BAC Information

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BAC

Clone NameB6Ng01-199I10
Chromosome1 (Build37)13 (Build37)
Map Location 17,851,084 - 17,852,11915,331,103 - 15,331,637
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneJph1, Gdap1, LOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1
Downstream geneLOC665564, LOC100040126, Crisp4, EG574082, EG654460, Defb17, LOC383499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-199I10.bB6Ng01-199I10.g
ACCGA020837GA020838
length1,0441,034
definitionB6Ng01-199I10.b B6Ng01-199I10.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(17,851,084 - 17,852,119)(15,331,103 - 15,331,637)
sequence
gaattcctgatctccccaataattttaatatgaagggttgtcacatttgt
caaatgcttttgctgcatctaaggagatattcatgtgatttttttccttt
gagtttgtttatatggtgtattatgacaatgagtttttgtatattgaacc
atccttgcatcactgggaagaaacctacttgattatcatgaatgatgatt
ttgatgtgtacttggattcagtttgcaagaattttattgagtatttttgc
attaatattcataagcaaaaatggtctgaagttctcctttttggttgggc
ccttgtggggtttaggtatcagagtacttgtggcttcatagaatgaatta
ggtagtgttccttctgtatgtataaacatatactcaagcatgcaatttac
ctttcactaaaattctctctatcatatatatatatatatatatataagcc
cccactcttgaagtaactgaatttgagtatgggtgtaaagatgctgctgt
gagctatagcagagctagaagtaagggtttacttctccgttgtgctgtgc
gcatcttaagagttcctctgcacagaaggcaactgggcaattgacatcac
agtctgaagacctcctaggactctgtgacatgcaggggaactggactaac
agactgaaagcctccctggagttctgctgcacacaggtaaacagaaacca
cagtctatggccacccccagagaacagtttcatgtagaacaatagcttga
gtcctcctctgatgacccaagagtctgaaggcctcccaggagatcttcta
cagccaggggtatggatcagtagctttcttcacttcttcttagactccca
actggaaaggcctacaggaggtcttactacatcccagtagcataggccta
ccagtgacctgaaacaaccaaagggacaatgggggaagattccaaccaga
ctcacgcagactatcaaaacaccagtgataaccagatgagttggaggcaa
ccactataccgttaggcaaaaggaaagcatatacacttcagcat

gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcatacattaaact
attcctgcatcccttgaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggagttttgc
atcgatattcataagagaaattggtctgaagttctctatctttattggat
ctttctgtggtttaggtatcagagtaatagtggtttcataaaatgagtaa
tagagtaccttctacttctattttgtgaaataatttgtgcagaactcgaa
ttagatcttctttgaaggtctgatagaactctgcactaaacccgtccggt
cctgggctttttttggctgggagactattaataactgcttctattcttta
ggggatataggactgtttagatgttcaacttgatcctgattcaactttgg
tacctggtatctgtccagaaatttgtccatttcgtccaggttttccagtt
ttgttgagtatagccttttgtagaaggatctgatggtgctttggatttct
tcaggatttgttgttatgtctcccttttcagttctgattttattaattag
gattttgtccctgtgccctctagtgagtctagctaagggtttatctatct
tgtttgattttctcaaagaaccaactcctcgtttggttaattctttgaat
agttcttcttgttccactttggtgatttcaccccctgagtttgattattt
cctgtagtctactcctcttgggtgaatttgcttccctttttttatagagc
ttttagatgttgttgtcaagctgctagtatgtgcctctcttaccgttttc
tttctgggaggcactcagaagcttatgagtttcccctcttagaaatgctt
tccattgggtcccataagttttggggttacgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_17851084_17852119
seq2: B6Ng01-199I10.b_34_1077

seq1  GAATTCCTGATCTCCCCAATAATTTTAATATGAAGGGTTGTCACATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTCCCCAATAATTTTAATATGAAGGGTTGTCACATTTGT  50

seq1  CAAATGCTTTTGCTGCATCTAAGGAGATATTCATGTGATTTTTTTCCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTTTTGCTGCATCTAAGGAGATATTCATGTGATTTTTTTCCTTT  100

seq1  GAGTTTGTTTATATGGTGTATTATGACAATGAGTTTTTGTATATTGAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTTTATATGGTGTATTATGACAATGAGTTTTTGTATATTGAACC  150

seq1  ATCCTTGCATCACTGGGAAGAAACCTACTTGATTATCATGAATGATGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTGCATCACTGGGAAGAAACCTACTTGATTATCATGAATGATGATT  200

seq1  TTGATGTGTACTTGGATTCAGTTTGCAAGAATTTTATTGAGTATTTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGTACTTGGATTCAGTTTGCAAGAATTTTATTGAGTATTTTTGC  250

seq1  ATTAATATTCATAAGCAAAAATGGTCTGAAGTTCTCCTTTTTGGTTGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATATTCATAAGCAAAAATGGTCTGAAGTTCTCCTTTTTGGTTGGGC  300

seq1  CCTTGTGGGGTTTAGGTATCAGAGTACTTGTGGCTTCATAGAATGAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTGGGGTTTAGGTATCAGAGTACTTGTGGCTTCATAGAATGAATTA  350

seq1  GGTAGTGTTCCTTCTGTATGTATAAACATATACTCAAGCATGCAATTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTGTTCCTTCTGTATGTATAAACATATACTCAAGCATGCAATTTAC  400

seq1  CTTTCACTAAAATTCTCTCTATCATATATATATATATATATATATAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACTAAAATTCTCTCTATCATATATATATATATATATATATAAGCC  450

seq1  CCCACTCTTGAAGTAACTGAATTTGAGTATGGGTGTAAAGATGCTGCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTTGAAGTAACTGAATTTGAGTATGGGTGTAAAGATGCTGCTGT  500

seq1  GAGCTATAGCAGAGCTAGAAGTAAGGGTTTACTTCTCCGTTGTGCTGTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATAGCAGAGCTAGAAGTAAGGGTTTACTTCTCCGTTGTGCTGTGC  550

seq1  GCATCTTAAGAGTTCCTCTGCACAGAAGGCAACTGGGCAATTGACATCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTAAGAGTTCCTCTGCACAGAAGGCAACTGGGCAATTGACATCAC  600

seq1  AGTCTGAAGACCTCCTAGGACTCTGTGACATGCAGGGGAACTGGACTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGAAGACCTCCTAGGACTCTGTGACATGCAGGGGAACTGGACTAAC  650

seq1  AGACTGAAAGCCTCCCTGGAGTTCTGCTGCACACAGGTAAACAGAAACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGAAAGCCTCCCTGGAGTTCTGCTGCACACAGGTAAACAGAAACCA  700

seq1  CAGTCTATGGCCACCCCCAGAGAACAGTTTCATGTAGAACAATAGCTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTATGGCCACCCCCAGAGAACAGTTTCATGTAGAACAATAGCTTGA  750

seq1  GTCCTCCTCTGATGACCCAAGAGTCTGAAGGCCTCCCAGGAGATCTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCCTCTGATGACCCAAGAGTCTGAAGGCCTCCCAGGAGATCTTCTA  800

seq1  CAGCCAGGGGTATGGATCAGTAGC-TTCTTCACTTCTCTTAAGACTCCCA  849
      |||||||||||||||||||||||| ||||||||||||  | |||||||||
seq2  CAGCCAGGGGTATGGATCAGTAGCTTTCTTCACTTCTTCTTAGACTCCCA  850

seq1  ACTGGAAAGGCCTACAGGAGGTC-TACTACAT-CCAGTAGCATAGGCCTA  897
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  ACTGGAAAGGCCTACAGGAGGTCTTACTACATCCCAGTAGCATAGGCCTA  900

seq1  CCAGGTGACCTGAAACAACC-AAGGGACAAAGGGGGAAGATTCCAAACAG  946
      ||| |||||||||||||||| ||||||||| ||||||||||||||| |||
seq2  CCA-GTGACCTGAAACAACCAAAGGGACAATGGGGGAAGATTCCAACCAG  949

seq1  ACTCACGCAGACTAGC-AAACACCAGTGATAACCAGATGAGTT-GAGGCA  994
      |||||||||||||| | |||||||||||||||||||||||||| ||||||
seq2  ACTCACGCAGACTATCAAAACACCAGTGATAACCAGATGAGTTGGAGGCA  999

seq1  ACCACAATACCG-TAAGCAAAA-GAAAGCA-ATACACATCAGCAT  1036
      ||||| |||||| || |||||| ||||||| |||||| |||||||
seq2  ACCACTATACCGTTAGGCAAAAGGAAAGCATATACACTTCAGCAT  1044


seq1: chr13_15331103_15331637
seq2: B6Ng01-199I10.g_552_1099 (reverse)

seq1  CAACGTA---CCCAAACTTATGGGACACAAT-GAAAGCATTTCTAAGA-G  45
      |||||||   || ||||||||||||| |||| |||||||||||||||| |
seq2  CAACGTAACCCCAAAACTTATGGGACCCAATGGAAAGCATTTCTAAGAGG  50

seq1  GGAAACTCAT-AGC-TCTGAGTGCCTCCAAGAA--AAAACGG-GAGAGA-  89
      |||||||||| ||| ||||||||||||| ||||  |||||||  ||||| 
seq2  GGAAACTCATAAGCTTCTGAGTGCCTCCCAGAAAGAAAACGGTAAGAGAG  100

seq1  GCACATACTAGCAGCTTGACAAC-ACATCTAAAAGCTCTAGAAAAAAA-G  137
      ||||||||||||||||||||||| |||||||||||||||| ||||||| |
seq2  GCACATACTAGCAGCTTGACAACAACATCTAAAAGCTCTATAAAAAAAGG  150

seq1  GAAGCAAATTCACCCAAGAGGAGTAGACGGCAGGAAATAATCAAACTCA-  186
      ||||||||||||||||||||||||||||  ||||||||||||||||||| 
seq2  GAAGCAAATTCACCCAAGAGGAGTAGACTACAGGAAATAATCAAACTCAG  200

seq1  GGGGTGAAATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAAC  236
      |||||||||||| | |||||| ||||||||||||||||||||||||||||
seq2  GGGGTGAAATCACCAAAGTGG-AACAAGAAGAACTATTCAAAGAATTAAC  249

seq1  CAAACGAGGAGTTGGTTCTTTGAGAAAATC-AACAAGATAGATAAACCCT  285
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CAAACGAGGAGTTGGTTCTTTGAGAAAATCAAACAAGATAGATAAACCCT  299

seq1  TAGCTAGACTCACTAGAGGGCACAGAGACAAAATCCTAATTAACAAAATC  335
      ||||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  TAGCTAGACTCACTAGAGGGCACAGGGACAAAATCCTAATTAATAAAATC  349

seq1  AGAACTGAAAAGGGAGACATAACAACAGATCCTGAAGAAATCCAAAACAC  385
      ||||||||||||||||||||||||||| |||||||||||||||||| |||
seq2  AGAACTGAAAAGGGAGACATAACAACAAATCCTGAAGAAATCCAAAGCAC  399

seq1  CATCAGATCATTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGG  435
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACCTGG  449

seq1  ACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAATGGACAAATTTCTGGACAGATACCAGGTACCAAAGTTGAATCAG  499

seq1  GATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAGGAAATAGAGGC  535
      ||||||||||| | |||||||||||| ||||||||||| | |||||| ||
seq2  GATCAAGTTGAACATCTAAACAGTCCTATATCCCCTAAAG-AATAGAAGC  548


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