BAC Information

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BAC

Clone NameB6Ng01-201A02
Chromosome13 (Build37)
Map Location 22,970,591 - 22,971,153
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494, V1rh8, V1rh7, LOC382740, LOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20
Downstream geneV1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201A02.bB6Ng01-201A02.g
ACCGA021901GA021902
length549986
definitionB6Ng01-201A02.b B6Ng01-201A02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctgatctttccaaagctttaaaaatgaaggggtgttgggtttcatcaaag
gctttttcaacatctattaagatgaagatgtaattttattttgagtttgt
ttatgtagtggattacattgatggatttctgtatattgaacgaaccatcc
ttgcttccctaggatgagccctcctggatcatggtgaatgatagttttta
tgtgttcttggaatcggtttgtgggaatcttattgagtagtttttgcttc
ggtattcattaagggagtttggtctgaagttctttttcattgttgggtct
ttgtgtggcttttttgtgtggcttaggagtcagcataactatggcttcat
ggaaggaattaagtagtattccttttgtttctattttgtgggatattttg
ggaagttttgatattagacattctttgaagatctgctagaattcttcact
aaaatcatctggccatagactccatttttagttaggagatttttctattt
ccttagggtttacgggactgtttagaaattttatctggtctttatctaa
gaattcctgtctagacacctagccctgggtgggtatgagcctaagacaga
cagaaacttgggctggatgagagagaactgggcctaagacaattaccaaa
ttggtaccatggggccagaacaaggagcttgcccaagatgaacattattc
tagcactgcctaagcctgggggttcagggcaaaccatccttgagatgact
catgactgtcatcataatgaatgagtagagcgtagcacttctgagaggac
tcttaaaacaacccaataatcagagacgctcaactctgggtgccactaag
aggagaaagtaagagatggagaaaaggaagagaaagataaacagaagaat
gtgggctcaacagcagcagcagcaacaacaacatcaacaacaacaacaac
ttcaaaattagagaatcgagggtagtatgaaaaagcctgatgttagtaac
cagtgatatgtcctgggaccatggtgaggttctgtgctgacactcacagc
taagtctagatggatgtacttgcagttgcaggggtctgttaccaccaacg
acctggtagatgtacctggtctggccttctattggggacatgtagatgtc
tgagggctgtgcagaactggccccacccctcaactggacattgtgggaga
gctgtccttgaggcatgagagacagaaaggtgacctggcccctggcagca
gtactccgggagaggacctttcacattgcaggagttatttgtgagccagc
tccgaagatgcaaatgtaggagagctgttcctaccactcatctccccgtg
gtggcatagaggagggagaaataccttcttcccccctcctcccctcacca
cctgagcagatggaagaccttgccctcccggtcataagagcattagaact
ggctcgacttcttcactagcctgcagcactcagaaggaggcagaccctgc
acctcaactgggcagcacagtagagctgggcctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22970591_22971153
seq2: B6Ng01-201A02.g_66_628 (reverse)

seq1  ACATCTACCAGGTCGTTGGTGGTAACAGACCCCTGCAACTGCAAGTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTACCAGGTCGTTGGTGGTAACAGACCCCTGCAACTGCAAGTACAT  50

seq1  CCATCTAGACTTAGCTGTGAGTGTCAGCACAGAACCTCACCATGGTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTAGACTTAGCTGTGAGTGTCAGCACAGAACCTCACCATGGTCCCA  100

seq1  GGACATATCACTGGTTACTAACATCAGGCTTTTTCATACTACCCTCGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACATATCACTGGTTACTAACATCAGGCTTTTTCATACTACCCTCGATT  150

seq1  CTCTAATTTTGAAGTTGTTGTTGTTGTTGATGTTGTTGTTGCTGCTGCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATTTTGAAGTTGTTGTTGTTGTTGATGTTGTTGTTGCTGCTGCTG  200

seq1  CTGTTGAGCCCACATTCTTCTGTTTATCTTTCTCTTCCTTTTCTCCATCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGAGCCCACATTCTTCTGTTTATCTTTCTCTTCCTTTTCTCCATCT  250

seq1  CTTACTTTCTCCTCTTAGTGGCACCCAGAGTTGAGCGTCTCTGATTATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTTTCTCCTCTTAGTGGCACCCAGAGTTGAGCGTCTCTGATTATTG  300

seq1  GGTTGTTTTAAGAGTCCTCTCAGAAGTGCTACGCTCTACTCATTCATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTTAAGAGTCCTCTCAGAAGTGCTACGCTCTACTCATTCATTAT  350

seq1  GATGACAGTCATGAGTCATCTCAAGGATGGTTTGCCCTGAACCCCCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAGTCATGAGTCATCTCAAGGATGGTTTGCCCTGAACCCCCAGGC  400

seq1  TTAGGCAGTGCTAGAATAATGTTCATCTTGGGCAAGCTCCTTGTTCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAGTGCTAGAATAATGTTCATCTTGGGCAAGCTCCTTGTTCTGGC  450

seq1  CCCATGGTACCAATTTGGTAATTGTCTTAGGCCCAGTTCTCTCTCATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGTACCAATTTGGTAATTGTCTTAGGCCCAGTTCTCTCTCATCCA  500

seq1  GCCCAAGTTTCTGTCTGTCTTAGGCTCATACCCACCCAGGGCTAGGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGTTTCTGTCTGTCTTAGGCTCATACCCACCCAGGGCTAGGTGTC  550

seq1  TAGACAGGAATTC  563
      |||||||||||||
seq2  TAGACAGGAATTC  563