BAC Information

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BAC

Clone NameB6Ng01-198H02
Chromosome13 (Build37)
Map Location 107,188,156 - 107,189,261
singlet/doubletsinglet
Overlap genenone
Upstream geneHtr1a, EG668025, Olfr717-ps1
Downstream geneLOC631097, EG620949, Ipo11, Dimt1, Kif2a, LOC100040322, LOC100040350, LOC100040366
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198H02.bB6Ng01-198H02.g
ACCGA020040GA020041
length1,126499
definitionB6Ng01-198H02.b B6Ng01-198H02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctagtactgcacgttgaggaagcagccacagcaagaaggacaga
agacagaaaccactaggcagcagaacagttttaattcttttaatgaaaat
ttggagacacagtgaatacctgcaatatgttgtgataaatgtgtaaactt
tgccaaggataattttttgttattttgtgtttgtatacagaaaaaaaatg
actgttatgtaatgacagtttttaaatgaaaacaaagagaggtgaagtct
gctggaagcagtagagttaaattaattatataatattaaaccactaataa
aagtgctgtatctgctcaacaaactcacagaaattggtggaaaatttcag
agaaagatatttacagaatttaacactatcaaaaaagcaactatttaggg
taaggctatgggaaggatatcatgaaaggtcaggagccagagaagcacta
cacacttacataatgatagaacatactcatgacttgaaaaaaaaaggaaa
acatagaaaatccatttaactctctgaccatttagttattcaaaagtttt
aaaaggaaacaactgcatagatattgttaaaagtttgaaaaaattaaaaa
tcaaagaagtagctcaaaaacagcaacataagtttaacaaatagataaat
taaataaacaataagttaatcagaaaaaaatatcaagttctgcttaagtg
ttcccctaaatgttatcgtaagatttaatatgaatattaacaggtcttaa
agataaaatttctatatagaagaaatgtgtaattacatatgtaatgttaa
ttaaagaaaatcatgatggaaaacaaagaacaaggcaagcattttgaatt
aggaagatgacagggctcagtgtaggaagatacctcagaaacctgggtca
agtcccagctctatcaaccactgtttcaatttcatgtaggaaattagatc
attaaacttcatagaatccaattttttaattatttaaattaggatatatt
attatagagagaactaacgccaagttaccaaaataatatggcctaacaag
tctcgcctcaaccagctggagttaccaatgaaccactgagcttgtataag
gattgcttgggctttcatgagaaaag

acctatgttaatcatgtcaagcatgcattccttcctctattctcctactg
agtgggccttaactacagttggaaagttctaggttatcctcaacgtagag
gtgcttctcttccttggtagctcacatggaaactttggataccatggtag
ctagtcctcagggaggaggctctcaggtcagttctagcttgattctccca
agtcccttgtcctaagtgtatggtgtcttcagatatagggcctttcaagt
tctgggaggcaaccaaggaaaatggaaaagcctgtattgttttgaaaatg
tcttagacttttctaaccaacatgctgaagggggtgtttcccatgtcttg
tcctgagggtttgtgagacagtctatggctcttgtagggagcatgatcac
cccaaatggcatatcatatatacatatatagacatatgtatatatgtgta
tatatgtataggtgtatatatgtatatatgcaatgccatttggggtgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_107188156_107189261
seq2: B6Ng01-198H02.b_44_1169

seq1  GAATTCCTAGTACTGCACGTTGAGGAAGCAGCCACAGCAAGAAGGACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGTACTGCACGTTGAGGAAGCAGCCACAGCAAGAAGGACAGA  50

seq1  AGACAGAAACCACTAGGCAGCAGAACAGTTTTAATTCTTTTAATGAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAACCACTAGGCAGCAGAACAGTTTTAATTCTTTTAATGAAAAT  100

seq1  TTGGAGACACAGTGAATACCTGCAATATGTTGTGATAAATGTGTAAACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACACAGTGAATACCTGCAATATGTTGTGATAAATGTGTAAACTT  150

seq1  TGCCAAGGATAATTTTTTGTTATTTTGTGTTTGTATACAGAAAAAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGATAATTTTTTGTTATTTTGTGTTTGTATACAGAAAAAAAATG  200

seq1  ACTGTTATGTAATGACAGTTTTTAAATGAAAACAAAGAGAGGTGAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATGTAATGACAGTTTTTAAATGAAAACAAAGAGAGGTGAAGTCT  250

seq1  GCTGGAAGCAGTAGAGTTAAATTAATTATATAATATTAAACCACTAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAGCAGTAGAGTTAAATTAATTATATAATATTAAACCACTAATAA  300

seq1  AAGTGCTGTATCTGCTCAACAAACTCACAGAAATTGGTGGAAAATTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGTATCTGCTCAACAAACTCACAGAAATTGGTGGAAAATTTCAG  350

seq1  AGAAAGATATTTACAGAATTTAACACTATCAAAAAAGCAACTATTTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATATTTACAGAATTTAACACTATCAAAAAAGCAACTATTTAGGG  400

seq1  TAAGGCTATGGGAAGGATATCATGAAAGGTCAGGAGCCAGAGAAGCACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTATGGGAAGGATATCATGAAAGGTCAGGAGCCAGAGAAGCACTA  450

seq1  CACACTTACATAATGATAGAACATACTCATGACTTGAAAAAAAAAGGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTACATAATGATAGAACATACTCATGACTTGAAAAAAAAAGGAAA  500

seq1  ACATAGAAAATCCATTTAACTCTCTGACCATTTAGTTATTCAAAAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGAAAATCCATTTAACTCTCTGACCATTTAGTTATTCAAAAGTTTT  550

seq1  AAAAGGAAACAACTGCATAGATATTGTTAAAAGTTTGAAAAAATTAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAAACAACTGCATAGATATTGTTAAAAGTTTGAAAAAATTAAAAA  600

seq1  TCAAAGAAGTAGCTCAAAAACAGCAACATAAGTTTAACAAATAGATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAGTAGCTCAAAAACAGCAACATAAGTTTAACAAATAGATAAAT  650

seq1  TAAATAAACAATAAGTTAATCAGAAAAAAATATCAAGTTCTGCTTAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAACAATAAGTTAATCAGAAAAAAATATCAAGTTCTGCTTAAGTG  700

seq1  TTCCCCTAAATGTTATCGTAAGATTTAATATGAATATTAACAGGTCTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTAAATGTTATCGTAAGATTTAATATGAATATTAACAGGTCTTAA  750

seq1  AGATAAAATTTCTATATAGAAGAAATGTGTAATTACATATGTAATGTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAATTTCTATATAGAAGAAATGTGTAATTACATATGTAATGTTAA  800

seq1  TTAAAGAAAATCATGATGGAAAACAAAGAACAAGGCAAGCA-TTTGAATT  849
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTAAAGAAAATCATGATGGAAAACAAAGAACAAGGCAAGCATTTTGAATT  850

seq1  AGGAAGATGACAGGGCTCAGTGTAGGAAGATACCTCAGAAACCTGGGTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATGACAGGGCTCAGTGTAGGAAGATACCTCAGAAACCTGGGTCA  900

seq1  AGTCCCAGCTCTATCAACCACTGTTTCAA-TTCATGTAGGAAATTAGATC  948
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGTCCCAGCTCTATCAACCACTGTTTCAATTTCATGTAGGAAATTAGATC  950

seq1  ATTAAACTTCATAGAATCC-ATTTTTTAATTA-TTAAATTAGG--ATAAT  994
      ||||||||||||||||||| |||||||||||| ||||||||||  ||| |
seq2  ATTAAACTTCATAGAATCCAATTTTTTAATTATTTAAATTAGGATATATT  1000

seq1  ATTATAGAGAGAACTAACG-CAAG-TACC-AAATAATAT-GCCTAAC-AG  1039
      ||||||||||||||||||| |||| |||| ||||||||| ||||||| ||
seq2  ATTATAGAGAGAACTAACGCCAAGTTACCAAAATAATATGGCCTAACAAG  1050

seq1  TCTCGCCTC-ACCAGCTGGAG-TACC-ATGAA-CACTGAGCTGTTATAAG  1085
      ||||||||| ||||||||||| |||| ||||| |||||||||  ||||||
seq2  TCTCGCCTCAACCAGCTGGAGTTACCAATGAACCACTGAGCTTGTATAAG  1100

seq1  --ATGCT--GGC-TTCATGAGAAAAG  1106
         ||||  ||| |||||||||||||
seq2  GATTGCTTGGGCTTTCATGAGAAAAG  1126


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