BAC Information

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BAC

Clone NameB6Ng01-200D03
Chromosome13 (Build37)
Map Location 99,963,329 - 99,964,482
singlet/doubletsinglet
Overlap geneZfp366
Upstream geneRgnef, LOC667703, Utp15, Ankra2, EG667718, Btf3, Foxd1, LOC100039827, LOC100039665, LOC100039854, LOC218501, Tmem174, Tmem171, LOC669675, Fcho2, Tnpo1, EG432798, LOC100039771, 1700024P04Rik, LOC100039967, LOC100039797
Downstream genePtcd2, Mrps27, Mtap1b, Cartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200D03.bB6Ng01-200D03.g
ACCGA021326GA021327
length1,1731,179
definitionB6Ng01-200D03.b B6Ng01-200D03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctgaatgtacacttaaagagaaaatacagaaacggaatagcac
tggcagccttgactcattctgggtgctttttgcattcagttaaatgttgc
aagccaagaggacaggcagagcaggccagggtgtgcggccaggactctgg
ctgtatgtacacctatggcgggaacataaagggcaccaacactttgggaa
cagtgtaagatacatagccaccatagaatttgacttcacgtctaaataat
atgtttaaatgaaaacttggcctattcacgagaaaattgcttataagaat
tccaaactaataataacccaatgggacatcattcagttactaggatctgc
tatgtttgtgcagtggaatactgctcaggcctgaaaaccggcttctgata
cagcccatactgtgagtgagtcttagaatcatcccttgaatcagaagatc
caggcataatactactgaacgttactgacatacaagatctacgttgacag
cctttatccatatgaaatttctagaaggacaaaatgatagagacaaagat
ttgatttgcgcttttctggagctggggttgggcatatagaaggactgtta
ataagtataaaggaatgcttgagattgatgacattattctaaaactggat
tttagtgatgattgaactttctaaattgcatcacactgaatatttaaaaa
cacttagttttatactatgtaaattatacctcaataaaattgaaagaaca
gtctcccaatctgtatggttccagagaaaggccacaatgccacaatctca
tagaatggattatttcctataagcaaaacaaaaacaaaagcctagttttt
catttgtgtaggatatctctagaaagatatgatggacttgttaatagaac
ttggcttttgggaaagagactggagagatagaattggtagtccttgattc
cttacctccagcattgccatgtcttctaaccccgggaccttagccgttgt
ggatgtcagcttgctgtgctcagctaaaaatgaacaagttggaccatgta
atggctaaggatgccatctgctgccaatttcctgcatcctttaagaatgt
accctcatggcattctttttcctattcaccaacctgaaacaattgtaact
aatgtaacaatgtaacttaaatg
gaattctaccttcttggtttagaattaagttgattgtattgcttttactg
atttccctgcttctggggaaatgtggtactagagagaggcatcaggtgtt
tgtgtgatgctttcttttgcagaatgagacttcctgcgggtagctggtta
ggagaaatcccaggcagcagtaacctctgcacctattttaagaacaatta
tataattctattaccctgagtatatacaagcaaatgcatctactttatac
tgacatattgaataagtggctggagagatggctcggtggctaagaacata
atacttttatagagaatctgggtttgttttccaacccttgtgccccatca
tgcaggtcacaattgcttataactccagctccaggagatctgactctctt
ttccccacatggccacctgtacacacatggtacacataaacgcaaataga
cacataaacacacatataaaacatatctttaaaatatggaattgagaagg
ctaggctaactctatgacaggcttcaaattggcaatttaggggactaagc
ctaaaaactgggcaagtccaggcaagccgaggtgaatcagttactagaaa
aaaccaacaaaccaggcttcaggcagctagtcagaaactgtcctgccctc
aaaagctgcccagccacctggcctgaggcaagaacagtgggtgagcagct
gtctccagacttctttagctacttcttcagcaatggtttccagacctccc
cagcaacaatttccagccccaacatcccagtaattggaatgtcccctaaa
gatggagtaagataaaggtcacctactctggaatcccctattgtgcttca
aatcaggcctgtgagctcacttggttggcttcttctatctttgttaacgg
aagaccccagcatgttggactttctgcagaaataaacacttctttgcttt
tatattactgttgagtctggggtatcattctgaatgaatcatgaaccctt
taaggattcactttttgccagcatattttagattaattattaatatgaac
actgaagaatatataaatactgctttctaacttattaattagttttctaa
cttattgaatccttatccttgatcatacctgatctggttaagcctcgcat
cctggacttgaaatggtactctctagtcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_99963329_99964482
seq2: B6Ng01-200D03.b_49_1221

seq1  GAATTCTCTGAATGTACACTTAAAGAGAAAATACAGAAACGGAATAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAATGTACACTTAAAGAGAAAATACAGAAACGGAATAGCAC  50

seq1  TGGCAGCCTTGACTCATTCTGGGTGCTTTTTGCATTCAGTTAAATGTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCCTTGACTCATTCTGGGTGCTTTTTGCATTCAGTTAAATGTTGC  100

seq1  AAGCCAAGAGGACAGGCAGAGCAGGCCAGGGTGTGCGGCCAGGACTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAAGAGGACAGGCAGAGCAGGCCAGGGTGTGCGGCCAGGACTCTGG  150

seq1  CTGTATGTACACCTATGGCGGGAACATAAAGGGCACCAACACTTTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTACACCTATGGCGGGAACATAAAGGGCACCAACACTTTGGGAA  200

seq1  CAGTGTAAGATACATAGCCACCATAGAATTTGACTTCACGTCTAAATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAAGATACATAGCCACCATAGAATTTGACTTCACGTCTAAATAAT  250

seq1  ATGTTTAAATGAAAACTTGGCCTATTCACGAGAAAATTGCTTATAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTAAATGAAAACTTGGCCTATTCACGAGAAAATTGCTTATAAGAAT  300

seq1  TCCAAACTAATAATAACCCAATGGGACATCATTCAGTTACTAGGATCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACTAATAATAACCCAATGGGACATCATTCAGTTACTAGGATCTGC  350

seq1  TATGTTTGTGCAGTGGAATACTGCTCAGGCCTGAAAACCGGCTTCTGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTGTGCAGTGGAATACTGCTCAGGCCTGAAAACCGGCTTCTGATA  400

seq1  CAGCCCATACTGTGAGTGAGTCTTAGAATCATCCCTTGAATCAGAAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCATACTGTGAGTGAGTCTTAGAATCATCCCTTGAATCAGAAGATC  450

seq1  CAGGCATAATACTACTGAACGTTACTGACATACAAGAAGT--GTTGACAG  498
      |||||||||||||||||||||||||||||||||||||  |  ||||||||
seq2  CAGGCATAATACTACTGAACGTTACTGACATACAAGATCTACGTTGACAG  500

seq1  CCTTTATCCATATGAAATTTCTAGAAGGACAAAATGATAGAGACAAAGAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATCCATATGAAATTTCTAGAAGGACAAAATGATAGAGACAAAGAT  550

seq1  TTGATTTGCGCTTTTCTGGAGCTGGGGTTGGGCATATAGAAGGACTGTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTGCGCTTTTCTGGAGCTGGGGTTGGGCATATAGAAGGACTGTTA  600

seq1  ATAAGTATAAAGGAATGCTTGAGATTGATGACATTATTCTAAAACTGGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTATAAAGGAATGCTTGAGATTGATGACATTATTCTAAAACTGGAT  650

seq1  TTTAGTGATGATTGAACTTTCTAAATTGCATCACACTGAATATTTAAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGATGATTGAACTTTCTAAATTGCATCACACTGAATATTTAAAAA  700

seq1  CACTTAGTTTTATACTATGTAAATTATACCTCAATAAAATTGAAAGAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGTTTTATACTATGTAAATTATACCTCAATAAAATTGAAAGAACA  750

seq1  GTCT-CCAATCTGTATGGTTCCAGAG-AAGGCCACAATGCCACAATCTCA  796
      |||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTCTCCCAATCTGTATGGTTCCAGAGAAAGGCCACAATGCCACAATCTCA  800

seq1  TAGAATGGATTA-TTCCTATAAGCAAAACAAAAACAAAAGCCTAG-TTTT  844
      |||||||||||| |||||||||||||||||||||||||||||||| ||||
seq2  TAGAATGGATTATTTCCTATAAGCAAAACAAAAACAAAAGCCTAGTTTTT  850

seq1  CATTTGTGTAGGATATCTCTAGAAAGATATGATGGACTTGTTAATAGAAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGTAGGATATCTCTAGAAAGATATGATGGACTTGTTAATAGAAC  900

seq1  TTGGC-TTTGGGAAAGAGACTGGAGAGATAGAAT--GGAGT-CTTGATTC  940
      ||||| ||||||||||||||||||||||||||||  | ||| ||||||||
seq2  TTGGCTTTTGGGAAAGAGACTGGAGAGATAGAATTGGTAGTCCTTGATTC  950

seq1  C-TACCTCAGGCA-TGCCAGGTC-TCTAACCCCGGGACCTTAGCCG-TGT  986
      | ||||||  ||| ||||| ||| |||||||||||||||||||||| |||
seq2  CTTACCTCCAGCATTGCCATGTCTTCTAACCCCGGGACCTTAGCCGTTGT  1000

seq1  -GATG-CAGC-TGCTGTGCCTCAGCTAAAAATGAACAGGTTGGACCA-GT  1032
       |||| |||| ||||||| |||||||||||||||||| ||||||||| ||
seq2  GGATGTCAGCTTGCTGTG-CTCAGCTAAAAATGAACAAGTTGGACCATGT  1049

seq1  AATGTCTAAGGATG-CATCTGGCTGC--AATTCCTGTCATTCTTTAAGAA  1079
      |||| ||||||||| ||||| |||||  | |||||| ||| |||||||||
seq2  AATGGCTAAGGATGCCATCT-GCTGCCAATTTCCTG-CATCCTTTAAGAA  1097

seq1  TG--ACCTCATGGTTTTC-TTTTCCTA-TCACCAACTTATAACAAAATGT  1125
      ||   ||||||||  ||| |||||||| |||||||| |  ||| || |||
seq2  TGTACCCTCATGGCATTCTTTTTCCTATTCACCAACCTGAAAC-AATTGT  1146

seq1  AACTAAATGTAACAAAATGTAAC-TAAATG  1154
      |||| ||||||||  |||||||| ||||||
seq2  AACT-AATGTAAC--AATGTAACTTAAATG  1173