BAC Information

Click to search

BAC

Clone NameB6Ng01-191I16
Chromosome13 (Build37)
Map Location 92,958,205 - 93,110,936
singlet/doubletdoublet
Overlap geneMsh3
Upstream geneCkmt2, Rasgrf2, Rasgrf2
Downstream geneDhfr, 6430502M16Rik, 4930405M20Rik, Zfyve16, LOC100039070, Spz1, Serinc5, Ppia-ps13_1124.1, Thbs4, EG624619, EG218444, Papd4, LOC100039163, Homer1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-191I16.bB6Ng01-191I16.g
ACCGA015005GA015006
length1,1821,190
definitionB6Ng01-191I16.b B6Ng01-191I16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,109,764 - 93,110,936)(92,958,205 - 92,959,382)
sequence
gaattccttcccgaatttctgagtcagaagttagaaacatttatacaaat
tgtggttgcttgctaaattgatagataatactggtccaggggcttcatga
actctttggaacatttacagggattatctgaataatctttattatttcta
ttataggttgaaaactgtaagaaaattgaaaaccccttttttgttcttga
ttctcttctgtgttcaacattgaccagttaaaagtctaacagttcattta
tgaggggtgctgatgctggagagcttaaagttgaataaattcttagactt
ttaaaagaaattcctaagtgtaagaacatttactgtgtttcatgccttta
atattgtttattttccttcataaccaagtgtatatttaattaatttagat
taatctagaatttggtcattttaatcattgtgttagatttctgttttcta
attatttttataaaaattaataaaagttaaagtaaacaagaagaaagcca
aaccctgtctgtgcagaagcagacagtgacacgatgcgatttgtttggca
aggaactttgcctgatggcatcctcgtgctcacgtcagatgagggtcaga
agcctgggtttggcatgctggagatgctggctgactgggactcaggaatc
taacgacttcaggccatcttagtgtatttctctagctagcattcctggtt
tataattctgctcacgcttactgaccaagtaagcctccattcctggtcaa
ttttctttctgtaccttttgctcatgaagagtggagaattaagcctatgt
ctctatgagaacctgtacctaatttatgtctatagagaacaaggtggtag
attttcagacgtcacaaggtcgtaggttgggatggaaatctgtctctttg
ccttagtgactttgagtaatcaattagactatcttgtctttcctgtgtcc
ttgttgtataaaaatacaggaagtaagagtgcttcactattaaagatgag
ttgtaaagataatattgccataaaggtttctaggatagggtcttgccaag
aaaactcactactcagggaaaataattgtcctagttccctcttctgtttg
catgataaagtaccttggttccagtactttatagaaaaggaggattaacg
gtggcttatggttcgaagttagagttccttga
gaattcttctgactccagggaaacttttgacatactcactcccacagcct
atccagccccattcggacatggcctcactgggaatgtatgatgcattttt
actgtgaaaacggtcatttagcctgatggcaaagcccatctcttctaaaa
ctctactctagccctcctagaacacagcgtgggagtgtgtcctcaaagca
caccccccggtaagatttcaattttaattaattttgtaattgatgacatt
ttagggaaacatatgatacagaagtcaggtatgcctttttgaaatagtca
atttttgctagctttctgattaaagaactcaagaagaactcaaaggagaa
gaaaagaaagacatcttccagcacttctaactcacacataaccaatactg
caattcagtaatttaaaataatgacaactgagccaggcagtggtgacgca
cacctttaatcccagcactcgggaggcagaggcaggtggatttctgagat
cgagatcagcctggtctacagagtgagttccaggacagccagagctatac
agagaaaccctgtcttgaaaaaaccaaaacaaacaaacaacaaaaaaaaa
ataatgacaactggttttctagcttccattcacattgttaagtgaatccc
cactgtgcaaggaccagcatcttcagagctgaacccactgaataccagct
cctgacattcctcctctcccaccactgccttctgtcctgcagacttcagt
attctaggcgcatggtctttttgtaactgtccttttcacatcttttaaaa
gtccatccatgttgtacatctagcatccataaagtacatctagcatgtac
tagaatttcctttctttacaattttaaaatttgttgcacctgtgtgtttt
gcctgcataatgtctgtgcacatgcatgtctggtacccacagaagctaga
agaagatgggccaaagctgaagtagcatggcttgagcccacaatggtgtt
gctgggaaactgaaacccagggtccttttcgaacagctagtggaggcttt
aactgcttgaaccattctcttttcaggcctagctacttattgtttgacca
tgtgttatagtcattgaaccacggtcaggaatgcagaaccttaagccttt
cttcccttaactttcagttcatccaagcatcactatcggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_93109764_93110936
seq2: B6Ng01-191I16.b_45_1226 (reverse)

seq1  TCAAGG-ACTCTAACCCTCTGGAACCATAAGCCCACGTAAATCCTTC-TT  48
      |||||| ||||||||    | ||||||||||||  ||| |||||| | ||
seq2  TCAAGGAACTCTAAC---TTCGAACCATAAGCCACCGTTAATCCTCCTTT  47

seq1  TCTATAAAGTACCTTGAA-CAAGGTACTTTATCATGC-AACAGAAGA-GG  95
      ||||||||||| || ||| |||||||||||||||||| ||||||||| ||
seq2  TCTATAAAGTA-CTGGAACCAAGGTACTTTATCATGCAAACAGAAGAGGG  96

seq1  AACTAAGACAATTATTTTCCCTGAGTAGTGAGTTTTCTTGGCCAGGCCCT  145
      ||||| |||||||||||||||||||||||||||||||||||| || ||||
seq2  AACTAGGACAATTATTTTCCCTGAGTAGTGAGTTTTCTTGGCAAGACCCT  146

seq1  ATCCTAGAAA-CTTTATG--CATATTATCTTTACAACTCATCTTT-ATAG  191
      |||||||||| |||||||   |||||||||||||||||||||||| ||||
seq2  ATCCTAGAAACCTTTATGGCAATATTATCTTTACAACTCATCTTTAATAG  196

seq1  TG-AGCACTCTTACTTCCTGTA-TTTTATACAACAAGGACACAGG-AAGA  238
      || ||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  TGAAGCACTCTTACTTCCTGTATTTTTATACAACAAGGACACAGGAAAGA  246

seq1  CAAGATAGTCTAATTGATTACTCAAAGTCACTAAGGCAAAGAGACAGATT  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAGTCTAATTGATTACTCAAAGTCACTAAGGCAAAGAGACAGATT  296

seq1  TCCAT-CCAACCTACGACCTTGTGACGTCTGAAAATCTACCACCTTGTTC  337
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCAACCTACGACCTTGTGACGTCTGAAAATCTACCACCTTGTTC  346

seq1  TCTATAGACATAAATTAGGTACAGGTTCTCATAGAGACATAGGCTTAATT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGACATAAATTAGGTACAGGTTCTCATAGAGACATAGGCTTAATT  396

seq1  CTCCACTCTTCATGAGCAAAAGGTACAGAAAGAAAATTGACCAGGAATGG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTCTTCATGAGCAAAAGGTACAGAAAGAAAATTGACCAGGAATGG  446

seq1  AGGCTTACTTGGTCAGTAAGCGTGAGCAGAATTATAAACCAGGAATGCTA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTACTTGGTCAGTAAGCGTGAGCAGAATTATAAACCAGGAATGCTA  496

seq1  GCTAGAGAAATACACTAAGATGGCCTGAAGTCGTTAGATTCCTGAGTCCC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGAAATACACTAAGATGGCCTGAAGTCGTTAGATTCCTGAGTCCC  546

seq1  AGTCAGCCAGCATCTCCAGCATGCCAAACCCAGGCTTCTGACCCTCATCT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCCAGCATCTCCAGCATGCCAAACCCAGGCTTCTGACCCTCATCT  596

seq1  GACGTGAGCACGAGGATGCCATCAGGCAAAGTTCCTTGCCAAACAAATCG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGAGCACGAGGATGCCATCAGGCAAAGTTCCTTGCCAAACAAATCG  646

seq1  CATCGTGTCACTGTCTGCTTCTGCACAGACAGGGTTTGGCTTTCTTCTTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGTGTCACTGTCTGCTTCTGCACAGACAGGGTTTGGCTTTCTTCTTG  696

seq1  TTTACTTTAACTTTTATTAATTTTTATAAAAATAATTAGAAAACAGAAAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTTAACTTTTATTAATTTTTATAAAAATAATTAGAAAACAGAAAT  746

seq1  CTAACACAATGATTAAAATGACCAAATTCTAGATTAATCTAAATTAATTA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACAATGATTAAAATGACCAAATTCTAGATTAATCTAAATTAATTA  796

seq1  AATATACACTTGGTTATGAAGGAAAATAAACAATATTAAAGGCATGAAAC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACACTTGGTTATGAAGGAAAATAAACAATATTAAAGGCATGAAAC  846

seq1  ACAGTAAATGTTCTTACACTTAGGAATTTCTTTTAAAAGTCTAAGAATTT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAAATGTTCTTACACTTAGGAATTTCTTTTAAAAGTCTAAGAATTT  896

seq1  ATTCAACTTTAAGCTCTCCAGCATCAGCACCCCTCATAAATGAACTGTTA  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACTTTAAGCTCTCCAGCATCAGCACCCCTCATAAATGAACTGTTA  946

seq1  GACTTTTAACTGGTCAATGTTGAACACAGAAGAGAATCAAGAACAAAAAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTAACTGGTCAATGTTGAACACAGAAGAGAATCAAGAACAAAAAA  996

seq1  GGGGTTTTCAATTTTCTTACAGTTTTCAACCTATAATAGAAATAATAAAG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTTCAATTTTCTTACAGTTTTCAACCTATAATAGAAATAATAAAG  1046

seq1  ATTATTCAGATAATCCCTGTAAATGTTCCAAAGAGTTCATGAAGCCCCTG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCAGATAATCCCTGTAAATGTTCCAAAGAGTTCATGAAGCCCCTG  1096

seq1  GACCAGTATTATCTATCAATTTAGCAAGCAACCACAATTTGTATAAATGT  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTATTATCTATCAATTTAGCAAGCAACCACAATTTGTATAAATGT  1146

seq1  TTCTAACTTCTGACTCAGAAATTCGGGAAGGAATTC  1173
      ||||||||||||||||||||||||||||||||||||
seq2  TTCTAACTTCTGACTCAGAAATTCGGGAAGGAATTC  1182

seq1: chr13_92958205_92959382
seq2: B6Ng01-191I16.g_68_1257

seq1  GAATTCTTCTGACTCCAGGGAAACTTTTGACATACTCACTCCCACAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGACTCCAGGGAAACTTTTGACATACTCACTCCCACAGCCT  50

seq1  ATCCAGCCCCATTCGGACATGGCCTCACTGGGAATGTATGATGCATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCCCCATTCGGACATGGCCTCACTGGGAATGTATGATGCATTTTT  100

seq1  ACTGTGAAAACGGTCATTTAGCCTGATGGCAAAGCCCATCTCTTCTAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAAAACGGTCATTTAGCCTGATGGCAAAGCCCATCTCTTCTAAAA  150

seq1  CTCTACTCTAGCCCTCCTAGAACACAGCGTGGGAGTGTGTCCTCAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTCTAGCCCTCCTAGAACACAGCGTGGGAGTGTGTCCTCAAAGCA  200

seq1  CACCCCCCGGTAAGATTTCAATTTTAATTAATTTTGTAATTGATGACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCCGGTAAGATTTCAATTTTAATTAATTTTGTAATTGATGACATT  250

seq1  TTAGGGAAACATATGATACAGAAGTCAGGTATGCCTTTTTGAAATAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGAAACATATGATACAGAAGTCAGGTATGCCTTTTTGAAATAGTCA  300

seq1  ATTTTTGCTAGCTTTCTGATTAAAGAACTCAAGAAGAACTCAAAGGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCTAGCTTTCTGATTAAAGAACTCAAGAAGAACTCAAAGGAGAA  350

seq1  GAAAAGAAAGACATCTTCCAGCACTTCTAACTCACACATAACCAATACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAAAGACATCTTCCAGCACTTCTAACTCACACATAACCAATACTG  400

seq1  CAATTCAGTAATTTAAAATAATGACAACTGAGCCAGGCAGTGGTGACGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCAGTAATTTAAAATAATGACAACTGAGCCAGGCAGTGGTGACGCA  450

seq1  CACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAGAT  500

seq1  CGAGATCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTATAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGAGCTATAC  550

seq1  AGAGAAACCCTGTCTTGAAAAAACCAAAACAAACAAACAACAAAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCCTGTCTTGAAAAAACCAAAACAAACAAACAACAAAAAAAAA  600

seq1  ATAATGACAACTGGTTTTCTAGCTTCCATTCACATTGTTAAGTGAATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGACAACTGGTTTTCTAGCTTCCATTCACATTGTTAAGTGAATCCC  650

seq1  CACTGTGCAAGGACCAGCATCTTCAGAGCTGAACCCACTGAATACCAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTGCAAGGACCAGCATCTTCAGAGCTGAACCCACTGAATACCAGCT  700

seq1  CCTGACATTCCTCCTCTCCCACCACTGCCTTCTGTCCTGCAGACTTCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATTCCTCCTCTCCCACCACTGCCTTCTGTCCTGCAGACTTCAGT  750

seq1  ATTCTAGGCGCATGGTCTTTTTGTAACTGTCCTTTTCACATCTTTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGCGCATGGTCTTTTTGTAACTGTCCTTTTCACATCTTTTAAAA  800

seq1  GTCCATCCATGTTGTACATCTAGCATCCATAAAGTACATCTAGCATGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCCATGTTGTACATCTAGCATCCATAAAGTACATCTAGCATGTAC  850

seq1  TAGAATTTCCTTTCTTTACAATTTTAAAA-TTGTTGCACCTGTGTGTTTT  899
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAGAATTTCCTTTCTTTACAATTTTAAAATTTGTTGCACCTGTGTGTTTT  900

seq1  GCCTGCAT-ATGTCTGTGCACATGCATGTCTGGTACCCACAGAAGCTAGA  948
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCATAATGTCTGTGCACATGCATGTCTGGTACCCACAGAAGCTAGA  950

seq1  AG-AGATGGG-CAAAGCTGAAGTAGCATGGCTTGAG-CCACCAT-GTGTT  994
      || ||||||| ||||||||||||||||||||||||| |||| || |||||
seq2  AGAAGATGGGCCAAAGCTGAAGTAGCATGGCTTGAGCCCACAATGGTGTT  1000

seq1  GCTGGG-AACTG-AACCCA-GGTCC-TTTCGAACAGCTAGT-GAG--CTT  1037
      |||||| ||||| |||||| ||||| ||||||||||||||| |||   ||
seq2  GCTGGGAAACTGAAACCCAGGGTCCTTTTCGAACAGCTAGTGGAGGCTTT  1050

seq1  AACTGC-TGAACCA---TCTCTTCAGCCCTAGCTAC-TAT--GTTGACTA  1080
      |||||| |||||||   ||| ||||| ||||||||| |||   ||||| |
seq2  AACTGCTTGAACCATTCTCTTTTCAGGCCTAGCTACTTATTGTTTGACCA  1100

seq1  TGTG-TATAGTTCATTGAAACACAGTCAGG-ATGCAGAAACTTTAAAGCT  1128
      |||| ||||| |||||||| ||| |||||| |||||| ||| ||||  ||
seq2  TGTGTTATAG-TCATTGAACCACGGTCAGGAATGCAG-AACCTTAAGCCT  1148

seq1  TTCTTCCTTATACTTTTCCCAAATTCTAATCCAAGCATCCACTAATCGGT  1178
      ||||||| |  |||||     | |||  |||||||||| |||| ||||||
seq2  TTCTTCCCTTAACTTT----CAGTTC--ATCCAAGCAT-CACT-ATCGGT  1190