BAC Information

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BAC

Clone NameB6Ng01-193H14
Chromosome13 (Build37)
Map Location 40,700,452 - 40,838,771
singlet/doubletdoublet
Overlap geneLOC100039048, Tcfap2a
Upstream geneLOC382747, A230103O09Rik, Ofcc1, LOC666894
Downstream geneEG621629, EG637157, LOC100039105, Gcnt2, Pak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193H14.bB6Ng01-193H14.g
ACCGA016435GA016436
length2371,033
definitionB6Ng01-193H14.b B6Ng01-193H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,838,535 - 40,838,771)(40,700,452 - 40,701,469)
sequence
cacactggaaattcttccagccagatctgaggcaaacttctaactccctt
tgcccctctggactcaggctggtcttttaggacccaacatgatctcttaa
agtctaatggccacagacatttcagactcgggtaacaggcgccaagactc
cccaatttagggtggcttgtacgcacaggagttcaaactcccaaatgtgg
atgtgtatgcttcatggattatgatgggggggggttt
gaattcacctctctgccttccccaataccagaattacaagaggatgtcac
tgacaggagtaggaggagccccaactgtcatctaagtggcatttgagaat
gactttttaaaggaggaatgagcccctgtagtgactgaagcgaggaaccg
gttgtgtttgacgttgcacaaatactggtcctcagtgatcaataggaggc
gccaaggcgcagcacagttccagcagagatcatggcagctcctggtgcaa
aggaggttagaacatcacaatagcaatcagaaactacaaaaaaaaaaaga
aaaaaaaaaaaaaaccctacacagggctctgctgtcccagctcctgactg
gagtcccgctttcagccaactccagggtggtgcttgactctgtggagggg
ggaaaggaagaataaggtctccagagatcctaagaccttcgaaggagagc
ctgctccaggcctcaagactggacagatcccaatgacacatgagatctgc
gactggatctaccactaagaagactttggggcttgccagagataagagag
ccatggttctgccctgctcagacttcatacagctccttacgcatcctgag
accctggaaatgcttagagctgtgatattttgtgacctcactgctaggca
cctggagcctaccgagttagacgtaggccctgccaacctccttccatcat
ctggcatctcgtttctacttagccattcaagtgtctactctcccattgaa
aatactccggcgttggtgaatgaaagcccccactctgtccttgggaggaa
ggcaagacaagaaccagaattggaggatggactgcctcagcatcacatct
ggcctctgtacatgagtgctagatgcagcacccagcttcttcagactaga
gcagcaagtattacatccaatccaagccactctcgtcagcacccttgctt
cttaacctcttgggcattttgaagtgtaatctttcctccttggagaattg
gctctcttgcccaaccagcttatcttttggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_40838535_40838771
seq2: B6Ng01-193H14.b_47_283 (reverse)

seq1  AAACCCCCCCCCATCATAATCCATGAAGCATACACATCCACATTTGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCCCCCCATCATAATCCATGAAGCATACACATCCACATTTGGGAG  50

seq1  TTTGAACTCCTGTGCGTACAAGCCACCCTAAATTGGGGAGTCTTGGCGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTCCTGTGCGTACAAGCCACCCTAAATTGGGGAGTCTTGGCGCC  100

seq1  TGTTACCCGAGTCTGAAATGTCTGTGGCCATTAGACTTTAAGAGATCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCCGAGTCTGAAATGTCTGTGGCCATTAGACTTTAAGAGATCATG  150

seq1  TTGGGTCCTAAAAGACCAGCCTGAGTCCAGAGGGGCAAAGGGAGTTAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCCTAAAAGACCAGCCTGAGTCCAGAGGGGCAAAGGGAGTTAGAA  200

seq1  GTTTGCCTCAGATCTGGCTGGAAGAATTTCCAGTGTG  237
      |||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCTCAGATCTGGCTGGAAGAATTTCCAGTGTG  237

seq1: chr13_40700452_40701469
seq2: B6Ng01-193H14.g_66_1098

seq1  GAATTCACCTCTCTGCCTTCCCCAATACCAGAATTACAAGAGGATGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCTCTGCCTTCCCCAATACCAGAATTACAAGAGGATGTCAC  50

seq1  TGACAGGAGTAGGAGGAGCCCCAACTGTCATCTAAGTGGCATTTGAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAGTAGGAGGAGCCCCAACTGTCATCTAAGTGGCATTTGAGAAT  100

seq1  GACTTTTTAAAGGAGGAATGAGCCCCTGTAGTGACTGAAGCGAGGAACCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTTTAAAGGAGGAATGAGCCCCTGTAGTGACTGAAGCGAGGAACCG  150

seq1  GTTGTGTTTGACGTTGCACAAATACTGGTCCTCAGTGATCAATAGGAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTTTGACGTTGCACAAATACTGGTCCTCAGTGATCAATAGGAGGC  200

seq1  GCCAAGGCGCAGCACAGTTCCAGCAGAGATCATGGCAGCTCCTGGTGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGCGCAGCACAGTTCCAGCAGAGATCATGGCAGCTCCTGGTGCAA  250

seq1  AGGAGGTTAGAACATCACAATAGCAATCAGAAACTACAAAAAAAAAAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTAGAACATCACAATAGCAATCAGAAACTACAAAAAAAAAAAGA  300

seq1  AAAAAAAAAAAAAACCCTACACAGGGCTCTGCTGTCCCAGCTCCTGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAACCCTACACAGGGCTCTGCTGTCCCAGCTCCTGACTG  350

seq1  GAGTCCCGCTTTCAGCCAACTCCAGGGTGGTGCTTGACTCTGTGGAGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCCGCTTTCAGCCAACTCCAGGGTGGTGCTTGACTCTGTGGAGGGG  400

seq1  GGAAAGGAAGAATAAGGTCTCCAGAGATCCTAAGACCTTCGAAGGAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAAGAATAAGGTCTCCAGAGATCCTAAGACCTTCGAAGGAGAGC  450

seq1  CTGCTCCAGGCCTCAAGACTGGACAGATCCCAATGACACATGAGATCTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAGGCCTCAAGACTGGACAGATCCCAATGACACATGAGATCTGC  500

seq1  GACTGGATCTACCACTAAGAAGACTTTGGGGCTTGCCAGAGATAAGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGATCTACCACTAAGAAGACTTTGGGGCTTGCCAGAGATAAGAGAG  550

seq1  CCATGGTTCTGCCCTGCTCAGACTTCATACAGCTCCTTACGCATCCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGTTCTGCCCTGCTCAGACTTCATACAGCTCCTTACGCATCCTGAG  600

seq1  ACCCTGGAAATGCTTAGAGCTGTGATATTTTGTGACCTCACTGCTAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGAAATGCTTAGAGCTGTGATATTTTGTGACCTCACTGCTAGGCA  650

seq1  CCTGGAGCCTACCGAGTTAGACGTAGGCCCTGCCAACCTCCTTCCATCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCCTACCGAGTTAGACGTAGGCCCTGCCAACCTCCTTCCATCAT  700

seq1  CTGGCATCTCGTTTCTACTTAGCCATTCAAGTGTCTACTCTCCCATTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATCTCGTTTCTACTTAGCCATTCAAGTGTCTACTCTCCCATTGAA  750

seq1  AATACTCCGGCG-TGGTGAATGAAAGCCCCCACTCTGTCCTTGGGAGGAA  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AATACTCCGGCGTTGGTGAATGAAAGCCCCCACTCTGTCCTTGGGAGGAA  800

seq1  GGCAAGACAAGAACCAGAA-TGGAGGATGGACTGCCTCAGCATCACATCT  848
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GGCAAGACAAGAACCAGAATTGGAGGATGGACTGCCTCAGCATCACATCT  850

seq1  GG-CTCTGTACATGAGTGCTAGATGCAGCACCCAGC-TCCTCAGACTAGA  896
      || ||||||||||||||||||||||||||||||||| || ||||||||||
seq2  GGCCTCTGTACATGAGTGCTAGATGCAGCACCCAGCTTCTTCAGACTAGA  900

seq1  GCAGCAAGTATTACATCCAATCCAAGCCAC-CTCGTCAGCACCC-TGCTT  944
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  GCAGCAAGTATTACATCCAATCCAAGCCACTCTCGTCAGCACCCTTGCTT  950

seq1  CTTAA-CTCTT-GGCA-TTTGAAGTGT-ATC-TTCCTC--TGGAGAATTG  987
      ||||| ||||| |||| |||||||||| ||| ||||||  ||||||||||
seq2  CTTAACCTCTTGGGCATTTTGAAGTGTAATCTTTCCTCCTTGGAGAATTG  1000

seq1  --CCTCTTGCCCAACCCAGCTTATC-TTTGGCTC  1018
         ||||||||||| |||||||||| ||||||||
seq2  GCTCTCTTGCCCAA-CCAGCTTATCTTTTGGCTC  1033