTGTGTGTGTG  770
      ||||||||||||||||||||
seq2  AAGAGTGTGGTGTGTGTGTG  770

seq1: chr13_50428289_50428444
seq2: B6Ng01-190M16.g_70_226 (reverse)

seq1  CACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACTCACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50

seq1  GAGAGAGAGAGGGAGAAGGAGAGGGAGAGGGAGGGAGAGGGAGAGGGAGG  100
      ||||||||||| ||||  |||| |||||| | ||| ||||||| ||||| 
seq2  GAGAGAGAGAGAGAGA--GAGAAGGAGAGAG-GGGGGAGGGAGGGGGAGA  97

seq1  GAGAGGGAGAGAGAGAGGGAGGGAGAGA--GAGAGAGAGGGAGAGAGAGA  148
      || ||  |||| | || | |||||||||  | ||||||||||||||| ||
seq2  GAAAGACAGAGGGGGAAGAAGGGAGAGAGGGGGAGAGAGGGAGAGAGGGA  147

seq1  GA--GAGAGA  156
      ||  ||||||
seq2  GAAGGAGAGA  157