BAC Information

Click to search

BAC

Clone NameB6Ng01-192K10
Chromosome13 (Build37)
Map Location 65,182,131 - 65,310,424
singlet/doubletdoublet
Overlap geneHiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f
Upstream geneHsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470, Cntnap3, EG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274
Downstream geneENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722, LOC665851, Vmn2r-ps99, LOC628794, EG665897, LOC100041855, EG628746, LOC100042434, LOC100041892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192K10.bB6Ng01-192K10.g
ACCGA015836GA015837
length1,1361,183
definitionB6Ng01-192K10.b B6Ng01-192K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,182,131 - 65,183,252)(65,309,226 - 65,310,424)
sequence
gaattctctgctgtgcctctccagagcgcacccactgcagccattcaaaa
cactgggccatctcaaggaaactcacttgcttgccatagtctttcctaga
tggcttctttcaaatactggctaagatactattccatcgtctaagaaaat
taaaattaaaacaagggaaaaaaaagacacttgagaaaaatcctcactcc
tctaagataattaaattatctggattcattatactgaaggagaaaaagtg
attaaattcctatcatgttttagaataagcataggacccaaatataaaat
agaaattattcatatcctatatatcccttatacacatagattaagtcatt
ttatacaatttttgaaatactttttcatttctttaaatacttgttcatta
tgatgaggtaaagtttatatacacttgacctatttataattgtgttatat
cagtgctcaaaaacattgggatcatttcacattttgaatatttggattag
gagcagtggccaaaataattttatttacataggactcaaaacacaccagt
atgatagtgaagggctcagcaacttaccatgggttaatcctcattagtgg
gatagggaagcaggtaaagaagaccgtgccaaggagaaagggcttcctgc
cccaaacatcagagagagcgcctatgagcggagcactcagaaaagagagc
aggccctagagaataaacagaagcaaaaggttagatttaaaatgtgagcc
ctctattacttataatactttcttccttccttccttccttccttccttcc
atccattcttccttccttccttccctcctttcttctaaatctattggctt
caattcttcttctcaaaaaagtaacacgtgacactgaatggaggacgaaa
aagaatccaacttttagacaatccccaccaccgtctcctcttaaccttca
tcttgctggatccgaaagcataacaggataagaattcccttacctgcact
ccatcttccctgccctccagaatctcctggggcacccctcccagcttcct
gagcatgtgctattctcgcctgaaaccccattcctcccactacctctcga
accaccctactagtgaccggacttgatctggaacca
gaattcaatctactgagatagatacagaaatctgtggcactgtggttttc
atttttctaatgatgttgggtatgttttaatatgcttgacttatatctgt
gtatctttttttgataaagtatctgttcaaaaaatatttttgagaccagg
tcttactatgtaaccctagctggcttagaacatggaatgtagactaggct
ggccttggactcatagaaatcagccttcccctgtcttccaaatgtttggc
attaaaggaatatgccactacacattggtaaaatttttacttagttttaa
gtgtgagtttttgaaaattaggctttgagaacacttgatataatttgtat
ataattttaattgaaaaccatatttaatttgcaaataatttcccttttgt
ctttacattctcttaactattttttaaatcaaaatataattgcatccctt
catttttactctttaatctatttaacatacctcttcctctgattcctttt
gaaatcatgacctcttattactttaattgttgttattactggtatatgat
taaatatttaaatacatcctactgattctgtttagtgttgcctccaaggc
cacagcaactccgcacagtgaacataataaacaacaacagaacactgtca
cacttgtacatttctaagctagactgggcaccccagaaatcttgctcatt
gtgggtttttacagcttctcctgattgaaaaatgctccacacccagatga
taatgtcagaactcctagggcatcagacaaggacttcacaggaagacatc
tggagggcacagaagacaatgaacttctccacacataatttcaatttcat
atagctaaagatgccataaactactaaaaaatagatatgacaccacttgc
caaggttccgtgtaaatctgagagatgtcagagatgctgtggagggccac
cgagttagctcttttggtaaagtgcttgcatcaagtctgatgacctgaat
tcaatctggatcaacacatgcaggagagaactgctcagaaaatactcttc
tcttaaatattcaaataaaatagtaactcccttaaggttaattagaatac
atgtgcaatgtgtggcatattagtggtagaagactctagaaccagtgctt
tcgcacccttgtgtgtgattggtcacaactact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_65182131_65183252
seq2: B6Ng01-192K10.b_47_1182

seq1  GAATTCTCTGCTGTGCCTCTCCAGAGCGCACCCACTGCAGCCATTCAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTGTGCCTCTCCAGAGCGCACCCACTGCAGCCATTCAAAA  50

seq1  CACTGGGCCATCTCAAGGAAACTCACTTGCTTGCCATAGTCTTTCCTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCCATCTCAAGGAAACTCACTTGCTTGCCATAGTCTTTCCTAGA  100

seq1  TGGCTTCTTTCAAATACTGGCTAAGATACTATTCCATCGTCTAAGAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTTTCAAATACTGGCTAAGATACTATTCCATCGTCTAAGAAAAT  150

seq1  TAAAATTAAAACAAGGGAAAAAAAAGACACTTGAGAAAAATCCTCACTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATTAAAACAAGGGAAAAAAAAGACACTTGAGAAAAATCCTCACTCC  200

seq1  TCTAAGATAATTAAATTATCTGGATTCATTATACTGAAGGAGAAAAAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATAATTAAATTATCTGGATTCATTATACTGAAGGAGAAAAAGTG  250

seq1  ATTAAATTCCTATCATGTTTTAGAATAAGCATAGGACCCAAATATAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTCCTATCATGTTTTAGAATAAGCATAGGACCCAAATATAAAAT  300

seq1  AGAAATTATTCATATCCTATATATCCCTTATACACATAGATTAAGTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTATTCATATCCTATATATCCCTTATACACATAGATTAAGTCATT  350

seq1  TTATACAATTTTTGAAATACTTTTTCATTTCTTTAAATACTTGTTCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACAATTTTTGAAATACTTTTTCATTTCTTTAAATACTTGTTCATTA  400

seq1  TGATGAGGTAAAGTTTATATACACTTGACCTATTTATAATTGTGTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGAGGTAAAGTTTATATACACTTGACCTATTTATAATTGTGTTATAT  450

seq1  CAGTGCTCAAAAACATTGGGATCATTTCACATTTTGAATATTTGGATTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCAAAAACATTGGGATCATTTCACATTTTGAATATTTGGATTAG  500

seq1  GAGCAGTGGCCAAAATAATTTTATTTACATAGGACTCAAAACACACCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGTGGCCAAAATAATTTTATTTACATAGGACTCAAAACACACCAGT  550

seq1  ATGATAGTGAAGGGCTCAGCAACTTACCATGGGTTAATCCTCATTAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATAGTGAAGGGCTCAGCAACTTACCATGGGTTAATCCTCATTAGTGG  600

seq1  GATAGGGAAGCAGGTAAAGAAGACCGTGCCAAGGAGAAAGGGCTTCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGAAGCAGGTAAAGAAGACCGTGCCAAGGAGAAAGGGCTTCCTGC  650

seq1  CCCAAACATCAGAGAGAGCGCCTATGAGCGGAGCACTCAGAAAAGAGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACATCAGAGAGAGCGCCTATGAGCGGAGCACTCAGAAAAGAGAGC  700

seq1  AGGCCCTAGAGAATAAACAGAAGCAAAAGGTTAGATTTAAAATGTGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTAGAGAATAAACAGAAGCAAAAGGTTAGATTTAAAATGTGAGCC  750

seq1  CTCTATTACTTATAATACTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTACTTATAATACTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTCC  800

seq1  TTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTAAATCTATTGGCT  850
       ||| | ||||||||||||||||| ||||||| |||||||||||||||||
seq2  ATCCATTCTTCCTTCCTTCCTTCCCTCCTTTC-TTCTAAATCTATTGGCT  849

seq1  TCAATTCCTCTTCTCAAAAAAGTAACACGTGACACTGAAT-GAGGAAGAA  899
      ||||||| |||||||||||||||||||||||||||||||| ||||| |||
seq2  TCAATTCTTCTTCTCAAAAAAGTAACACGTGACACTGAATGGAGGACGAA  899

seq1  AAAGAATCCAAC-TTTAGACAAT-CCCACCACC-TCTCCTCCT-ACCTTC  945
      |||||||||||| |||||||||| ||||||||| ||||||| | ||||||
seq2  AAAGAATCCAACTTTTAGACAATCCCCACCACCGTCTCCTCTTAACCTTC  949

seq1  ATC-TGCTGG-TCCAGAAGCAT-ACAGGATA--GATTCCCTT-CCTGCAC  989
      ||| |||||| |||  |||||| ||||||||   |||||||| |||||||
seq2  ATCTTGCTGGATCCGAAAGCATAACAGGATAAGAATTCCCTTACCTGCAC  999

seq1  T-CATCTTCCTTG-CCTCCAGAATCTTCTGGGGCACCCC-CCCAGCTTTC  1036
      | |||||||| || |||||||||||| |||||||||||| |||||| |||
seq2  TCCATCTTCCCTGCCCTCCAGAATCTCCTGGGGCACCCCTCCCAGC-TTC  1048

seq1  CTGAGCCATGTGCTATCCTCG-CTGAACCCCCATT-CTCCCACTACCTCT  1084
      ||||| |||||||||| |||| ||||| ||||||| ||||||||||||||
seq2  CTGAG-CATGTGCTATTCTCGCCTGAAACCCCATTCCTCCCACTACCTCT  1097

seq1  CAGACCACCTTACTA-TGACCCGACCTGATCTGGAACCA  1122
      |  |||||| ||||| ||||| ||| |||||||||||||
seq2  CGAACCACCCTACTAGTGACCGGACTTGATCTGGAACCA  1136

seq1: chr13_65309226_65310424
seq2: B6Ng01-192K10.g_66_1247 (reverse)

seq1  GTAGTT-TGACCAACCACACACAAGGGGTCGAAAAACACTGG-TCTAGGA  48
      |||||| ||||||| ||||||||||||  || ||| |||||| |||||  
seq2  GTAGTTGTGACCAATCACACACAAGGGTGCG-AAAGCACTGGTTCTAG--  47

seq1  AGTCCTCCTTCACCACTATAATCCCACACATTGCACATGTA-TCTATTTA  97
      |||| ||    |||||||  || |||||||||||||||||| |||| |||
seq2  AGTCTTC---TACCACTAATATGCCACACATTGCACATGTATTCTAATTA  94

seq1  CTTTTAGGGAAGTTTATTTAATTTTTTATTT-AATATTTAAGAG-AGAGT  145
         ||| || ||     ||| | |||||||| |||||||||||| |||||
seq2  ACCTTAAGGGAG-----TTACTATTTTATTTGAATATTTAAGAGAAGAGT  139

seq1  AATTTTCTGGAGCCAGTTCTCTCCTTGCATGTGTTGATCCCAGGAATTGA  195
       ||||||| ||| ||||||||||| ||||||||||||| ||||  |||||
seq2  -ATTTTCT-GAG-CAGTTCTCTCC-TGCATGTGTTGAT-CCAG--ATTGA  182

seq1  ATTCAGGTCATCAGACTTGATGGCAAGCACCTTTACCAAAGGAGCTAACT  245
      ||||||||||||||||||||| ||||||| |||||||||| |||||||||
seq2  ATTCAGGTCATCAGACTTGAT-GCAAGCA-CTTTACCAAAAGAGCTAACT  230

seq1  CGGTGGCCCTCCACAGCATCTCTGACATCTCTCAGATTTACACGGAACCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGGCCCTCCACAGCATCTCTGACATCTCTCAGATTTACACGGAACCT  280

seq1  TGGCAAGTGGTGTCATATCTTATTTTTTAGTAGTTTATGGCATCTTTAGC  345
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGGCAAGTGGTGTCATATC-TATTTTTTAGTAGTTTATGGCATCTTTAGC  329

seq1  TATATGAAATTGAAATTATGTGTGGAGAAGTTCATTGTCTTCTGTGCCCT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAAATTGAAATTATGTGTGGAGAAGTTCATTGTCTTCTGTGCCCT  379

seq1  CCAGATGTCTTCCTGTGAAGTCCTTGTCTGATGCCCTAGGAGTTCTGACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTCTTCCTGTGAAGTCCTTGTCTGATGCCCTAGGAGTTCTGACA  429

seq1  TTATCATCTGGGTGTGGAGCATTTTTCAATCAGGAGAAGCTGTAAAAACC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCTGGGTGTGGAGCATTTTTCAATCAGGAGAAGCTGTAAAAACC  479

seq1  CACAATGAGCAAGATTTCTGGGGTGCCCAGTCTAGCTTAGAAATGTACAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGAGCAAGATTTCTGGGGTGCCCAGTCTAGCTTAGAAATGTACAA  529

seq1  GTGTGACAGTGTTTCTGTTGTTGTTTATTATGTTCACTGTGCGGAGTTGC  595
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACAGTG-TTCTGTTGTTGTTTATTATGTTCACTGTGCGGAGTTGC  578

seq1  TGTGGCCTTGGAGGCAACACTAAACAGAATCAGTAGGATGTATTTAAATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTTGGAGGCAACACTAAACAGAATCAGTAGGATGTATTTAAATA  628

seq1  TTTAATCATATACCAGTAATAACAACAATTAAAGTAATAAGAGGTCATGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCATATACCAGTAATAACAACAATTAAAGTAATAAGAGGTCATGA  678

seq1  TTTCAAAAGGAATCAGAGGAAGAGGTATGTTAAATAGATTAAAGAGTAAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAGGAATCAGAGGAAGAGGTATGTTAAATAGATTAAAGAGTAAA  728

seq1  AATGAAGGGATGCAATTATATTTTGATTTAAAAAATAGTTAAGAGAATGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGGGATGCAATTATATTTTGATTTAAAAAATAGTTAAGAGAATGT  778

seq1  AAAGACAAAAGGGAAATTATTTGCAAATTAAATATGGTTTTCAATTAAAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAAAGGGAAATTATTTGCAAATTAAATATGGTTTTCAATTAAAA  828

seq1  TTATATACAAATTATATCAAGTGTTCTCAAAGCCTAATTTTCAAAAACTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATACAAATTATATCAAGTGTTCTCAAAGCCTAATTTTCAAAAACTC  878

seq1  ACACTTAAAACTAAGTAAAAATTTTACCAATGTGTAGTGGCATATTCCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAAAACTAAGTAAAAATTTTACCAATGTGTAGTGGCATATTCCTT  928

seq1  TAATGCCAAACATTTGGAAGACAGGGGAAGGCTGATTTCTATGAGTCCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAAACATTTGGAAGACAGGGGAAGGCTGATTTCTATGAGTCCAA  978

seq1  GGCCAGCCTAGTCTACATTCCATGTTCTAAGCCAGCTAGGGTTACATAGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTAGTCTACATTCCATGTTCTAAGCCAGCTAGGGTTACATAGT  1028

seq1  AAGACCTGGTCTCAAAAATATTTTTTGAACAGATACTTTATCAAAAAAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTGGTCTCAAAAATATTTTTTGAACAGATACTTTATCAAAAAAAG  1078

seq1  ATACACAGATATAAGTCAAGCATATTAAAACATACCCAACATCATTAGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGATATAAGTCAAGCATATTAAAACATACCCAACATCATTAGAA  1128

seq1  AAATGAAAACCACAGTGCCACAGATTTCTGTATCTATCTCAGTAGATTGA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAACCACAGTGCCACAGATTTCTGTATCTATCTCAGTAGATTGA  1178

seq1  ATTC  1199
      ||||
seq2  ATTC  1182