BAC Information

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BAC

Clone NameB6Ng01-199C17
Chromosome13 (Build37)
Map Location 22,859,091 - 22,860,224
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735
Downstream geneV1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199C17.bB6Ng01-199C17.g
ACCGA020573GA020574
length1,2151,134
definitionB6Ng01-199C17.b B6Ng01-199C17.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgaggggataagggatttggttctacaggaactaatgtggcct
acatatctttagatttggataatcgtcctactttacaattataaatagaa
ggaaaaacctttcaaggtatagtggatataggagcggataaaagcattgc
atccagtaactggtggcccgcttcttggcctgttaatcaatcatcacata
gcttacaaggattaggatatgaggctaccccaactataagtgcaacatcc
ttacaatggaaagataaagaaggaaggaaagggccttttcaaccttatgt
gatccctttacctgtaaatttatggggaagagatgtgttgtcagccatga
attttatgactaatgattattctcagaaaagcaaggaaatgatgaaagga
atgggatatatacatggactaggtcttggaaaaaatttacatggtagaat
ttcaccagttacagccacagaaaaagcagataagaaagggctgggttttt
ttctaggggccgctgaggagcctttgcccactccgtggcatacagaggac
gcggtgtgggtgcctcagtggcctttaccctctgagaagttaaaagcagc
taaagaattaggataagaacaattagacctagggcatgtagaacccaggc
aatcaccctagaatatccctatttttgttgtaaagaagaaatcaggtaaa
tggagattgttacatgacctacgagccattaatgcacacatgcaagttat
gggtcctgtacaaagaggactccccctactctcagctctacctaaggatt
ggagaattatagtagtggatattgaggattgtttcttttccatttcacta
aataagaaagataaacctagatttgcatttaccctgccttctattagtca
tatggagcctgataaaaggtatcaatgggcgggtattaacccaaggaatg
gcaaatagccctaccatgtgtcagttatatgtaggaaaactttgcacagt
agagatggttttccctccttaaaatatgtcattatatggatgatatttga
tttgtggactggaagaagaaagtatacaacaggctatagcctgccttaat
gaattttaaaaatatggcttgatcatggcaccagaaagtcaggcagtcta
aggtagtcattttggggagcacatatacttaacgggtgttaacctcctca
aaaatattgacgtga
gaattcagttattagatgccaaaatgtaacagtcacagaatttaaatgcc
ctggatcacttcattggcattatatttgtgaaaattctttgcagttataa
agactaaatatatgaaataaattagataacaaatacacagtacagtttta
ttttatactcaactatggttactatgttgatttaaaaaatgtacatttgt
ctcattcaaaataaatcattgagtgtgaccaaaggtaagcaagtctgctt
tgcagctgccctttgttactgcccaggtgctctccatagctccgtgcagc
tctgtagcacaaaggagttctggaaggatctgactctacataaatttaaa
tgaaaattcactgcttatgtacttaaattggatccatacagtaagaacct
gacaagtttctaagaatctgatggacacattctgaaacattggtataatt
attgaccatgaacttttttaatcattagaggcaagtttttatcttatttt
taaaaattttctgttatatctgacaggaaacactgggagatgcctggatc
tactttataatgatgaacactatttataatttgcttcgtggcacagtata
tacacgacaatttgttactggtgtgaactatattgtgctacagattatta
aatagcttttttctaattatattaatgtatctgtgtgagtgtatgtcaca
tttgtacaggtgtccttacagccctgaggagagcatttgattactaggaa
ttagagctacaagctgtcatgtatcctatgatatgggtgtagggtaagga
agcagagtcctctgcaagacaagtaagtctcttcatcatttccccacttc
cttgtctgatgcaatgtgagttgtccataggtaacatccactacttctct
tagtctcacagctcttttgttagagcttttttttctagtgtctgtcacaa
aggaccagacacagacaaaacaaacaccttctaaatcaatcttatttaat
ttgactcaaaagaagtgatgtaaaacacgagagaggtgaagaatgatgtg
attaatctgagtgattgaagagtttgttcacatttagaatagaacagggc
ttggagagaatgaactcagtgaatatagcacctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22859091_22860224
seq2: B6Ng01-199C17.g_64_1197 (reverse)

seq1  CAGGTGCTTTTACTCACTGAG-TCA-TCTCTCCAGCCCCCTGTCTATTCC  48
      ||||||| | || |||||||| ||| ||||||||  |||   ||||||| 
seq2  CAGGTGC-TATATTCACTGAGTTCATTCTCTCCAAGCCCTGTTCTATTCT  49

seq1  TAATGTTGAACAAACTCTTC-ATCACTCAGATTAATCACATCTTTCTTCA  97
       |||| |||||||||||||| ||||||||||||||||||||| |||||||
seq2  AAATG-TGAACAAACTCTTCAATCACTCAGATTAATCACATCATTCTTCA  98

seq1  CCTCTTCTCCGTGTTTTTACATCACTTCTTTTGAGTCAAATTAAAT-AGA  146
      |||| ||| |||| |||||||||||||||||||||||||||||||| |||
seq2  CCTC-TCT-CGTG-TTTTACATCACTTCTTTTGAGTCAAATTAAATAAGA  145

seq1  TTGATTTAGAAGGTGTTTGTTTTGTCTGTGTCTGGTCCTTTGTGACAGAC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTAGAAGGTGTTTGTTTTGTCTGTGTCTGGTCCTTTGTGACAGAC  195

seq1  ACTAG-AAAAAAAGCTCTAACAAAAGAGCTGTGAGACTAAGAGAAGTAGT  245
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAAAAAAAGCTCTAACAAAAGAGCTGTGAGACTAAGAGAAGTAGT  245

seq1  GGATGTTACCTATGGACAACTCACATTGCATCAGACAAGGAAGTGGGGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTACCTATGGACAACTCACATTGCATCAGACAAGGAAGTGGGGAA  295

seq1  ATGATGAAGAGACTTACTTGTCTTGCAGAGGACTCTGCTTCCTTACCCTA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAAGAGACTTACTTGTCTTGCAGAGGACTCTGCTTCCTTACCCTA  345

seq1  CACCCATATCATAGGATACATGACAGCTTGTAGCTCTAATTCCTAGTAAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATATCATAGGATACATGACAGCTTGTAGCTCTAATTCCTAGTAAT  395

seq1  CAAATGCTCTCCTCAGGGCTGTAAGGACACCTGTACAAATGTGACATACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTCTCCTCAGGGCTGTAAGGACACCTGTACAAATGTGACATACA  445

seq1  CTCACACAGATACATTAATATAATTAGAAAAAAGCTATTTAATAATCTGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACAGATACATTAATATAATTAGAAAAAAGCTATTTAATAATCTGT  495

seq1  AGCACAATATAGTTCACACCAGTAACAAATTGTCGTGTATATACTGTGCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAATATAGTTCACACCAGTAACAAATTGTCGTGTATATACTGTGCC  545

seq1  ACGAAGCAAATTATAAATAGTGTTCATCATTATAAAGTAGATCCAGGCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAGCAAATTATAAATAGTGTTCATCATTATAAAGTAGATCCAGGCAT  595

seq1  CTCCCAGTGTTTCCTGTCAGATATAACAGAAAATTTTTAAAAATAAGATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTGTTTCCTGTCAGATATAACAGAAAATTTTTAAAAATAAGATA  645

seq1  AAAACTTGCCTCTAATGATTAAAAAAGTTCATGGTCAATAATTATACCAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGCCTCTAATGATTAAAAAAGTTCATGGTCAATAATTATACCAA  695

seq1  TGTTTCAGAATGTGTCCATCAGATTCTTAGAAACTTGTCAGGTTCTTACT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGAATGTGTCCATCAGATTCTTAGAAACTTGTCAGGTTCTTACT  745

seq1  GTATGGATCCAATTTAAGTACATAAGCAGTGAATTTTCATTTAAATTTAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGATCCAATTTAAGTACATAAGCAGTGAATTTTCATTTAAATTTAT  795

seq1  GTAGAGTCAGATCCTTCCAGAACTCCTTTGTGCTACAGAGCTGCACGGAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGTCAGATCCTTCCAGAACTCCTTTGTGCTACAGAGCTGCACGGAG  845

seq1  CTATGGAGAGCACCTGGGCAGTAACAAAGGGCAGCTGCAAAGCAGACTTG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAGAGCACCTGGGCAGTAACAAAGGGCAGCTGCAAAGCAGACTTG  895

seq1  CTTACCTTTGGTCACACTCAATGATTTATTTTGAATGAGACAAATGTACA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTTTGGTCACACTCAATGATTTATTTTGAATGAGACAAATGTACA  945

seq1  TTTTTTAAATCAACATAGTAACCATAGTTGAGTATAAAATAAAACTGTAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATCAACATAGTAACCATAGTTGAGTATAAAATAAAACTGTAC  995

seq1  TGTGTATTTGTTATCTAATTTATTTCATATATTTAGTCTTTATAACTGCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTTGTTATCTAATTTATTTCATATATTTAGTCTTTATAACTGCA  1045

seq1  AAGAATTTTCACAAATATAATGCCAATGAAGTGATCCAGGGCATTTAAAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTTCACAAATATAATGCCAATGAAGTGATCCAGGGCATTTAAAT  1095

seq1  TCTGTGACTGTTACATTTTGGCATCTAATAACTGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACTGTTACATTTTGGCATCTAATAACTGAATTC  1134