BAC Information

Click to search

BAC

Clone NameB6Ng01-207E05
Chromosome13 (Build37)
Map Location 95,433,613 - 95,549,744
singlet/doubletdoublet
Overlap genenone
Upstream geneBhmt2, Dmgdh, Arsb, Cycs-ps3, Lhfpl2, Scamp1, LOC435378, ENSMUSG00000042857, Ap3b1
Downstream geneTbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z, F2rl1, F2r, Iqgap2, F2rl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207E05.bB6Ng01-207E05.g
ACCGA026466GA026467
length1,2141,159
definitionB6Ng01-207E05.b B6Ng01-207E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,548,537 - 95,549,744)(95,433,613 - 95,434,756)
sequence
gaattctatacctttctctgaaggctggtaggagaagactggttctcaca
tggttaggaggagggttttattgcccactcccacagtgacaaacacttcc
tctaacaagaccgcacctacttcaacaaggccatacctcctaatagtgcc
actctctgggccaagtgtattcaaaccaccatactggatcacaaagattc
catgatagagttttaagttttgatattcactcatttatgaaattatttcc
caacagtttattgtgcttgagggagaactactgaaggtccagagagttcc
ttttaggtaagaaacctgaagtgtagtaatgggtagtttttgctgcatct
ctttgagctctcagtgagtagtaaatatgcatccacccaggagctatccc
ggatgaaagacacacacacacattagctcatttttaacctgccttactgg
ctcaatggctgtgcttctctaagcctcccatggctagcacaccctttttt
cctcctagctcaacacttctaaatctcctccaatttagttgcctggttac
cttctgtgaagtccattggttttgctgcccaagatgctgtcaggctgctc
ttccatgggctgctctccctttctgtctatattttggaagatctcccctg
tagctctgactcttccatctccccctgcaccaccaccaccaccaccacca
ccaccccgcccaagtatcttgattctctttcttttctctcctagcttgcg
ggaccctgaaagtctcatttctttctttctgcccagccattgctactggc
atcttgattgattgatcaagaaccaattgggaacaagaaccttcagtgtt
agtgcttgcagattcccaattaaatcaaagcatcagaaccactcctccac
tgtgattgggaaactgtgaaatcttgcctgagttctgaagagtattttgc
caggggaaagaaagctcactgaaatgatattcctccaatatttaaggtat
ataaatatattgcttcttaattgaggagagaaatttaatttaacttctgc
acttttctatatccacattacctctgcttcataccttaatatacattatt
aaatcattactaatggtaaataattccttcctctaattaccataaggcct
ggaacatgtaatgaccgggggtgtgactgcaaattaaacgcaattaaatg
aaggtttttgagaa
gaattcttatcccaaaagcaaatgacaaaaacatcaaatgtagacctctg
gtctacacatacacacacgcttgcatgcacgtgcgcgcgcgcgcgcgcgc
acacacacacacacacacacacacatttgcacttgcacatctatgtgtac
acatgttcacacaggaagaaagagaaagaaagcaagagaaaggaagaaag
aaaggaattaagaaagagagagaaagagaaagagagaaagagagaaagag
agaaagggagaaaggaaggaaggaaggaagaaaaagaaagaaagaaagaa
agaaagaaagaaagaaagagagaaagagagaaagaaagaaagaaagaaag
agagaaagaactctgagattaacatgttaagtttaagtgcagacatggga
ttggagagatggtttagtggcaggagacatgcagcaaacagaatgcagga
gacatgcagcaaacagaatgcaggagacatgaagcagacagaagcaggaa
tctgtttttctcttgtccactgccaataaattgtcttcttctggaatgtc
caggacactttcagagcttctccaaagagaccatctgaccccttccttgt
ggaaaaacccaggctatagtgccatcatcctacaggtggccctggtcaca
tctactcaaaacatatttctcacaaatgaagaattagacatgatgcaaag
ctcagttaaggtatgacttgtgctatgactggggagatggatcagccaac
aaagtgctcgcagaggtgaggacccagtttggacctccagcacacagaaa
aggctaggtaggtatggtggtcagcatttaataccagcatcaggaagtga
gggaagtagaccccctgagcaaggtgggctagctagacttgctgcctcag
tgagctctgggctcagcaagacaggctcctatctcaacctaacaccatgt
aaagccaccaaaagagacaccttgctgtcaaccttctggcctctaaactc
acagcacaacataatgttgctcccatgcacaccacattaatatggtggaa
cctaacatataccacaattgcacacacccaaccattaacccatgcacgct
taagcacaatacacaacattcatgcaaaatgaatgacctttggagccacg
tccggatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_95548537_95549744
seq2: B6Ng01-207E05.b_46_1259 (reverse)

seq1  TTCTCAAAA--CCTCATTTA--TGTGATTAATTTGCAATCACACCC---G  43
      |||||||||  | |||||||  || | |||||||||| ||||||||   |
seq2  TTCTCAAAAACCTTCATTTAATTGCGTTTAATTTGCAGTCACACCCCCGG  50

seq1  ACA-TACATGTACAAGGAC-TATGGTAATAAGAGAAGGGAATTAATTA-C  90
       || ||||||| | ||| | ||||||||| |||| | ||||||| ||| |
seq2  TCATTACATGTTCCAGGCCTTATGGTAATTAGAGGAAGGAATTATTTACC  100

seq1  AATAATAATGATATAATAATGTAATTATTAA-GTATG-AGCAGA-GTAAT  137
      | || ||||||| ||||||||||  |||||| ||||| |||||| |||||
seq2  ATTAGTAATGATTTAATAATGTA--TATTAAGGTATGAAGCAGAGGTAAT  148

seq1  GTTGGAATAGAAAGTTGCAGAAGTTAAAATTAAATTTCTCTCCTCAATTA  187
      || |  |||||||  |||||||||| ||||||||||||||||||||||||
seq2  GTGGATATAGAAAAGTGCAGAAGTT-AAATTAAATTTCTCTCCTCAATTA  197

seq1  AGAAGCAATATATTTATATTACCTTAAAATATTGGAGGAATATTCATTTC  237
      |||||||||||||||||| |||||| |||||||||||||||| |||||||
seq2  AGAAGCAATATATTTATA-TACCTT-AAATATTGGAGGAATA-TCATTTC  244

seq1  AGTGAGCTTTCTTTCCCCTTGGCAAATTACTCTTCAGAACTCAGGCAAGA  287
      |||||||||||||||||| ||||||| |||||||||||||||||||||||
seq2  AGTGAGCTTTCTTTCCCC-TGGCAAAATACTCTTCAGAACTCAGGCAAGA  293

seq1  TTTCACAGTTTCCCAATCACAGTGGAGGAGTGGTTCTGATGCTTTGATTT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAGTTTCCCAATCACAGTGGAGGAGTGGTTCTGATGCTTTGATTT  343

seq1  AATTGGGAATCTGCAAGCACTAACACTGAAGGTTCTTGTTCCCAATTGGT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGAATCTGCAAGCACTAACACTGAAGGTTCTTGTTCCCAATTGGT  393

seq1  TCTTGATCAATCAATCAAGATGCCAGTAGCAATGGCTGGGCAGAAAGAAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATCAATCAATCAAGATGCCAGTAGCAATGGCTGGGCAGAAAGAAA  443

seq1  GAAATGAGACTTTCAGGGTCCCGCAAGCTAGGAGAGAAAAGAAAGAGAAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGACTTTCAGGGTCCCGCAAGCTAGGAGAGAAAAGAAAGAGAAT  493

seq1  CAAGATACTTGGGCGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGCAGGGG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATACTTGGGCGGGGTGGTGGTGGTGGTGGTGGTGGTGGTGCAGGGG  543

seq1  GAGATGGAAGAGTCAGAGCTACAGGGGAGATCTTCCAAAATATAGACAGA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGGAAGAGTCAGAGCTACAGGGGAGATCTTCCAAAATATAGACAGA  593

seq1  AAGGGAGAGCAGCCCATGGAAGAGCAGCCTGACAGCATCTTGGGCAGCAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAGAGCAGCCCATGGAAGAGCAGCCTGACAGCATCTTGGGCAGCAA  643

seq1  AACCAATGGACTTCACAGAAGGTAACCAGGCAACTAAATTGGAGGAGATT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATGGACTTCACAGAAGGTAACCAGGCAACTAAATTGGAGGAGATT  693

seq1  TAGAAGTGTTGAGCTAGGAGGAAAAAAGGGTGTGCTAGCCATGGGAGGCT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTGTTGAGCTAGGAGGAAAAAAGGGTGTGCTAGCCATGGGAGGCT  743

seq1  TAGAGAAGCACAGCCATTGAGCCAGTAAGGCAGGTTAAAAATGAGCTAAT  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAGCACAGCCATTGAGCCAGTAAGGCAGGTTAAAAATGAGCTAAT  793

seq1  GTGTGTGTGTGTCTTTCATCCGGGATAGCTCCTGGGTGGATGCATATTTA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTCTTTCATCCGGGATAGCTCCTGGGTGGATGCATATTTA  843

seq1  CTACTCACTGAGAGCTCAAAGAGATGCAGCAAAAACTACCCATTACTACA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTCACTGAGAGCTCAAAGAGATGCAGCAAAAACTACCCATTACTACA  893

seq1  CTTCAGGTTTCTTACCTAAAAGGAACTCTCTGGACCTTCAGTAGTTCTCC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGTTTCTTACCTAAAAGGAACTCTCTGGACCTTCAGTAGTTCTCC  943

seq1  CTCAAGCACAATAAACTGTTGGGAAATAATTTCATAAATGAGTGAATATC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCACAATAAACTGTTGGGAAATAATTTCATAAATGAGTGAATATC  993

seq1  AAAACTTAAAACTCTATCATGGAATCTTTGTGATCCAGTATGGTGGTTTG  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTAAAACTCTATCATGGAATCTTTGTGATCCAGTATGGTGGTTTG  1043

seq1  AATACACTTGGCCCAGAGAGTGGCACTATTAGGAGGTATGGCCTTGTTGA  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACTTGGCCCAGAGAGTGGCACTATTAGGAGGTATGGCCTTGTTGA  1093

seq1  AGTAGGTGCGGTCTTGTTAGAGGAAGTGTTTGTCACTGTGGGAGTGGGCA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGCGGTCTTGTTAGAGGAAGTGTTTGTCACTGTGGGAGTGGGCA  1143

seq1  ATAAAACCCTCCTCCTAACCATGTGAGAACCAGTCTTCTCCTACCAGCCT  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCCTCCTCCTAACCATGTGAGAACCAGTCTTCTCCTACCAGCCT  1193

seq1  TCAGAGAAAGGTATAGAATTC  1208
      |||||||||||||||||||||
seq2  TCAGAGAAAGGTATAGAATTC  1214

seq1: chr13_95433613_95434756
seq2: B6Ng01-207E05.g_61_1219

seq1  GAATTCTTATCCCAAAAGCAAATGACAAAAACATCAAATGTAGACCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCCCAAAAGCAAATGACAAAAACATCAAATGTAGACCTCTG  50

seq1  GTCTACACATACACACACGCTTGCATGCACGTGCGCGCGCGCGCGCGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACACATACACACACGCTTGCATGCACGTGCGCGCGCGCGCGCGCGC  100

seq1  ACACACACACACACACACACACACATTTGCACTTGCACATCTATGTGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACATTTGCACTTGCACATCTATGTGTAC  150

seq1  ACATGTTCACACAGGAAGAAAGAGAAAGAAAGCAAGAGAAAGGAAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTCACACAGGAAGAAAGAGAAAGAAAGCAAGAGAAAGGAAGAAAG  200

seq1  AAAGGAATTAAGAAAGAGAGAGAAAGAGAAAGAGAGAAAGAGAGAAAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAATTAAGAAAGAGAGAGAAAGAGAAAGAGAGAAAGAGAGAAAGAG  250

seq1  AGAAAGGGAGAAAGGAAGGAAGGAAGGAAGAAAAAGAAAGAAAGAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGAGAAAGGAAGGAAGGAAGGAAGAAAAAGAAAGAAAGAAAGAA  300

seq1  AGAAAGAAAGAAAGAAAGAGAGAAAGAGAGAAAGAAAGAAAGAAAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAGAGAAAGAGAGAAAGAAAGAAAGAAAGAAAG  350

seq1  AGAGAAAGAACTCTGAGATTAACATGTTAAGTTTAAGTGCAGACATGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAACTCTGAGATTAACATGTTAAGTTTAAGTGCAGACATGGGA  400

seq1  TTGGAGAGATGGTTTAGTGGCAGGAGACATGCAGCAAACAGAATGCAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAGATGGTTTAGTGGCAGGAGACATGCAGCAAACAGAATGCAGGA  450

seq1  GACATGCAGCAAACAGAATGCAGGAGACATGAAGCAGACAGAAGCAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCAGCAAACAGAATGCAGGAGACATGAAGCAGACAGAAGCAGGAA  500

seq1  TCTGTTTTTCTCTTGTCCACTGCCAATAAATTGTCTTCTTCTGGAATGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTTCTCTTGTCCACTGCCAATAAATTGTCTTCTTCTGGAATGTC  550

seq1  CAGGACACTTTCAGAGCTTCTCCAAAGAGACCATCTGACCCCTTCCTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACACTTTCAGAGCTTCTCCAAAGAGACCATCTGACCCCTTCCTTGT  600

seq1  GGAAAAACCCAGGCTATAGTGCCATCATCCTACAGGTGGCCCTGGTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAACCCAGGCTATAGTGCCATCATCCTACAGGTGGCCCTGGTCACA  650

seq1  TCTACTCAAAACATATTTCTCACAAATGAAGAATTAGACATGATGCAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCAAAACATATTTCTCACAAATGAAGAATTAGACATGATGCAAAG  700

seq1  CTCAGTTAAGGTATGACTTGTGCTATGACTGGGGAGATGGATCAGCCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTAAGGTATGACTTGTGCTATGACTGGGGAGATGGATCAGCCAAC  750

seq1  AAAGTGCTCGCAGAGGTGAGGACCCAGTTTGGACCTCCAGCACACAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCTCGCAGAGGTGAGGACCCAGTTTGGACCTCCAGCACACAGAAA  800

seq1  AGGCTAGGTAGGTATGGTGGTCAGCATTTAATACCAGCATCAGGAAGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGGTAGGTATGGTGGTCAGCATTTAATACCAGCATCAGGAAGTGA  850

seq1  GGGAAGTAGACCCCCTGAGCAAGGT-GGCTAGCTAGACTTGCTGCCTCAG  899
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGAAGTAGACCCCCTGAGCAAGGTGGGCTAGCTAGACTTGCTGCCTCAG  900

seq1  TGAGCTCTGGGCTCAGCAAGACAGGCTCCTATCTCAA-CTAACACCATGG  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||| 
seq2  TGAGCTCTGGGCTCAGCAAGACAGGCTCCTATCTCAACCTAACACCATGT  950

seq1  AAAGCCACCAAAGAGGACACC-TGCTGTCAA-CTTCTGGCCTCTAAACTC  996
      ||||||||||||   |||||| ||||||||| ||||||||||||||||||
seq2  AAAGCCACCAAAAGAGACACCTTGCTGTCAACCTTCTGGCCTCTAAACTC  1000

seq1  ACAGCAC-ACAT-ATG-TGCTCCCATGCACACCACA-TAATAT-GTGGAC  1041
      ||||||| |||| ||| ||||||||||||||||||| |||||| ||||| 
seq2  ACAGCACAACATAATGTTGCTCCCATGCACACCACATTAATATGGTGGAA  1050

seq1  ACT-ACATATA-CACATATGCACACA-CCACACATAAACACATGCACGC-  1087
       || ||||||| ||||  |||||||| |||  ||| ||| ||||||||| 
seq2  CCTAACATATACCACAATTGCACACACCCAACCATTAACCCATGCACGCT  1100

seq1  TAAACACACACACACACACATTCATGCAAAAATGATGAC---TTGAGCCA  1134
      ||| |||| | ||||| ||||||||||||||   |||||   | ||||||
seq2  TAAGCACA-ATACACA-ACATTCATGCAAAATGAATGACCTTTGGAGCCA  1148

seq1  CGT-CAGATGG  1144
      ||| | |||||
seq2  CGTCCGGATGG  1159