BAC Information

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BAC

Clone NameB6Ng01-190N13
Chromosome13 (Build37)
Map Location 25,226,331 - 25,227,454
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
Downstream geneNrsn1, Tpi-rs8, LOC214973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190N13.bB6Ng01-190N13.g
ACCGA014500GA014501
length1,2061,109
definitionB6Ng01-190N13.b B6Ng01-190N13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagtaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagttttggagctgagatg
aaaggatggaccatgtagagactgccatagccaggggatccaccccataa
ttcagcatccaaacgctgacaccattgcatacactagcaagatttttatt
gaaaggacgcagacgcagatgtagctgtctctttgtgagactatgccggg
gcccagcaaacacagaagtggatgctcacagtcagctaatggaatggatc
atagggcttcccaatggaggagctagagaaagtagccataggagcttaaa
gggatctgcaaaccctataggtggaacaaccattatgagctacccataac
cccgaaactcttgactctgctgcatataatcaaaagaatggcctaactcc
gcctcactggaaaaagagggcccattggaactttgatacttataatgccc
cagttacagggcgaaatattctagggtcataaaatgggcaatgtgggttc
gtcaac
gaattcaaaccacactgtgtttcatggatttattccccctcccttctaag
acaagttgtccctttaatctgaccctaacagctgaaccctgaagactgat
gacagaattaaagaaagcagtacgatcagagaaaaggaggggccagcaag
agggtccaaccgaccccatttctcattctattgtcattttctcatggagt
gtaacactgagccatacttgttagtggcaggtaggtgtggtccagggaga
actctcaggccctgaaatgctctggaccacaccgaaaggcaggcggctgc
tgactggggattgggatttagctggggaagaagtcctgggcacataatta
ggaggaaaacaaaaaaggaatgggtctaatttcagtatttaaatctcaaa
tgcgttttaaaccaagagtagttaaatgttaattaagcctccaaattaga
atagtaatttaatttaatatgagcagggaagggaaaggttgtttggagat
ttgtttatcgaacaatggagatttgctgtaattatccctttccccttctt
attttttaatttttgagatattctgtagctcagactggccatgaactcat
tgtgtagctagcccaggtgtcctcaaactcaagtcaatcctcctgcctct
ttttcattttcttcctcttcctcttcctattcctcttgttcctcttgttg
ttgttgtggttgttcttcctcctcccccttccttttcttgttcttcctgt
tcttgttcctcttcttcctcttccttttccacttccacttctacttcttg
ttctcccattttttttctccatgtaggaagtaaacttgggacctcacaca
gtgatgggggaacaacatggcttactcagtgccctctggcttcttcttgg
agtgtctgacagccattgctttcactaaagcctgcacacattgctctctc
taaagccctgaacacatcttttaggcggtggaaacttcttccagactcaa
ccctgttctttgcttttatttagatcaatcctatttctaactatgcaaat
ttccttcttgattcttcacagcataatatgctgttatttaacagttgtat
aatgaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25226331_25227454
seq2: B6Ng01-190N13.g_66_1174

seq1  GAATTCAAACCACACTGTGTTTCATGGATTTATTCCCCCTCCCTTCTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCACACTGTGTTTCATGGATTTATTCCCCCTCCCTTCTAAG  50

seq1  ACAAGTTGTCCCTTTAATCTGACCCTAACAGCTGAACCCTGAAGACTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTGTCCCTTTAATCTGACCCTAACAGCTGAACCCTGAAGACTGAT  100

seq1  GACAGAATTAAAGAAAGCAGTACGATCAGAGAAAAGGAGGGGCCAGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAATTAAAGAAAGCAGTACGATCAGAGAAAAGGAGGGGCCAGCAAG  150

seq1  AGGGTCCAACCGACCCCATTTCTCATTCTATTGTCATTTTCTCATGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCAACCGACCCCATTTCTCATTCTATTGTCATTTTCTCATGGAGT  200

seq1  GTAACACTGAGCCATACTTGTTAGTGGCAGGTAGGTGTGGTCCAGGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACTGAGCCATACTTGTTAGTGGCAGGTAGGTGTGGTCCAGGGAGA  250

seq1  ACTCTCAGGCCCTGAAATGCTCTGGACCACACCGAAAGGCAGGCGGCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGGCCCTGAAATGCTCTGGACCACACCGAAAGGCAGGCGGCTGC  300

seq1  TGACTGGGGATTGGGATTTAGCTGGGGAAGAAGTCCTGGGCACATAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGGGGATTGGGATTTAGCTGGGGAAGAAGTCCTGGGCACATAATTA  350

seq1  GGAGGAAAACAAAAAAGGAATGGGTCTAATTTCAGTATTTAAATCTCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAACAAAAAAGGAATGGGTCTAATTTCAGTATTTAAATCTCAAA  400

seq1  TGCGTTTTAAACCAAGAGTAGTTAAATGTTAATTAAGCCTCCAAATTAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTTTTAAACCAAGAGTAGTTAAATGTTAATTAAGCCTCCAAATTAGA  450

seq1  ATAGTAATTTAATTTAATATGAGCAGGGAAGGGAAAGGTTGTTTGGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATTTAATTTAATATGAGCAGGGAAGGGAAAGGTTGTTTGGAGAT  500

seq1  TTGTTTATCGAACAATGGAGATTTGCTGTAATTATCCCTTTCCCCTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTATCGAACAATGGAGATTTGCTGTAATTATCCCTTTCCCCTTCTT  550

seq1  ATTTTTTAATTTTTGAGATATTCTGTAGCTCAGACTGGCCATGAACTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTAATTTTTGAGATATTCTGTAGCTCAGACTGGCCATGAACTCAT  600

seq1  TGTGTAGCTAGCCCAGGTGTCCTCAAACTCAAGTCAATCCTCCTGCCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCTAGCCCAGGTGTCCTCAAACTCAAGTCAATCCTCCTGCCTCT  650

seq1  TTTTCATTTTCTTCCTCTTCCTCTTCCTATTCCTCTTGTTCCTCTTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTTTCTTCCTCTTCCTCTTCCTATTCCTCTTGTTCCTCTTGTTG  700

seq1  TTGTTGTGGTTGTTCTTCCTCCTCCCCCTTCCTTTTCTTGTTCTTCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGGTTGTTCTTCCTCCTCCCCCTTCCTTTTCTTGTTCTTCCTGT  750

seq1  TCTTGTTCCTCTTCTTCCTCTTCCTTTTCCACTTCCACTTCTACTTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTCCTCTTCTTCCTCTTCCTTTTCCACTTCCACTTCTACTTCTTG  800

seq1  TTCTCCCATTTTTTTTCTCCATGTAGGAAGTAAACTTGGGACCTCACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCATTTTTTTTCTCCATGTAGGAAGTAAACTTGGGACCTCACACA  850

seq1  GTGAT-GGGGAACAACATGGCTTACTCAGTGCCCTCTGGCTTCTTCTTGG  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGGGGGAACAACATGGCTTACTCAGTGCCCTCTGGCTTCTTCTTGG  900

seq1  AGTGTCTGACAGCCATTGCTTTCACTAAAGCCCTGCACACATTGCTCTCT  949
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTGTCTGACAGCCATTGCTTTCACTAAAG-CCTGCACACATTGCTCTCT  949

seq1  CTAAAGCCCTGAACACAACCTTTTTAGGCGGTGGAAACTTCTTTCCAGAC  999
      ||||||||||||||||| |  |||||||||||||||||||| ||||||||
seq2  CTAAAGCCCTGAACACATC--TTTTAGGCGGTGGAAACTTC-TTCCAGAC  996

seq1  TCAACCCTGTTCTTTGCTTTTTATTTTAGATCAAAATCCTATTTCTAACT  1049
      |||||||||||||||||||||   ||||||||  ||||||||||||||||
seq2  TCAACCCTGTTCTTTGCTTTT--ATTTAGATC--AATCCTATTTCTAACT  1042

seq1  ATGCAAAATTTCCCTCTTTGATTCCTCACAAGCATAATTATGGTTGTTAT  1099
      |||| |||||||| || ||||||| |||| ||||||| ||| | ||||||
seq2  ATGC-AAATTTCCTTC-TTGATTCTTCAC-AGCATAA-TAT-GCTGTTAT  1087

seq1  TTAACAGTTTTGTAATAATGAAAAA  1124
      ||||||||| |   |||||||||||
seq2  TTAACAGTTGT---ATAATGAAAAA  1109