BAC Information

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BAC

Clone NameB6Ng01-201B06
Chromosome13 (Build37)
Map Location 6,538,835 - 6,759,516
singlet/doubletdoublet
Overlap genePitrm1, Pfkp, LOC100039532
Upstream gene1700016G22Rik, Klf6, LOC100039388, LOC100039395
Downstream geneLOC667611, EG623516
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-201B06.bB6Ng01-201B06.g
ACCGA021952GA021953
length1,1601,135
definitionB6Ng01-201B06.b B6Ng01-201B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,538,835 - 6,539,988)(6,758,394 - 6,759,516)
sequence
gaattcattaaagtgataaaaatactctgataaagcaacttaaggaagga
agtgtttattttagctcaaagtttggggtccagtagatcacagcagggaa
gtcaagacagctagaagctagaagcacattatgtccacagtcagaagaaa
gcaatggatgcaccacttctagtgcttaggcccattctccattttataga
ggccaaggccactgacaaggaaagatgccacgcataggaagtgggtcctc
ctacctcaatgacataatcaagataattcctcatactcgtgaccaagccc
atttccctaatgagtccagaatctgtccggttgacaatcaatattcacta
atcatcagagtactgcttatctgttctttcattctgcacaactgtagggc
agttgtattgttcatttaatgactttgaaaattaaaaatatttgcctaag
agtgctggagaggtagcttggtggttaagagcactggttgctctttctga
ggacccacaactctgtaactctagttccatgagatccaatgcctccttta
gacctctgcaggcaacaggcacacacagagatacatgtatacaagcggta
acatacacgtacacacaatgtaataaaataaaaaattagtttcaaaattt
aaaaagaatctgtaataaaactataaggcatatgaagtaaattaatcatg
ttgctcaaaaagaagtcttgattctcctcttggatgctgggagacctcct
ttcagatattttaaagttttatgtgtcacaagatcttgtgtagtattgtt
taatttcatatgagattatggggcttagggtcaaacaggtgttggtcttc
tcctaagtccatgtggagtcacaaccctgaaggcattaaggataaaaggg
catgactctgagagggggattataaccctcacaaatggattctgaagttg
aaaggacccagttctccctcttctgttccttcttcttttatgaggaatat
attattattgtccccttcatagagtagagtaacaaaagtattccaccatt
gaaagcagagaacacctgtccccagacatgaacttcgatgcttggattgg
tgatccttcacagtctattaagaaataacatttatagcctttattccaca
caaatagaga

gaattcagtaggaaaaatggcaagcatcgatataaatttggagtggaaca
acaacaacaaataccacagcaaacaattgagaaatgaatcaccagagaag
ggagtttttttcaagactcagacgatattctgtatgagatgacgatagta
gcttcatctcactgtgcacacacacacacacacacacacacacacacaca
cacacacacacacacatgcatgtacaatatctaaataaattcactcaatt
aagcaaataaacattgctttaatggatgctcttaaattccactgacaacc
aaaccagaatgttctcctttttacaagctagaaactcttgcgtttatttg
ctggtccaagaaggaagaagaattcagaatgcctggggagacccagggag
cttaagatgaacagtctgagttgtaggcctctgttctgcagacccagctg
ctgacagacagtcaactaagatcagttcccttgctcggctgaaaagttat
ccccaaagctctacagatccagcccctagagaataaccctctggatgatt
ctcccagccagctagatacaacacagtcaaatcctttaatgactccaaga
gctttctagtacagtgagatcctatttgtatgaaagtcactacagagcaa
tctccaagacaaccaacacacacatggcattttttcactggccccagaaa
atgtacctcctgtttttgaattctatcaaaagtatgttttttgtgaggac
cagagagaggaatattgctggtatatttctccattgacttgtgacaattc
cctcttatttgtaagcttatgttttcctgatgaaatgtcaggaaaaggat
gagtttaagatttttaattatttgtgaaataaacaaacagacaaaacaaa
caactggtgatgttacattaacttttctgaagataaaggaacaaacttct
actcaccccaaagagagcacctataggcatcgaagaaaccaattcactca
ctctagctagacagccaatgagctcattggtgtttcttacaggagaataa
gaaaagattcaaggatcaaaggcgttggcccacaagcctaccaccaaatg
gggtgcaactcacaattctgccatttccaggagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_6538835_6539988
seq2: B6Ng01-201B06.b_52_1211

seq1  GAATTCATTAAAGTGATAAAAATACTCTGATAAAGCAACTTAAGGAAGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAAGTGATAAAAATACTCTGATAAAGCAACTTAAGGAAGGA  50

seq1  AGTGTTTATTTTAGCTCAAAGTTTGGGGTCCAGTAGATCACAGCAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTATTTTAGCTCAAAGTTTGGGGTCCAGTAGATCACAGCAGGGAA  100

seq1  GTCAAGACAGCTAGAAGCTAGAAGCACATTATGTCCACAGTCAGAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGACAGCTAGAAGCTAGAAGCACATTATGTCCACAGTCAGAAGAAA  150

seq1  GCAATGGATGCACCACTTCTAGTGCTTAGGCCCATTCTCCATTTTATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGATGCACCACTTCTAGTGCTTAGGCCCATTCTCCATTTTATAGA  200

seq1  GGCCAAGGCCACTGACAAGGAAAGATGCCACGCATAGGAAGTGGGTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGGCCACTGACAAGGAAAGATGCCACGCATAGGAAGTGGGTCCTC  250

seq1  CTACCTCAATGACATAATCAAGATAATTCCTCATACTCGTGACCAAGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTCAATGACATAATCAAGATAATTCCTCATACTCGTGACCAAGCCC  300

seq1  ATTTCCCTAATGAGTCCAGAATCTGTCCGGTTGACAATCAATATTCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCCTAATGAGTCCAGAATCTGTCCGGTTGACAATCAATATTCACTA  350

seq1  ATCATCAGAGTACTGCTTATCTGTTCTTTCATTCTGCACAACTGTAGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCAGAGTACTGCTTATCTGTTCTTTCATTCTGCACAACTGTAGGGC  400

seq1  AGTTGTATTGTTCATTTAATGACTTTGAAAATTAAAAATATTTGCCTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTATTGTTCATTTAATGACTTTGAAAATTAAAAATATTTGCCTAAG  450

seq1  AGTGCTGGAGAGGTAGCTTGGTGGTTAAGAGCACTGGTTGCTCTTTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGAGAGGTAGCTTGGTGGTTAAGAGCACTGGTTGCTCTTTCTGA  500

seq1  GGACCCACAACTCTGTAACTCTAGTTCCATGAGATCCAATGCCTCCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCACAACTCTGTAACTCTAGTTCCATGAGATCCAATGCCTCCTTTA  550

seq1  GACCTCTGCAGGCAACAGGCACACACAGAGATACATGTATACAAGCGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGCAGGCAACAGGCACACACAGAGATACATGTATACAAGCGGTA  600

seq1  ACATACACGTACACACAATGTAATAAAATAAAAAATTAGTTTCAAAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACGTACACACAATGTAATAAAATAAAAAATTAGTTTCAAAATTT  650

seq1  AAAAAGAATCTGTAATAAAACTATAAGGCATATGAAGTAAATTAATCATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAATCTGTAATAAAACTATAAGGCATATGAAGTAAATTAATCATG  700

seq1  TTGCTCAAAAAGAAGTCTTGATTCTCCTCTTGGATGCTGGGAGACCTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCAAAAAGAAGTCTTGATTCTCCTCTTGGATGCTGGGAGACCTCCT  750

seq1  TTCAGATATTTTAAAGTTTTATGTGTCACAAGATCTTGTGTAGTATTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATATTTTAAAGTTTTATGTGTCACAAGATCTTGTGTAGTATTGTT  800

seq1  TAATTTCATATGAGATTATGGGGCTTAGGGTCAAACAGGTGTTGGTCTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCATATGAGATTATGGGGCTTAGGGTCAAACAGGTGTTGGTCTTC  850

seq1  TCCTAAGTCCATGTGGAGTCACAACCCTGAAGGCATT-AGGATAAAAGGG  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCCTAAGTCCATGTGGAGTCACAACCCTGAAGGCATTAAGGATAAAAGGG  900

seq1  CATGACTCTGAGAGGGGGATTATAACCCTCACAAATGGA-TCTGAAGTTG  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CATGACTCTGAGAGGGGGATTATAACCCTCACAAATGGATTCTGAAGTTG  950

seq1  AAAGGACCCAGTTCTCCCTCTTCTGTTCCTTC-TCTTTTATGAGGAAATA  997
      |||||||||||||||||||||||||||||||| ||||||||||||||   
seq2  AAAGGACCCAGTTCTCCCTCTTCTGTTCCTTCTTCTTTTATGAGGAA--T  998

seq1  ATATTA-TATTGTCCCCTTCATAGAGTAGAGTAAC-AAAGTAT--CACCA  1043
      |||||| |||||||||||||||||||||||||||| |||||||  |||||
seq2  ATATTATTATTGTCCCCTTCATAGAGTAGAGTAACAAAAGTATTCCACCA  1048

seq1  -TGAAAGCAGAGACCAACTGTCCCCAGACATTGAACCTTCGATGCCTTGA  1092
       |||||||||||| || ||||||||||||| |||| ||||||||| | ||
seq2  TTGAAAGCAGAGAACACCTGTCCCCAGACA-TGAA-CTTCGATGCTTGGA  1096

seq1  TT-GTGGT-CTTCACAGTCTTAATAAGAAATAAC-TTTATAGCCTTTATT  1139
      || ||| | |||||||||| || ||||||||||| |||||||||||||||
seq2  TTGGTGATCCTTCACAGTC-TATTAAGAAATAACATTTATAGCCTTTATT  1145

seq1  CAACACAAATAGAGA  1154
      | |||||||||||||
seq2  CCACACAAATAGAGA  1160


seq1: chr13_6758394_6759516
seq2: B6Ng01-201B06.g_66_1200 (reverse)

seq1  GGCT-CTGGAA--TGCAG-ATTGTGAGTTTGCA-CCCATTTTGTGGTGGG  45
      |||| ||||||   |||| |||||||| ||||| ||||||| ||||| ||
seq2  GGCTCCTGGAAATGGCAGAATTGTGAG-TTGCACCCCATTTGGTGGTAGG  49

seq1  CTTGTGGG-CAACG-CTTTGATCCTTG-ATC-TTTCTTATTCTCCTGTAA  91
      |||||||| ||||| |||||||||||| ||| ||||||||||||||||||
seq2  CTTGTGGGCCAACGCCTTTGATCCTTGAATCTTTTCTTATTCTCCTGTAA  99

seq1  GAAACACCAATGAGCTCATTGGCTTGTCTAGCTAGAGTTGAGTGAATTGG  141
      ||||||||||||||||||||||| ||||||||||||| ||||||||||||
seq2  GAAACACCAATGAGCTCATTGGC-TGTCTAGCTAGAG-TGAGTGAATTGG  147

seq1  TTTCTTCGATGCCTATAGGTGCTCTCTTTGGGGTGAGTAGAAGTTTGTTC  191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCGATGCCTATAGGTGCTCTCTTTGGGGTGAGTAGAAGTTTGTTC  197

seq1  C-TTATCTTCAGAAAAGTT-ATGTAACATCA-CAGTTGTTTG-TTTGTCT  237
      | ||||||||||||||||| ||||||||||| |||||||||| |||||||
seq2  CTTTATCTTCAGAAAAGTTAATGTAACATCACCAGTTGTTTGTTTTGTCT  247

seq1  GTTTGTTTATTTCACAAATAATTAAAAATCTTAAACTCATCCTTTTCCTG  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTATTTCACAAATAATTAAAAATCTTAAACTCATCCTTTTCCTG  297

seq1  ACATTTCATCAGGAAAACATAAGCTTACAAATAAGAGGGAATTGTCACAA  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCATCAGGAAAACATAAGCTTACAAATAAGAGGGAATTGTCACAA  347

seq1  GTCAATGGAGAAATATACCAGCAATATTCCTCTCTCTGGTCCTCAC-AAA  386
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTCAATGGAGAAATATACCAGCAATATTCCTCTCTCTGGTCCTCACAAAA  397

seq1  AACATACTTTTGATAGAATTC-AAAACAGGAGGTACATTTTCTGGGGCCA  435
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AACATACTTTTGATAGAATTCAAAAACAGGAGGTACATTTTCTGGGGCCA  447

seq1  GTGAAAAAATGCCATGTGTGTGTTGGTTGTCTTGGAGATTGCTCTGTAGT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAAATGCCATGTGTGTGTTGGTTGTCTTGGAGATTGCTCTGTAGT  497

seq1  GACTTTCATACAAATAGGATCTCACTGTACTAGAAAGCTCTTGGAGTCAT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCATACAAATAGGATCTCACTGTACTAGAAAGCTCTTGGAGTCAT  547

seq1  TAAAGGATTTGACTGTGTTGTATCTAGCTGGCTGGGAGAATCATCCAGAG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGATTTGACTGTGTTGTATCTAGCTGGCTGGGAGAATCATCCAGAG  597

seq1  GGTTATTCTCTAGGGGCTGGATCTGTAGAGCTTTGGGGATAACTTTTCAG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATTCTCTAGGGGCTGGATCTGTAGAGCTTTGGGGATAACTTTTCAG  647

seq1  CCGAGCAAGGGAACTGATCTTAGTTGACTGTCTGTCAGCAGCTGGGTCTG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCAAGGGAACTGATCTTAGTTGACTGTCTGTCAGCAGCTGGGTCTG  697

seq1  CAGAACAGAGGCCTACAACTCAGACTGTTCATCTTAAGCTCCCTGGGTCT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAGAGGCCTACAACTCAGACTGTTCATCTTAAGCTCCCTGGGTCT  747

seq1  CCCCAGGCATTCTGAATTCTTCTTCCTTCTTGGACCAGCAAATAAACGCA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGGCATTCTGAATTCTTCTTCCTTCTTGGACCAGCAAATAAACGCA  797

seq1  AGAGTTTCTAGCTTGTAAAAAGGAGAACATTCTGGTTTGGTTGTCAGTGG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCTAGCTTGTAAAAAGGAGAACATTCTGGTTTGGTTGTCAGTGG  847

seq1  AATTTAAGAGCATCCATTAAAGCAATGTTTATTTGCTTAATTGAGTGAAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAGAGCATCCATTAAAGCAATGTTTATTTGCTTAATTGAGTGAAT  897

seq1  TTATTTAGATATTGTACATGCATGTGTGTGTGTGTGTGTGTGTGTGTGTG  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGATATTGTACATGCATGTGTGTGTGTGTGTGTGTGTGTGTGTG  947

seq1  TGTGTGTGTGTGTGTGTGTGTGCACAGTGAGATGAAGCTACTATCGTCAT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGCACAGTGAGATGAAGCTACTATCGTCAT  997

seq1  CTCATACAGAATATCGTCTGAGTCTTGAAAAAAACTCCCTTCTCTGGTGA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACAGAATATCGTCTGAGTCTTGAAAAAAACTCCCTTCTCTGGTGA  1047

seq1  TTCATTTCTCAATTGTTTGCTGTGGTATTTGTTGTTGTTGTTCCACTCCA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCTCAATTGTTTGCTGTGGTATTTGTTGTTGTTGTTCCACTCCA  1097

seq1  AATTTATATCGATGCTTGCCATTTTTCCTACTGAATTC  1123
      ||||||||||||||||||||||||||||||||||||||
seq2  AATTTATATCGATGCTTGCCATTTTTCCTACTGAATTC  1135


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