BAC Information

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BAC

Clone NameB6Ng01-198F01
Chromosome13 (Build37)
Map Location 103,346,342 - 103,515,603
singlet/doubletdoublet
Overlap geneCd180
Upstream genePik3r1
Downstream geneMast4, EG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198F01.bB6Ng01-198F01.g
ACCGA019943GA019944
length632202
definitionB6Ng01-198F01.b B6Ng01-198F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,346,342 - 103,346,973)(103,515,402 - 103,515,603)
sequence
gaattcagccctacacatcccctacaaatagttcagtaaatccaggttca
tcctgtgatatatagacattgatatagcctttgccttagaaatgggccta
tacatatcggccaactgcagactcctcaaacacctatgacccatctgacc
catctgacgttctcatctcctgcttcttctggacttcacagtcccgggca
acatgactgctgtatctggggcaattttcagagagccaataaaaacgcat
acgctttcaagacatagcgccacctctgaatccaaaactcgtgtgactgt
tgaggagcaaagtgatctcttttctcttttcctagcataaacacacatgg
cagagggacagtgccaaaggtcacagtgagatgagtttagaaactccttc
caaggacactgcacttcaaagaaaccacacagcagtgttctggtcacatg
aaccccaagaatgtgttggctatttttaaatcttcaaaatcagcccactt
tttccacatgcatcacccctttagaatcttctttacccaaactcccctgc
ttgaagtatcacaagctcacatggacttaatggctacagaagtctttacc
acttttccatggaaattggggggtgagggggg

tttatcttgtccaagaataagatctttatgctatcagaaacctatactta
gtagggttcccccttggtgagggtgagcttacctggaaatgacaatgctt
caagcaagagaaaataacatctatgaaatgatgctgcccaaggtggctct
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgt
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_103346342_103346973
seq2: B6Ng01-198F01.b_49_680

seq1  GAATTCAGCCCTACACATCCCCTACAAATAGTTCAGTAAATCCAGGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCCTACACATCCCCTACAAATAGTTCAGTAAATCCAGGTTCA  50

seq1  TCCTGTGATATATAGACATTGATATAGCCTTTGCCTTAGAAATGGGCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGATATATAGACATTGATATAGCCTTTGCCTTAGAAATGGGCCTA  100

seq1  TACATATCGGCCAACTGCAGACTCCTCAAACACCTATGACCCATCTGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATCGGCCAACTGCAGACTCCTCAAACACCTATGACCCATCTGACC  150

seq1  CATCTGACGTTCTCATCTCCTGCTTCTTCTGGACTTCACAGTCCCGGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGACGTTCTCATCTCCTGCTTCTTCTGGACTTCACAGTCCCGGGCA  200

seq1  ACATGACTGCTGTATCTGGGGCAATTTTCAGAGAGCCAATAAAAACGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACTGCTGTATCTGGGGCAATTTTCAGAGAGCCAATAAAAACGCAT  250

seq1  ACGCTTTCAAGACATAGCGCCACCTCTGAATCCAAAACTCGTGTGACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTTTCAAGACATAGCGCCACCTCTGAATCCAAAACTCGTGTGACTGT  300

seq1  TGAGGAGCAAAGTGATCTCTTTTCTCTTTTCCTAGCATAAACACACATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGCAAAGTGATCTCTTTTCTCTTTTCCTAGCATAAACACACATGG  350

seq1  CAGAGGGACAGTGCCAAAGGTCACAGTGAGATGAGTTTAGAAACTCCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGGACAGTGCCAAAGGTCACAGTGAGATGAGTTTAGAAACTCCTTC  400

seq1  CAAGGACACTGCACTTCAAAGAAACCACACAGCAGTGTTCTGGTCACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGACACTGCACTTCAAAGAAACCACACAGCAGTGTTCTGGTCACATG  450

seq1  AACCCCAAGAATGTGTTGGCTATTTTTAAATCTTCAAAATCAGCCCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAGAATGTGTTGGCTATTTTTAAATCTTCAAAATCAGCCCACTT  500

seq1  TTTCCACATGCATCACCCCTTTAGAATCTTCTTTACCCAAACTCCCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACATGCATCACCCCTTTAGAATCTTCTTTACCCAAACTCCCCTGC  550

seq1  TTGAAGTATCACAAGCTCACATGGACTTAATGGCTACAGAAGTCTTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTATCACAAGCTCACATGGACTTAATGGCTACAGAAGTCTTTACC  600

seq1  ACTTTTCCATGGAAATTGGGGGGTGAGGGGGG  632
      ||||||||||||||||||||||||||||||||
seq2  ACTTTTCCATGGAAATTGGGGGGTGAGGGGGG  632


seq1: chr13_103515402_103515603
seq2: B6Ng01-198F01.g_73_274 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGCACACACACACACACACACACACACACACACACACACACACACAC  50

seq1  ACAGAGCCACCTTGGGCAGCATCATTTCATAGATGTTATTTTCTCTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCCACCTTGGGCAGCATCATTTCATAGATGTTATTTTCTCTTGCT  100

seq1  TGAAGCATTGTCATTTCCAGGTAAGCTCACCCTCACCAAGGGGGAACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCATTGTCATTTCCAGGTAAGCTCACCCTCACCAAGGGGGAACCCT  150

seq1  ACTAAGTATAGGTTTCTGATAGCATAAAGATCTTATTCTTGGACAAGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTATAGGTTTCTGATAGCATAAAGATCTTATTCTTGGACAAGATA  200

seq1  AA  202
      ||
seq2  AA  202


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