BAC Information

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BAC

Clone NameB6Ng01-195L05
Chromosome13 (Build37)
Map Location 24,091,334 - 24,092,260
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195L05.bB6Ng01-195L05.g
ACCGA018046GA018047
length934818
definitionB6Ng01-195L05.b B6Ng01-195L05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggtgtggtggcatgcttgtacttatcctaaagacgtatctta
agttcaagtccagatacacatacatacacacacatataacttaatatata
taacttagttctcaaaatacagtgcatctacaaaaatctgggcatgcaca
gattttgaaagtgtaaatctggacaagaagtgggaaaacgcaaagggata
ggaaaaaaaacgaaaacaaaagcaaaagaaagcacaatatatttatacaa
tgggatagaaaccagctattaaaaaagaaagaaaggctgacaagtactac
ctatgggagaaagttgaaactttggagaaggctggcgggatcagaacaag
atacattgtttcactgcacttgggaaaaccatgggcgagtccatcccagg
agcttgccattggctgcagagtgctggggagatggagacggaggcagcag
agccaagggagagaagaattccttttagggatgatacaaatattttaatg
tgatgatacaagcacagatctgtgaatataataaaagccactagatcaca
tgttttaagtgtctgaatagggatgggtatgtgaattatgtctcaagaaa
aaactgcttttcaaatgtaaggatgtcatattctgggcataacatacgga
aaaataatttcacaataacgcaatataaaaagtaacgatatgagtaatgt
attagaaagattaaaagaaagtaaggcatggaggccaccccatatagact
ccccaggacatatgaccagagtgatcatgtatttaaattggtgactcaga
tcccatgatcagtattggcatcagtgaggtaattgccactgttaccttac
catgtcacttgtcatggtagtttccctggagctgacaaaattatcctgaa
aaaagacaggtggcttggccctgctctacttgcc
gaattcttgcttaggagctgtggctcatgttgaactcctggttttcttgt
gttgtcctcccaagtgctggattatggttgtgcaccattgtacacaacag
ggtgtagagttaagaagtttgcatctctgcaatgatcctgaaatatactt
taatatgatagctagcttaagcgttttttatacctacacttggtccctag
actcattcctttttaaaatcaaaaaatattttaaactgggaacaaaaata
tggctgtgtttgcccaagtggtaaatacacaagaaatggttagaatttac
ctgaatcccacaagaagaaagaatttttcattttttaacaaaaatgggtt
cgttaaggaaccagctttttgaattcccccccctgaactggaaggggttt
aaacaaagggaaaccagccctgggggtggggcccctatttcctccgggtg
atttttttgaacttttaaaaaattgccccccttaataaatctgttttggc
cccccccttgccaatcttttttcttggaataaaaactcttaaaggaattt
ggagcccccaggggaacccctttttttttgtgtgtgcccaggccacaaaa
acaacctttttattacactttttgagagggccggtggccccacagaagag
atgatgtctctttgtgtgatacctcctacctctcttttgggtgcttctcc
tgtgcgctcttttagagaagagtagatgagggacttcccccacctagtaa
agaggagagaataacatcctgctagtaaggatatatgcatccactgtaat
gaggatggctgtaatcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24091334_24092260
seq2: B6Ng01-195L05.b_29_962

seq1  GAATTCCAGGTGTGGTGGCATGCTTGTACTTATCCTAAAGACGTATCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTGTGGTGGCATGCTTGTACTTATCCTAAAGACGTATCTTA  50

seq1  AGTTCAAGTCCAGATACACATACATACACACACATATAACTTAATATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAAGTCCAGATACACATACATACACACACATATAACTTAATATATA  100

seq1  TAACTTAGTTCTCAAAATACAGTGCATCTACAAAAATCTGGGCATGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAGTTCTCAAAATACAGTGCATCTACAAAAATCTGGGCATGCACA  150

seq1  GATTTTGAAAGTGTAAATCTGGACAAGAAGTGGGAAAACGCAAAGGGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGAAAGTGTAAATCTGGACAAGAAGTGGGAAAACGCAAAGGGATA  200

seq1  GGAAAAAAAACGAAAACAAAAGCAAAAGAAAGCACAATATATTTATACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAAAACGAAAACAAAAGCAAAAGAAAGCACAATATATTTATACAA  250

seq1  TGGGATAGAAACCAGCTATTAAAAAAGAAAGAAAGGCTGACAAGTACTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAGAAACCAGCTATTAAAAAAGAAAGAAAGGCTGACAAGTACTAC  300

seq1  CTATGGGAGAAAGTTGAAACTTTGGAGAAGGCTGGCGGGATCAGAACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGAGAAAGTTGAAACTTTGGAGAAGGCTGGCGGGATCAGAACAAG  350

seq1  ATACATTGTTTCACTGCACTTGGGAAAACCATGGGCGAGTCCATCCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGTTTCACTGCACTTGGGAAAACCATGGGCGAGTCCATCCCAGG  400

seq1  AGCTTGCCATTGGCTGCAGAGTGCTGGGGAGATGGAGACGGAGGCAGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCCATTGGCTGCAGAGTGCTGGGGAGATGGAGACGGAGGCAGCAG  450

seq1  AGCCAAGGGAGAGAAGAATTCCTTTTAGGGATGATACAAATATTTTAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGGGAGAGAAGAATTCCTTTTAGGGATGATACAAATATTTTAATG  500

seq1  TGATGATACAAGCACAGATCTGTGAATATAATAAAAGCCACTAGATCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATACAAGCACAGATCTGTGAATATAATAAAAGCCACTAGATCACA  550

seq1  TGTTTTAAGTGTCTGAATAGGGATGGGTATGTGAATTATGTCTCAAGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAGTGTCTGAATAGGGATGGGTATGTGAATTATGTCTCAAGAAA  600

seq1  AAACTGCTTTTCAAATGTAAGGATGTCATATTCTGGGCATAACATACGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTTTTCAAATGTAAGGATGTCATATTCTGGGCATAACATACGGA  650

seq1  AAAATAA-TTCACAATAACGCAATATAAAAAGTAACGATATGAGTAATGT  699
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTCACAATAACGCAATATAAAAAGTAACGATATGAGTAATGT  700

seq1  ATTAG-AAGATTAAAAGAAAGTAAGGCATGGAGGCCA-CCCATATAGACT  747
      ||||| ||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTAGAAAGATTAAAAGAAAGTAAGGCATGGAGGCCACCCCATATAGACT  750

seq1  -CCCAGGACATATGACCAGAGTGATCATGTA-TTAAATTGGTGACTCAGA  795
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCCCAGGACATATGACCAGAGTGATCATGTATTTAAATTGGTGACTCAGA  800

seq1  TCCCATGATCAGTATTGGCATCAGTGAGGTAATTGCCACTGTTA-CTTAA  844
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  TCCCATGATCAGTATTGGCATCAGTGAGGTAATTGCCACTGTTACCTTAC  850

seq1  CATGTCACTTGTCATGTTAAGTTTCCCTGGAGCTGACAAAGATTAGCCTG  894
      |||||||||||||||| | ||||||||||||||||||||| |||| ||||
seq2  CATGTCACTTGTCATGGT-AGTTTCCCTGGAGCTGACAAA-ATTATCCTG  898

seq1  --AAAAGACAGGTGGCTT-GCCCTGCTCTACCTGCC  927
        |||||||||||||||| |||||||||||| ||||
seq2  AAAAAAGACAGGTGGCTTGGCCCTGCTCTACTTGCC  934