BAC Information

Click to search

BAC

Clone NameB6Ng01-197B22
Chromosome13 (Build37)
Map Location 90,290,745 - 90,449,809
singlet/doubletdoublet
Overlap genenone
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940, Xrcc4, Tmem167, LOC100043170
Downstream geneLOC624190, EG435376, Rps23, Atg10, LOC100042959
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197B22.bB6Ng01-197B22.g
ACCGA019071GA019072
length1,1301,170
definitionB6Ng01-197B22.b B6Ng01-197B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,448,675 - 90,449,809)(90,290,745 - 90,291,916)
sequence
gaattctttcaataagatcaagggtaagtgatgtcctgcattttgccatg
gtattataaaatcagtgaagctgtatactcttaaaggacatatccagatt
taaaaaagcatattgccatgaaagttaaaaatattgaaccaaatatggtc
atgcaatactaatacagcagagtaaaggcacattaactggcaggacacac
gatcaaggaagaaaaatgtatagaagtgaatatatctggcttactctgtt
cctacttgaaatatacaatgtttaaatagtcatttcttacatatttgtta
tgtactcactgtaagcaagcaaatttcttgaaattcaggacacaagcaag
taaataataaacctgcctcatgacatttgtattctaacatctgaagacat
acagtaaattttaagcacactaagtaaatatgtattgcattcaagggtaa
tagttacaatagggggttataatagtttaaaggagaattgaaagttaaga
ctgagaaatagtgttttatattgctgagaaaatattggttagtctctggt
gtgggtctgagaacaaaaaactttcaatgaatcaagctaactcacttcaa
tgaacactttttgtaaaccaaccaattggcaccagtttctgtcatctcaa
attagtcagtcatgaaggaatggattctgaaagccacccttcacagatca
cttgccaatcaacaaacagtcagtctcactggaatgatcttatgtctaca
gatgaaagtcatgcttctttatattctgtaatcctgaaaactcagcctcc
gaagagatacgcaacatagcagaatgatctgctcttcattgtcattggat
gacgtaactcttccttaccatggtaagccaagcaatcgggctttatcttt
ttatctcattcctatgtggtagcaatcaagtaggaggcattccacttagg
agatgatatttgagcaaagaaataaagaaggccagaggatttatcagtta
tagatttgggaaagggttccaaagagggaataggtgggtccagagctaaa
ataggacaccgttggtaacatgtagctgttcttctttctcatcagcctaa
gaaacccattctttcacctcagaactcctg

gaattccaactattcaaaaatgtaatgtacacttaatagatgttagggct
caaccatagttaaaagcttgtgttttaataagacttgtccttagttagaa
atggaatcactgaatacacttctagaatttcatgtctgattatgaatgtt
tgagctttttaccaagttttgcacagttcatttccaaggatcctatagag
gagataggcaccatccagaaacagtttaagtaaaatgagaaaacatgaat
tctctgggacagagaagcatgtcccagcccttcatagcttaggatggaaa
gcatatgaagactgggacagcctcacctgggagcttggccctcactgcct
tccagctctcctccctcagaaggtttgttatccttgatactgagtttatt
gtagggtgtcccacctgcctatacacaaataaggagcttgaagaaatagg
tgggccaaagctgttgaccaatccttgcttcccccaaaatttacagcaga
tgcaatcccttacatttctatgtatgtaaggaaaaggagaacttgagttt
ctaggccttacaatattgaatttttccaggtagcatcaaattctggccat
aaaataataaaacaaataagccaaaagaataaaatgtattatgaaaacaa
tttctgttttttgcagattatcatgtctgctacctggtaaagcttttact
acagtctattattctgagtgttttttagctagtttaaaaaaaaaaagtga
ctatgtgtgtacttctactatactgattaaataccttaaaaaactaacat
gtcttccactgagatttttctctttttttcacaagaaaagatacaaacta
tgtggaaaagggcaatactaacaggttccctctgagtggagaattagtgc
aatgttgtgattcatggtttagcagcatcagctggaatgtcatctgcaac
atgattcagtgtgtattcatcacatgaactttaaacatgtctgaattcca
tgtctttttaatagttctaacaaaaactttcttaagactgaaaatggttg
tgatttttttaaagcacccccctttaacagaagcaaaatgtacaatgaga
gatgtttgtttgttattaaaatactgcaatgagcaacccaatgaatttac
tgtttaaggtctgaaatttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_90448675_90449809
seq2: B6Ng01-197B22.b_52_1181 (reverse)

seq1  CAGGAG-TCTGTGGGTGAAGGATGGGTTTCTTAGGCTTGATGAGGAAGAA  49
      |||||| |||| ||   ||| ||||||||||||||| ||||||| |||||
seq2  CAGGAGTTCTGAGGTGAAAGAATGGGTTTCTTAGGC-TGATGAGAAAGAA  49

seq1  GAACAGCTTACATGTTACCAACGGTGTTCCTATTTTAAGCTTCTGGA-CC  98
      ||||||| |||||||||||||||||| ||||||||| ||| |||||| ||
seq2  GAACAGC-TACATGTTACCAACGGTG-TCCTATTTT-AGC-TCTGGACCC  95

seq1  AACTATTCCCTCTTTTGGAAACCTTTTCCAAATCTATAACTTGATAAATC  148
      | |||||||||| ||||||| ||||| ||||||||||||| |||||||||
seq2  ACCTATTCCCTC-TTTGGAACCCTTTCCCAAATCTATAAC-TGATAAATC  143

seq1  CTCTGGCCTTCTTTATTTCTTTGCTCAAATATCATCTCCTAAGTGGAATG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCTTCTTTATTTCTTTGCTCAAATATCATCTCCTAAGTGGAATG  193

seq1  CCTCCTACTTGATTGCTACCACATAGGAATGAGATAAAAAGATAAAGCCC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTACTTGATTGCTACCACATAGGAATGAGATAAAAAGATAAAGCCC  243

seq1  GATTGCTTGGCTTACCATGGTAAGGAAGAGTTACGTCATCCAATGACAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTTGGCTTACCATGGTAAGGAAGAGTTACGTCATCCAATGACAAT  293

seq1  GAAGAGCAGATCATTCTGCTATGTTGCGTATCTCTTCGGAGGCCTGAGTT  348
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAAGAGCAGATCATTCTGCTATGTTGCGTATCTCTTCGGAGG-CTGAGTT  342

seq1  TTCAGGATTACAGAATAT-AAGAAGCATGACTTTCATCTGTAGACATAAG  397
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCAGGATTACAGAATATAAAGAAGCATGACTTTCATCTGTAGACATAAG  392

seq1  ATCATTCCAGTGAGACTGACTGTTTGTTGATTGGCAAGTGATCTGTGAAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCCAGTGAGACTGACTGTTTGTTGATTGGCAAGTGATCTGTGAAG  442

seq1  GGTGGCTTTCAGAATCCATTCCTTCATGACTGACTAATTTGAGATGACAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTTTCAGAATCCATTCCTTCATGACTGACTAATTTGAGATGACAG  492

seq1  AAACTGGTGCCAATTGGTTGGTTTACAAAAAGTGTTCATTGAAGTGAGTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTGCCAATTGGTTGGTTTACAAAAAGTGTTCATTGAAGTGAGTT  542

seq1  AGCTTGATTCATTGAAAGTTTTTTGTTCTCAGACCCACACCAGAGACTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGATTCATTGAAAGTTTTTTGTTCTCAGACCCACACCAGAGACTAA  592

seq1  CCAATATTTTCTCAGCAATATAAAACACTATTTCTCAGTCTTAACTTTCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATTTTCTCAGCAATATAAAACACTATTTCTCAGTCTTAACTTTCA  642

seq1  ATTCTCCTTTAAACTATTATAACCCCCTATTGTAACTATTACCCTTGAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCTTTAAACTATTATAACCCCCTATTGTAACTATTACCCTTGAAT  692

seq1  GCAATACATATTTACTTAGTGTGCTTAAAATTTACTGTATGTCTTCAGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATACATATTTACTTAGTGTGCTTAAAATTTACTGTATGTCTTCAGAT  742

seq1  GTTAGAATACAAATGTCATGAGGCAGGTTTATTATTTACTTGCTTGTGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAATACAAATGTCATGAGGCAGGTTTATTATTTACTTGCTTGTGTC  792

seq1  CTGAATTTCAAGAAATTTGCTTGCTTACAGTGAGTACATAACAAATATGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTCAAGAAATTTGCTTGCTTACAGTGAGTACATAACAAATATGT  842

seq1  AAGAAATGACTATTTAAACATTGTATATTTCAAGTAGGAACAGAGTAAGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGACTATTTAAACATTGTATATTTCAAGTAGGAACAGAGTAAGC  892

seq1  CAGATATATTCACTTCTATACATTTTTCTTCCTTGATCGTGTGTCCTGCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATATTCACTTCTATACATTTTTCTTCCTTGATCGTGTGTCCTGCC  942

seq1  AGTTAATGTGCCTTTACTCTGCTGTATTAGTATTGCATGACCATATTTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATGTGCCTTTACTCTGCTGTATTAGTATTGCATGACCATATTTGG  992

seq1  TTCAATATTTTTAACTTTCATGGCAATATGCTTTTTTAAATCTGGATATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATTTTTAACTTTCATGGCAATATGCTTTTTTAAATCTGGATATG  1042

seq1  TCCTTTAAGAGTATACAGCTTCACTGATTTTATAATACCATGGCAAAATG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAGAGTATACAGCTTCACTGATTTTATAATACCATGGCAAAATG  1092

seq1  CAGGACATCACTTACCCTTGATCTTATTGAAAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATCACTTACCCTTGATCTTATTGAAAGAATTC  1130


seq1: chr13_90290745_90291916
seq2: B6Ng01-197B22.g_65_1234

seq1  GAATTCCAACTATTCAAAAATGTAATGTACACTTAATAGATGTTAGGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTATTCAAAAATGTAATGTACACTTAATAGATGTTAGGGCT  50

seq1  CAACCATAGTTAAAAGCTTGTGTTTTAATAAGACTTGTCCTTAGTTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATAGTTAAAAGCTTGTGTTTTAATAAGACTTGTCCTTAGTTAGAA  100

seq1  ATGGAATCACTGAATACACTTCTAGAATTTCATGTCTGATTATGAATGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATCACTGAATACACTTCTAGAATTTCATGTCTGATTATGAATGTT  150

seq1  TGAGCTTTTTACCAAGTTTTGCACAGTTCATTTCCAAGGATCCTATAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTTTTTACCAAGTTTTGCACAGTTCATTTCCAAGGATCCTATAGAG  200

seq1  GAGATAGGCACCATCCAGAAACAGTTTAAGTAAAATGAGAAAACATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAGGCACCATCCAGAAACAGTTTAAGTAAAATGAGAAAACATGAAT  250

seq1  TCTCTGGGACAGAGAAGCATGTCCCAGCCCTTCATAGCTTAGGATGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGGACAGAGAAGCATGTCCCAGCCCTTCATAGCTTAGGATGGAAA  300

seq1  GCATATGAAGACTGGGACAGCCTCACCTGGGAGCTTGGCCCTCACTGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGAAGACTGGGACAGCCTCACCTGGGAGCTTGGCCCTCACTGCCT  350

seq1  TCCAGCTCTCCTCCCTCAGAAGGTTTGTTATCCTTGATACTGAGTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCTCTCCTCCCTCAGAAGGTTTGTTATCCTTGATACTGAGTTTATT  400

seq1  GTAGGGTGTCCCACCTGCCTATACACAAATAAGGAGCTTGAAGAAATAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTGTCCCACCTGCCTATACACAAATAAGGAGCTTGAAGAAATAGG  450

seq1  TGGGCCAAAGCTGTTGACCAATCCTTGCTTCCCCCAAAATTTACAGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAAAGCTGTTGACCAATCCTTGCTTCCCCCAAAATTTACAGCAGA  500

seq1  TGCAATCCCTTACATTTCTATGTATGTAAGGAAAAGGAGAACTTGAGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCCCTTACATTTCTATGTATGTAAGGAAAAGGAGAACTTGAGTTT  550

seq1  CTAGGCCTTACAATATTGAATTTTTCCAGGTAGCATCAAATTCTGGCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCTTACAATATTGAATTTTTCCAGGTAGCATCAAATTCTGGCCAT  600

seq1  AAAATAATAAAACAAATAAGCCAAAAGAATAAAATGTATTATGAAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATAAAACAAATAAGCCAAAAGAATAAAATGTATTATGAAAACAA  650

seq1  TTTCTGTTTTTTGCAGATTATCATGTCTGCTACCTGGTAAAGCTTTTACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTTTTTGCAGATTATCATGTCTGCTACCTGGTAAAGCTTTTACT  700

seq1  ACAGTCTATTATTCTGAGTGTTTTTTAGCTAGTTT-AAAAAAAAAAGTGA  749
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ACAGTCTATTATTCTGAGTGTTTTTTAGCTAGTTTAAAAAAAAAAAGTGA  750

seq1  CTATGTGTGTACTTCTACTATACTGATTAAATACCTTAAAAAACTAACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGTGTACTTCTACTATACTGATTAAATACCTTAAAAAACTAACAT  800

seq1  GTCTTCCACTGAGATTTTTCTCTTTTTTTCACAAGAAAAGATACAAACTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCACTGAGATTTTTCTCTTTTTTTCACAAGAAAAGATACAAACTA  850

seq1  TGTGGAAAAGGGCAATACTAACAGGTTCCCTCTGAGGTGGAGAATTAGTG  899
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTGGAAAAGGGCAATACTAACAGGTTCCCTCTGA-GTGGAGAATTAGTG  899

seq1  CAATGTTGTGATTCATGGTTTAGCAGCATCAGCTGGAATGTCATCTGCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTGTGATTCATGGTTTAGCAGCATCAGCTGGAATGTCATCTGCAA  949

seq1  CATGATTCAGTGTGTATTCATCACATGAACTTAAAACATGTCTGAATTCC  999
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATGATTCAGTGTGTATTCATCACATGAACTTTAAACATGTCTGAATTCC  999

seq1  ATGTCTTTT--ATAGTTCT-ACAAAAACTTTCTTAAGACTGAAAATGGTG  1046
      |||||||||  |||||||| ||||||||||||||||||||||||||||| 
seq2  ATGTCTTTTTAATAGTTCTAACAAAAACTTTCTTAAGACTGAAAATGGTT  1049

seq1  GTGA-TTTTTTAAAGCA-CCCCCTTTAACAGGAAAGCAAAATGTACAAAT  1094
      |||| |||||||||||| |||||||||||||  ||||||||||||| |||
seq2  GTGATTTTTTTAAAGCACCCCCCTTTAACAG--AAGCAAAATGTAC-AAT  1096

seq1  GAGAGGAATG-TTGTTTGTTA-TAAAATAAATTTGAAAATTGAGCAACCA  1142
      |||||  ||| |||||||||| |||||||    || ||  ||||||||| 
seq2  GAGAG--ATGTTTGTTTGTTATTAAAATA---CTGCAA--TGAGCAACCC  1139

seq1  AATGAATTTACTGTTAAAAGTCTG-AATTTC  1172
      ||||||||||||||| || ||||| ||||||
seq2  AATGAATTTACTGTTTAAGGTCTGAAATTTC  1170


| Home | SequenceCutter | Blast | Download |