BAC Information

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BAC

Clone NameB6Ng01-200J18
Chromosome13 (Build37)
Map Location 89,995,006 - 89,996,087
singlet/doubletsinglet
Overlap geneXrcc4
Upstream geneEdil3, Hapln1, EG667266, Vcan, LOC100042940
Downstream geneTmem167, LOC100043170, LOC624190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-200J18.bB6Ng01-200J18.g
ACCGA021622GA021623
length7991,086
definitionB6Ng01-200J18.b B6Ng01-200J18.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctctaataagctttaaattcagcctacaagctcacttgggagtc
tccatttgtaatgggagacaccagcatgctagacttctgcaggaaaacaa
acaaacaaacaaaaccctctttgtgtttaaatactatgtgtctgggttat
cattctttggcaaatcatggacccttagatgctcatatacggtcccgagg
acagccagagctggggccatctggttgtcacgctcttggacacccaggca
ctcctgggagtggaagaactaagaacagagtggggcccttgagctcgatt
tagcctgggaccaatggggaaagggaggggttggtgagctccagctggat
gatcctgcagggatagagttcttggtttgttgggcttggcttggtggagg
ccttgctgggagctttgagaggacttctgcagtagattaggtggctggct
ccttagatgcaggcctgttcaattgttctccacagcggatcccaatgaaa
agagacagttcatggttttaagaaatttattgtcatggcagaaaggggat
gagtaaaaccataccccactttctcagagtgggcctgaggttaaatacct
tttgcagggaggagtgtctggaaaggggagtttattggctaagcctccag
gccttcaggtacctcatttaaaatgcagctctgtcttgaggctatattta
cctgaggttatggtcctctacttgtggagaggactgggggcattgcccct
tacacaactgaaggacacaaacctattggagggttgtgggcctcttgtc

gaattcactggtctagatgtcattcattggcctgagaaagtgagggagga
gaggctgactctcctggcaaccaaaatggcaagcaagagaaactcatagt
tattttcaattaaattcacagatatcttccactactcatggccctgttta
aacacatgagcaagaacacatcaataacctgtgaaatatatgtttaataa
aacaagaaaatagtaataaaagtagctatatttaaccctataatgcattg
aatggtttataaacattgtaaaaggacaactctaaaaaattcctgtaaaa
tatctccaatagatttgaaaataagattatcagggattaaggaactggct
cagtaggtacacaaagttgccacaaaacactgatggctggagttgaatcc
ctgggacccattgtaaaggtagatggagagaaccaactccacagggttgt
gcttggagttctggatataaactgaggtttaaaaccacccattaagtaaa
tacacccataattcctaagaatggaggcactcatacagaaatttcattaa
ataacccaaaagatttttattgtctgataaacttatttggataaataata
ttgttctggcaaccaatcagtagacaagttgacacatgctttacaaacca
cttgtgaatatcttaagctccactttactggtttgaattggcacaggtga
tatttgctgctcagtgtactacacatgaatccttcttgggagagctctgt
tttattttacctggtaccatgtttgcccacaaatattccagtgattgcat
gtattaacaatgacaaatgactaaatgaatgaggtagacagtactgaggg
gaaggctcattaaaatcaaataacagcccaaacacagcagagacgatggt
ggtaagcagtcaggctgcaaagccagggttgggacttgatgctgtcatca
ctctaaagcccaacagtgccttgtgcctcactaggtacctgggaattact
gaatttctgtattcctcaaggatgcctcctacctctcagagtgtaacatt
aatgtgattatgggcacgttccaaagttgttctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_89995006_89996087
seq2: B6Ng01-200J18.g_67_1152

seq1  GAATTCACTGGTCTAGATGTCATTCATTGGCCTGAGAAAGTGAGGGAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGTCTAGATGTCATTCATTGGCCTGAGAAAGTGAGGGAGGA  50

seq1  GAGGCTGACTCTCCTGGCAACCAAAATGGCAAGCAAGAGAAACTCATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGACTCTCCTGGCAACCAAAATGGCAAGCAAGAGAAACTCATAGT  100

seq1  TATTTTCAATTAAATTCACAGATATCTTCCACTACTCATGGCCCTGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAATTAAATTCACAGATATCTTCCACTACTCATGGCCCTGTTTA  150

seq1  AACACATGAGCAAGAACACATCAATAACCTGTGAAATATATGTTTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATGAGCAAGAACACATCAATAACCTGTGAAATATATGTTTAATAA  200

seq1  AACAAGAAAATAGTAATAAAAGTAGCTATATTTAACCCTATAATGCATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGAAAATAGTAATAAAAGTAGCTATATTTAACCCTATAATGCATTG  250

seq1  AATGGTTTATAAACATTGTAAAAGGACAACTCTAAAAAATTCCTGTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTTTATAAACATTGTAAAAGGACAACTCTAAAAAATTCCTGTAAAA  300

seq1  TATCTCCAATAGATTTGAAAATAAGATTATCAGGGATTAAGGAACTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCCAATAGATTTGAAAATAAGATTATCAGGGATTAAGGAACTGGCT  350

seq1  CAGTAGGTACACAAAGTTGCCACAAAACACTGATGGCTGGAGTTGAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGTACACAAAGTTGCCACAAAACACTGATGGCTGGAGTTGAATCC  400

seq1  CTGGGACCCATTGTAAAGGTAGATGGAGAGAACCAACTCCACAGGGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACCCATTGTAAAGGTAGATGGAGAGAACCAACTCCACAGGGTTGT  450

seq1  GCTTGGAGTTCTGGATATAAACTGAGGTTTAAAACCACCCATTAAGTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAGTTCTGGATATAAACTGAGGTTTAAAACCACCCATTAAGTAAA  500

seq1  TACACCCATAATTCCTAAGAATGGAGGCACTCATACAGAAATTTCATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCATAATTCCTAAGAATGGAGGCACTCATACAGAAATTTCATTAA  550

seq1  ATAACCCAAAAGATTTTTATTGTCTGATAAACTTATTTGGATAAATAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCCAAAAGATTTTTATTGTCTGATAAACTTATTTGGATAAATAATA  600

seq1  TTGTTCTGGCAACCAATCAGTAGACAAGTTGACACATGCTTTACAAACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTGGCAACCAATCAGTAGACAAGTTGACACATGCTTTACAAACCA  650

seq1  CTTGTGAATATCTTAAGCTCCACTTTACTGGTTTGAATTGGCACAGGTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGAATATCTTAAGCTCCACTTTACTGGTTTGAATTGGCACAGGTGA  700

seq1  TATTTGCTGCTCAGTGTACTACACATGAATCCTTCTTGGGAGAGCTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCTGCTCAGTGTACTACACATGAATCCTTCTTGGGAGAGCTCTGT  750

seq1  TTTATTTTACCTGGTACCATGTTTGCCCACAAATATTCCAGTGATTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTACCTGGTACCATGTTTGCCCACAAATATTCCAGTGATTGCAT  800

seq1  GTATTAACAATGACAAATGACTAAATGAATGAGGTAGACAGTACTGAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAACAATGACAAATGACTAAATGAATGAGGTAGACAGTACTGAGGG  850

seq1  GAAGGCTCATTAAAATCAAATAACAGCCCAAACACAGCAGAGACGATGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCATTAAAATCAAATAACAGCCCAAACACAGCAGAGACGATGGT  900

seq1  GGTAAGCAGTCAGGCTGCAAAGCCAGGG-TGGGACTTGATGCTGTCATCA  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GGTAAGCAGTCAGGCTGCAAAGCCAGGGTTGGGACTTGATGCTGTCATCA  950

seq1  CTCTAAAG-CCAACAGTG-CTTGTGCCTCACTAGGTACCTGGG-ATTACT  996
      |||||||| ||||||||| |||||||||||||||||||||||| ||||||
seq2  CTCTAAAGCCCAACAGTGCCTTGTGCCTCACTAGGTACCTGGGAATTACT  1000

seq1  G-ATTTCTGTATTTCCTCCAAGGATG-CTCCTA-CTCTCAGGAGTGTAAC  1043
      | ||||||||| ||||| |||||||| |||||| |||||| |||||||||
seq2  GAATTTCTGTA-TTCCT-CAAGGATGCCTCCTACCTCTCA-GAGTGTAAC  1047

seq1  ATTAATGTGGATAT-GGCACGTCCCAAAAGTTGTCCTGTA  1082
      |||||||||  ||| ||||||| || |||||||| |||||
seq2  ATTAATGTGATTATGGGCACGTTCC-AAAGTTGTTCTGTA  1086


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