BAC Information

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BAC

Clone NameB6Ng01-205J04
Chromosome13 (Build37)
Map Location 64,897,774 - 64,898,872
singlet/doubletsinglet
Overlap geneCntnap3
Upstream geneC030010C08Rik, 0610007P08Rik, 9330134C04Rik, EG665575, Hsd17b3, Slc35d2, Zfp367, Habp4, Cdc14b, 1110018J18Rik, Ctsl, Ccrk, LOC665612, 1190003K10Rik, LOC218298, Ppia-ps13_866.1, LOC238678, LOC631470
Downstream geneEG432767, 4930458L03Rik, LOC218301, LOC628515, 4932441B19Rik, Gm274, Hiatl1, LOC100042311, Olfr465-ps1, Olfr466, Nlrp4f, ENSMUSG00000074847, Zfp369, LOC100042347, LOC100042341, LOC665738, EG665742, LOC665750, LOC665753, EG544944, EG665767, LOC665777, EG628648, LOC665809, LOC100042404, LOC628722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-205J04.bB6Ng01-205J04.g
ACCGA025219GA025220
length1,118936
definitionB6Ng01-205J04.b B6Ng01-205J04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctcagtgaaatacccagacttcctttgttcaagggtagcactga
tttggaaataactcgtccattccttagccggtgcaagtagtctttctcta
ggctttacttcattttataattaactgcactgtaacttaatgggcagagt
gcttgcctaacatacctgagtccatgtgttctatctctagtacaagttac
aatgtcatgtgcatgtaaccctagcactggggaagtagaggcaggcagat
cagaaatccagtgccattcttggttacatagtgaatttgaggtcactcta
atctacataggaccctgtctcaaaaataaatgagtaagagtaaatatgaa
gtagactaaatgggtttaaaaagtgaagtatgaccatgtagaactagaga
agaagcagtgaatcgattggatgggagaatcgggctttttaggatgtgcc
agggtgcacttccttctcacgtacaagtgcttgctcccattctctgctga
tttctgctttcgtcatgtagagtgttaatttctgaggcatattaataacc
taccatccatgaagtattttatgtctctattttgttattaaaacccatcc
tatacaatccctaacttcctattattaacttcctaattctgcctgtttct
atggttagtgtttctatgaagtatcaaatgtaatggtggggttttaccat
ccacttccttttcctcctcccattggtcatttttctttcaccaaggtgtt
gtctttgaatctctgactgcacccactgttgtagtagctatgtttgtctg
atatttacaatttctctttgatgctatgaaattagtttgtctcccaatta
ctgtgaaacaacttcaggtgtactgacttcaaagcagagcatgctctttg
atggggctttttcctttcataagaaaactatttctcccattccttggggc
tcaaggttcgattatcagaagctgttgtgtcctgaacctaagaagggcca
ggtgactctttgaagcttatcataggatgtatagggtactgttagcttct
tgcaaacacaagctgtagaattataagttacttacctagccatttttttt
aaatgcaatagatcataa
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatccaacgagatgatcatgtggtttttgtcttt
gagtttgtttatatagtggattacattgatggattttcgtatattaaacc
atccctgcattcctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgatcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtactttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctggggtttttttggctgggagactatttataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
ttctttcaggctctgttgttatgtctccctttttcagttctgattttgtt
aatttagggttttgtctctgtgccctctagtgagttctagctaagggttt
atctatcttgttgatttttctcaaagaaccaactcctcgtttggttaatt
ctttgaatagtctttcttgttcccacttggttgatttcacccctgagttt
gattatttcctgcccgtctactcctctgggtgattttgcttccttttttt
ctagagcttttaaagtgtttggtcaagctgctaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_64897774_64898872
seq2: B6Ng01-205J04.b_47_1164 (reverse)

seq1  TTATGATCTATTTGCATTT--AAAAAATTGCTAG--TAGTTACTTAT-AT  45
      |||||||||| ||||||||  ||||||| |||||   ||| |||||| ||
seq2  TTATGATCTA-TTGCATTTAAAAAAAATGGCTAGGTAAGTAACTTATAAT  49

seq1  TCTACAGCTTGTGTTTGC-AGAAGCTAACAGTA-CCTATACATCCTATGA  93
      |||||||||||||||||| |||||||||||||| ||||||||||||||||
seq2  TCTACAGCTTGTGTTTGCAAGAAGCTAACAGTACCCTATACATCCTATGA  99

seq1  T-AGCTTCAAAGAGTCCACTGGCCCTTCTTAGGTTCAGG-CAC-ACAGC-  139
      | ||||||||||||||  ||||||||||||||||||||| ||| ||||| 
seq2  TAAGCTTCAAAGAGTCACCTGGCCCTTCTTAGGTTCAGGACACAACAGCT  149

seq1  TCTGAT-ATCG-ACCTTGAG-CCCAAGGAATGGGAGAAATAG-TTTCTTA  185
      |||||| |||| |||||||| ||||||||||||||||||||| |||||||
seq2  TCTGATAATCGAACCTTGAGCCCCAAGGAATGGGAGAAATAGTTTTCTTA  199

seq1  TGAA--GGAAAAGCCCCATCAAAGAGCATGCTCTGCTTTGAAGTCAGTAC  233
      ||||  | ||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAAAAAGCCCCATCAAAGAGCATGCTCTGCTTTGAAGTCAGTAC  249

seq1  ACCTGAAGTTGTTTCACAGTAATTGGGAGACAAACTAATTTCATAGCATC  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGTTGTTTCACAGTAATTGGGAGACAAACTAATTTCATAGCATC  299

seq1  AAAGAGAAATTGTAAATATCAGAC-AACATAGCTACTACAACAGTGGGTG  332
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAGAGAAATTGTAAATATCAGACAAACATAGCTACTACAACAGTGGGTG  349

seq1  CAGTCAGAGATTC-AAGACAACACCTTGGTGAAAG-AAAATGACCAATGG  380
      ||||||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  CAGTCAGAGATTCAAAGACAACACCTTGGTGAAAGAAAAATGACCAATGG  399

seq1  GAGGAGGAAAAGGAAGTGGATGGTAAAACCCCACCATTACATTTGATACT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGAAAAGGAAGTGGATGGTAAAACCCCACCATTACATTTGATACT  449

seq1  TCATAGAAACACTAACCATAGAAACAGGCAGAATTAGGAAGTTAATAATA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAAACACTAACCATAGAAACAGGCAGAATTAGGAAGTTAATAATA  499

seq1  GGAAGTTAGGGATTGTATAGGATGGGTTTTAATAACAAAATAGAGACATA  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTAGGGATTGTATAGGATGGGTTTTAATAACAAAATAGAGACATA  549

seq1  AAATACTTCATGGATGGTAGGTTATTAATATGCCTCAGAAATTAACACTC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTTCATGGATGGTAGGTTATTAATATGCCTCAGAAATTAACACTC  599

seq1  TACATGACGAAAGCAGAAATCAGCAGAGAATGGGAGCAAGCACTTGTACG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGACGAAAGCAGAAATCAGCAGAGAATGGGAGCAAGCACTTGTACG  649

seq1  TGAGAAGGAAGTGCACCCTGGCACATCCTAAAAAGCCCGATTCTCCCATC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGGAAGTGCACCCTGGCACATCCTAAAAAGCCCGATTCTCCCATC  699

seq1  CAATCGATTCACTGCTTCTTCTCTAGTTCTACATGGTCATACTTCACTTT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCGATTCACTGCTTCTTCTCTAGTTCTACATGGTCATACTTCACTTT  749

seq1  TTAAACCCATTTAGTCTACTTCATATTTACTCTTACTCATTTATTTTTGA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCCATTTAGTCTACTTCATATTTACTCTTACTCATTTATTTTTGA  799

seq1  GACAGGGTCCTATGTAGATTAGAGTGACCTCAAATTCACTATGTAACCAA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGTCCTATGTAGATTAGAGTGACCTCAAATTCACTATGTAACCAA  849

seq1  GAATGGCACTGGATTTCTGATCTGCCTGCCTCTACTTCCCCAGTGCTAGG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCACTGGATTTCTGATCTGCCTGCCTCTACTTCCCCAGTGCTAGG  899

seq1  GTTACATGCACATGACATTGTAACTTGTACTAGAGATAGAACACATGGAC  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATGCACATGACATTGTAACTTGTACTAGAGATAGAACACATGGAC  949

seq1  TCAGGTATGTTAGGCAAGCACTCTGCCCATTAAGTTACAGTGCAGTTAAT  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTATGTTAGGCAAGCACTCTGCCCATTAAGTTACAGTGCAGTTAAT  999

seq1  TATAAAATGAAGTAAAGCCTAGAGAAAGACTACTTGCACCGGCTAAGGAA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGAAGTAAAGCCTAGAGAAAGACTACTTGCACCGGCTAAGGAA  1049

seq1  TGGACGAGTTATTTCCAAATCAGTGCTACCCTTGAACAAAGGAAGTCTGG  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGAGTTATTTCCAAATCAGTGCTACCCTTGAACAAAGGAAGTCTGG  1099

seq1  GTATTTCACTGAGGAATTC  1099
      |||||||||||||||||||
seq2  GTATTTCACTGAGGAATTC  1118