BAC Information

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BAC

Clone NameB6Ng01-192I14
Chromosome13 (Build37)
Map Location 29,338,145 - 29,468,912
singlet/doubletdoublet
Overlap geneCdkal1
Upstream geneLOC100042388, LOC100042393, LOC100042399, Ppia-ps13_297.1, LOC626683, 2610307P16Rik, Sox4, LOC100041135
Downstream geneE2f3, Mboat1, Agtr1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192I14.bB6Ng01-192I14.g
ACCGA015752GA015753
length1,195553
definitionB6Ng01-192I14.b B6Ng01-192I14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,338,145 - 29,339,334)(29,468,354 - 29,468,912)
sequence
gaattcaacaacattggaaattggcccactaagaaatagcaagcaaccac
actccaaggtgatcccagcattccgtgcccttgtgtttccctgatcacct
taagaccgggcatggacccttgtgtctttttgtggtcctgtagctgaaac
ccaaggcctaaggaacacaggaatctatttgaccacatccctcggcagag
catttccattctttaggcccctcggtttgtgacattttgttatggcagtc
tgaactgactaatagacacctggctctgctgtgtgttttgttgtagatta
taatgctttccaagtttgctttttcttttcaaagttgttattttaatacc
gaaactatttcatgaatgagaacaaagaatctaagtgcttaacatagctc
aactgaacaacctgaaactgctgttgctgagtgaatacacatgtaataag
caaaaagaaggggaaagaacacaacaaagccagacctgagaacacatact
atccgttgcaaggaggaaagcattatctattacagaaaaactggacacag
gcccaatgcctaataattatattagaataattatataacaaccatatatt
aagacgatatatgatagttttgaaaaaccattagaagaccaattagcagc
ctaagaaaatactaatagctaaggagaaaatgttacaaaatattacaagc
aacacaaaatccagtatggcggtgtgtgcatttatgagtgaattgtagta
ttttcccttatccttagattacatggaccatgggcagtcatgctccagct
gtagctagtcactggctctcaggaactaggttgtgtttctcttttgtttt
ttaagaaggaagtgggcactattggcatctctagtactaagagtaagcat
ggtgaccctgtatcagggaatcatcctttccactgcagctaaagaacagg
gaaccctgccatgaaactgcaactcaggcagtccagatgtgggagcagca
cctccacacgtggtccagattattcatctgccatgactaaggtgccttca
ttgcctcctccccacttgacaatctgttcccagagctgtcaccttaactg
aactcacggagagcgcttggccctcagaagttgaattgacattcttagcc
aggcgcgaagaaggcttgtgaatgcttcttagggcaacctccccg

cttctttcattccccatcattttaggcttgcctgaatcaataggtttgtg
cctttagtgattgttacagtgtctttgctcttgccttttgtgttgctcta
gacacatatatgagtagcaaatgaagagagtgccatatgggatgctgaaa
gcatctacaggggtctgggtgtcaagagctgtctcacacagcagccttca
gcagagatgcttagagtctctgactctgtgaagtgcaagcagcacagggg
atgtgaatctgaaacccagagagctccatggataggatagttattgcagc
ctccctctatcataggcgcaaatcgaaacatggacattatctaaggccct
tatcaaaaattacaaaagtaaacccgctagggaaaaaatatacaactggg
tagagtccaagttagagacttttcagaatattaattaatgttccatggta
cagattcagacagatccatatacccactaaaggctgattcgccattcagg
aagtactaagaattgttatggcggggaagtaggagtgggtgggttgggga
gca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_29338145_29339334
seq2: B6Ng01-192I14.b_39_1233

seq1  GAATTCAACAACATTGGAAATTGGCCCACTAAGAAATAGCAAGCAACCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAACATTGGAAATTGGCCCACTAAGAAATAGCAAGCAACCAC  50

seq1  ACTCCAAGGTGATCCCAGCATTCCGTGCCCTTGTGTTTCCCTGATCACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAGGTGATCCCAGCATTCCGTGCCCTTGTGTTTCCCTGATCACCT  100

seq1  TAAGACCGGGCATGGACCCTTGTGTCTTTTTGTGGTCCTGTAGCTGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACCGGGCATGGACCCTTGTGTCTTTTTGTGGTCCTGTAGCTGAAAC  150

seq1  CCAAGGCCTAAGGAACACAGGAATCTATTTGACCACATCCCTCGGCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCCTAAGGAACACAGGAATCTATTTGACCACATCCCTCGGCAGAG  200

seq1  CATTTCCATTCTTTAGGCCCCTCGGTTTGTGACATTTTGTTATGGCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCATTCTTTAGGCCCCTCGGTTTGTGACATTTTGTTATGGCAGTC  250

seq1  TGAACTGACTAATAGACACCTGGCTCTGCTGTGTGTTTTGTTGTAGATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGACTAATAGACACCTGGCTCTGCTGTGTGTTTTGTTGTAGATTA  300

seq1  TAATGCTTTCCAAGTTTGCTTTTTCTTTTCAAAGTTGTTATTTTAATACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCTTTCCAAGTTTGCTTTTTCTTTTCAAAGTTGTTATTTTAATACC  350

seq1  GAAACTATTTCATGAATGAGAACAAAGAATCTAAGTGCTTAACATAGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTATTTCATGAATGAGAACAAAGAATCTAAGTGCTTAACATAGCTC  400

seq1  AACTGAACAACCTGAAACTGCTGTTGCTGAGTGAATACACATGTAATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGAACAACCTGAAACTGCTGTTGCTGAGTGAATACACATGTAATAAG  450

seq1  CAAAAAGAAGGGGAAAGAACACAACAAAGCCAGACCTGAGAACACATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAAGGGGAAAGAACACAACAAAGCCAGACCTGAGAACACATACT  500

seq1  ATCCGTTGCAAGGAGGAAAGCATTATCTATTACAGAAAAACTGGACACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTTGCAAGGAGGAAAGCATTATCTATTACAGAAAAACTGGACACAG  550

seq1  GCCCAATGCCTAATAATTATATTAGAATAATTATATAACAACCATATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAATGCCTAATAATTATATTAGAATAATTATATAACAACCATATATT  600

seq1  AAGACGATATATGATAGTTTTGAAAAACCATTAGAAGACCAATTAGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACGATATATGATAGTTTTGAAAAACCATTAGAAGACCAATTAGCAGC  650

seq1  CTAAGAAAATACTAATAGCTAAGGAGAAAATGTTACAAAATATTACAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAAATACTAATAGCTAAGGAGAAAATGTTACAAAATATTACAAGC  700

seq1  AACACAAAATCCAGTATGGCGGTGTGTGCATTTATGAGTGAATTGTAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAAAATCCAGTATGGCGGTGTGTGCATTTATGAGTGAATTGTAGTA  750

seq1  TTTTCCCTTATCCTTAGATTACATGGACCATGGGCAGTCATGCTCCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTATCCTTAGATTACATGGACCATGGGCAGTCATGCTCCAGCT  800

seq1  GTAGCTAGTCACTGGCTCTCAGGAACTA-GTTGTGTTTCTCTTTTGTTTT  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTAGCTAGTCACTGGCTCTCAGGAACTAGGTTGTGTTTCTCTTTTGTTTT  850

seq1  TTAAAGAAGGAAGGTGGCACTATTGGCATCTCTAGTACTAAGAGTAAGCA  899
      || ||||||||||  |||||||||||||||||||||||||||||||||||
seq2  TT-AAGAAGGAAGTGGGCACTATTGGCATCTCTAGTACTAAGAGTAAGCA  899

seq1  TGGTGACCCTGTATCAGGGAATCATCC-TTCCACTGCAGCTAAAG-ACAA  947
      ||||||||||||||||||||||||||| ||||||||||||||||| ||| 
seq2  TGGTGACCCTGTATCAGGGAATCATCCTTTCCACTGCAGCTAAAGAACAG  949

seq1  GGAACCCTGCCATGAAACTGCAACTCAGGCAGTCCAGATGTGGGAGCAGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCTGCCATGAAACTGCAACTCAGGCAGTCCAGATGTGGGAGCAGC  999

seq1  ACCTCCACACGTGGTCCAGA-TATTCATCTGCCATGACTAAGGTGCCTTC  1046
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCTCCACACGTGGTCCAGATTATTCATCTGCCATGACTAAGGTGCCTTC  1049

seq1  ATTGCCT-CTCCCACTTTGACCATCTG-TCCCAGAGCTGTCACCTTAACT  1094
      ||||||| |||||   ||||| ||||| ||||||||||||||||||||||
seq2  ATTGCCTCCTCCCCACTTGACAATCTGTTCCCAGAGCTGTCACCTTAACT  1099

seq1  GAACTCACGGAGGAGCGCTT-GCCCTCAGACGTGAGATGGAACATTC-TA  1142
      ||||||||||| |||||||| ||||||||| ||   || | |||||| ||
seq2  GAACTCACGGA-GAGCGCTTGGCCCTCAGAAGTTGAATTG-ACATTCTTA  1147

seq1  G-CAGGCGCAGAGAAAGGCTTGTGAGTGCTTCTTACAGCAAACTCCCCG  1190
      | ||||||| ||  ||||||||||| |||||||||  |||| |||||||
seq2  GCCAGGCGC-GAAGAAGGCTTGTGAATGCTTCTTAGGGCAACCTCCCCG  1195


seq1: chr13_29468354_29468912
seq2: B6Ng01-192I14.g_70_628 (reverse)

seq1  TGCTCCCCAACCCACCCACTCCTACTTCCCCGCCATAACAATTCTTAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCAACCCACCCACTCCTACTTCCCCGCCATAACAATTCTTAGTA  50

seq1  CTTCCTGAATGGCGAATCAGCCTTTAGTGGGTATATGGATCTGTCTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAATGGCGAATCAGCCTTTAGTGGGTATATGGATCTGTCTGAAT  100

seq1  CTGTACCATGGAACATTAATTAATATTCTGAAAAGTCTCTAACTTGGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCATGGAACATTAATTAATATTCTGAAAAGTCTCTAACTTGGACT  150

seq1  CTACCCAGTTGTATATTTTTTCCCTAGCGGGTTTACTTTTGTAATTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCAGTTGTATATTTTTTCCCTAGCGGGTTTACTTTTGTAATTTTTG  200

seq1  ATAAGGGCCTTAGATAATGTCCATGTTTCGATTTGCGCCTATGATAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGCCTTAGATAATGTCCATGTTTCGATTTGCGCCTATGATAGAGG  250

seq1  GAGGCTGCAATAACTATCCTATCCATGGAGCTCTCTGGGTTTCAGATTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGCAATAACTATCCTATCCATGGAGCTCTCTGGGTTTCAGATTCA  300

seq1  CATCCCCTGTGCTGCTTGCACTTCACAGAGTCAGAGACTCTAAGCATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTGTGCTGCTTGCACTTCACAGAGTCAGAGACTCTAAGCATCTC  350

seq1  TGCTGAAGGCTGCTGTGTGAGACAGCTCTTGACACCCAGACCCCTGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAAGGCTGCTGTGTGAGACAGCTCTTGACACCCAGACCCCTGTAGA  400

seq1  TGCTTTCAGCATCCCATATGGCACTCTCTTCATTTGCTACTCATATATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAGCATCCCATATGGCACTCTCTTCATTTGCTACTCATATATGT  450

seq1  GTCTAGAGCAACACAAAAGGCAAGAGCAAAGACACTGTAACAATCACTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGAGCAACACAAAAGGCAAGAGCAAAGACACTGTAACAATCACTAA  500

seq1  AGGCACAAACCTATTGATTCAGGCAAGCCTAAAATGATGGGGAATGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAAACCTATTGATTCAGGCAAGCCTAAAATGATGGGGAATGAAAG  550

seq1  AAGGAATTC  559
      |||||||||
seq2  AAGGAATTC  559


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