BAC Information

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BAC

Clone NameB6Ng01-208E03
Chromosome13 (Build37)
Map Location 96,252,753 - 96,399,520
singlet/doubletdoublet
Overlap geneF2rl1, F2r, Iqgap2
Upstream geneAp3b1, Tbca, Otp, Wdr41, Pde8b, Zbed3, Aggf1, Crhbp, S100z
Downstream geneF2rl2, Sv2c, LOC667582, 1200014M14Rik, 9330128J19Rik, Polk, Col4a3bp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208E03.bB6Ng01-208E03.g
ACCGA027186GA027187
length1,1621,126
definitionB6Ng01-208E03.b B6Ng01-208E03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,398,351 - 96,399,520)(96,252,753 - 96,253,892)
sequence
gaattcaaggtggaaggaccaacagaaatggtggcgcacacacagcccag
caggcacaccatgctctgcctttgcaaggaaccatgagcctcatgcataa
acctcctgtcttcctttgtctcaagagaagtcgtcctttggctgtggcct
tctctctgactccctcctccttccaggacctgacccacaacatctgattc
tataagctctgagaatacaccttttcatctcatgaagtttctctaaagac
tattacctaatgaacattgctgtcccaacagcggtatcagtcaatgtcca
aagatcacacctgctagttcctttgtaattaaaaaaaaaaaaaaagaaat
ctagctcagatcccagtagtggaagatgatgcagagtgtttggcagcctt
gggatcgtcacactagtctgctcactggtcctgagttgaggctctgttag
tttcttcttctttagtggtttacttgtggttgcacgtggctgactgttcc
tcttcaataggtttaagaatgttatgttcgatatcatagctactgaggac
atgggcatctttgacgtcagatccaaattcctcggtgttgagatggaaaa
ggtacaactcaatattcaggtgagctgggatgaaggccagcgtggatctc
tctgcactacacagtacctaacaaacagggctgcggtggcgcacgccttt
aatcccagcacttgggaggcagaggcaggcggatttctgagttcgaggcc
agcctggtctacagagtgagttccaggacagctaaagctacacagagaaa
ccctgtctcgaaaaaaacaaacaaaaaaacaaaaaaaaaccagggcttcg
aaagccctgagtttaattcctggaactcagatggtggaaggagagaactt
tcacatgttgtcctctgacctccacatgcatggacggacacacacacaca
cacacacacacacacacacacacaaattttttattgtagactgaaatgaa
aatcgtgtctgatataactggataataattttcttccatgcagttttttc
ccagtgctgaagctccaaggccaaagcttctcaacacaaactaagctctg
taccccaaattatacctgcagccctcctcattcagtaaagtcatttctcc
acggcggagcag
gaattctcttttgagtaccatgcttgaaagtgaaccaaacaagggaaaga
aggggctggagagatgagtgctggctgctcagtcctcaggaagggagctg
ggcttccagtacctaaccaagtgagtatccccacacatctgtgactccag
atctcaggtgtctaacaccctcctctgactcccgtgcttaaaggtagaca
cacacaccacaaacatacacacacacacacacacacacacacacatatac
atacatatacacaaacacacaccacaagcatatacacacagatacacaca
caccacaaacacatacacacatacatacaaacccacatacacacctcaca
aaatcttgtcagcatgagaaaaagctaacaaagtattgaattattctacc
taaggaagagaactggctttaagggcattgagcgtatggaggattagtac
tagaaaggctggtcactgctggccactgctggtcactgctgaccactgtt
tgtcactgctggtcactgctggccattgctggtcactactctgttgtcac
tggcacgatcagataaagaataacttttaaaatattaacagaagggctgg
agagatagcgcgacagtcaagagcactggctgctcttgcagaggaccaag
cttgggtcctagcactgacacggtgcctcatgctgtctataactcgagtt
ccaggctcattcttctggtctccaagggcagcaggcacacatggactcat
acaggcaaaaacattcctacacataaaataaaaacaaataaatctctaaa
cattgatatacacacatttttaaaaattaaaatttccccaagcattgcaa
acgtggctagaaagtgtctaaaaaattacctggtctcttatacaaatgcc
taacaaataaacacaaaagcctattaactggccctagtgttacccattgg
ctgcaggagtgaacaaggccttgatctggacccgaccagtcacactggct
gtgtagaaacaagcacacaacgtgtagacaggcaagtgcagtcaccgtgc
atatcgagcttcagctcgtgtcgtgtcagactagctacacactaaagcac
acccttctttgcagaatgctgaaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_96398351_96399520
seq2: B6Ng01-208E03.b_45_1206 (reverse)

seq1  CTGCTCTG-CGTGGAAGAAAATGACTTTAATGATAGAGAGAGGGCTGCAG  49
      |||||| | ||||||   ||||||||||| |||  ||| |||||||||||
seq2  CTGCTCCGCCGTGGA--GAAATGACTTTACTGAATGAG-GAGGGCTGCAG  47

seq1  TTATAATTTGGGGGTACAGAGC-TAGTTTGTGTGTGAGAGCTTTTGGCCT  98
       |||||||| |||||||||||| |||||||||| |||||   ||||||||
seq2  GTATAATTT-GGGGTACAGAGCTTAGTTTGTGT-TGAGAAGCTTTGGCCT  95

seq1  T-GAGCTTCAGCACTGGGAAAAAAAACTGCATGAAAGAAAATTATTATCC  147
      | ||||||||||||||||  ||||||||||||| ||||||||||||||||
seq2  TGGAGCTTCAGCACTGGG--AAAAAACTGCATGGAAGAAAATTATTATCC  143

seq1  AGTTAATATCAGACACGATTTTCATTTCAGTCTTACAATTAAAAAATTTT  197
      |||| ||||||||||||||||||||||||||| ||||||  ||||| |||
seq2  AGTT-ATATCAGACACGATTTTCATTTCAGTC-TACAAT--AAAAAATTT  189

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCGTCCATGCATGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCGTCCATGCATGT  239

seq1  GGAGGTCAGAGGACAACATGTGAAAGTTCTCTCCTTCCACCATCTGAGTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCAGAGGACAACATGTGAAAGTTCTCTCCTTCCACCATCTGAGTT  289

seq1  CCAGGAATTAAACTCAGGGCTTTCGAAGCCCTGGTTTTTTTTTGTTTTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAATTAAACTCAGGGCTTTCGAAGCCCTGGTTTTTTTTTGTTTTTT  339

seq1  TGTTTGTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCCTTAGCTGTCCTG  397
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTTGTTTTTTTCGAGACAGGGTTTCTCTGTGTAGCTTTAGCTGTCCTG  389

seq1  GAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  439

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCGCAGCCCTGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCGCAGCCCTGTT  489

seq1  TGTTAGGTACTGTGTAGTGCAGAGAGATCCACGCTGGCCTTCATCCCAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGGTACTGTGTAGTGCAGAGAGATCCACGCTGGCCTTCATCCCAGC  539

seq1  TCACCTGAATATTGAGTTGTACCTTTTCCATCTCAACACCGAGGAATTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGAATATTGAGTTGTACCTTTTCCATCTCAACACCGAGGAATTTG  589

seq1  GATCTGACGTCAAAGATGCCCATGTCCTCAGTAGCTATGATATCGAACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGACGTCAAAGATGCCCATGTCCTCAGTAGCTATGATATCGAACAT  639

seq1  AACATTCTTAAACCTATTGAAGAGGAACAGTCAGCCACGTGCAACCACAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTTAAACCTATTGAAGAGGAACAGTCAGCCACGTGCAACCACAA  689

seq1  GTAAACCACTAAAGAAGAAGAAACTAACAGAGCCTCAACTCAGGACCAGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACCACTAAAGAAGAAGAAACTAACAGAGCCTCAACTCAGGACCAGT  739

seq1  GAGCAGACTAGTGTGACGATCCCAAGGCTGCCAAACACTCTGCATCATCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGACTAGTGTGACGATCCCAAGGCTGCCAAACACTCTGCATCATCT  789

seq1  TCCACTACTGGGATCTGAGCTAGATTTCTTTTTTTTTTTTTTTAATTACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTACTGGGATCTGAGCTAGATTTCTTTTTTTTTTTTTTTAATTACA  839

seq1  AAGGAACTAGCAGGTGTGATCTTTGGACATTGACTGATACCGCTGTTGGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACTAGCAGGTGTGATCTTTGGACATTGACTGATACCGCTGTTGGG  889

seq1  ACAGCAATGTTCATTAGGTAATAGTCTTTAGAGAAACTTCATGAGATGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAATGTTCATTAGGTAATAGTCTTTAGAGAAACTTCATGAGATGAA  939

seq1  AAGGTGTATTCTCAGAGCTTATAGAATCAGATGTTGTGGGTCAGGTCCTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGTATTCTCAGAGCTTATAGAATCAGATGTTGTGGGTCAGGTCCTG  989

seq1  GAAGGAGGAGGGAGTCAGAGAGAAGGCCACAGCCAAAGGACGACTTCTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGGAGGGAGTCAGAGAGAAGGCCACAGCCAAAGGACGACTTCTCT  1039

seq1  TGAGACAAAGGAAGACAGGAGGTTTATGCATGAGGCTCATGGTTCCTTGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACAAAGGAAGACAGGAGGTTTATGCATGAGGCTCATGGTTCCTTGC  1089

seq1  AAAGGCAGAGCATGGTGTGCCTGCTGGGCTGTGTGTGCGCCACCATTTCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGAGCATGGTGTGCCTGCTGGGCTGTGTGTGCGCCACCATTTCT  1139

seq1  GTTGGTCCTTCCACCTTGAATTC  1170
      |||||||||||||||||||||||
seq2  GTTGGTCCTTCCACCTTGAATTC  1162

seq1: chr13_96252753_96253892
seq2: B6Ng01-208E03.g_65_1190

seq1  GAATTCTCTTTTGAGTACCATGCTTGAAAGTGAACCAAACAAGGGAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTGAGTACCATGCTTGAAAGTGAACCAAACAAGGGAAAGA  50

seq1  AGGGGCTGGAGAGATGAGTGCTGGCTGCTCAGTCCTCAGGAAGGGAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCTGGAGAGATGAGTGCTGGCTGCTCAGTCCTCAGGAAGGGAGCTG  100

seq1  GGCTTCCAGTACCTAACCAAGTGAGTATCCCCACACATCTGTGACTCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCAGTACCTAACCAAGTGAGTATCCCCACACATCTGTGACTCCAG  150

seq1  ATCTCAGGTGTCTAACACCCTCCTCTGACTCCCGTGCTTAAAGGTAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGGTGTCTAACACCCTCCTCTGACTCCCGTGCTTAAAGGTAGACA  200

seq1  CACACACCACAAACATACACACACACACACACACACACACACACATATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACCACAAACATACACACACACACACACACACACACACACATATAC  250

seq1  ATACATATACACAAACACACACCACAAGCATATACACACAGATACACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATACACAAACACACACCACAAGCATATACACACAGATACACACA  300

seq1  CACCACAAACACATACACACATACATACAAACCCACATACACACCTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACAAACACATACACACATACATACAAACCCACATACACACCTCACA  350

seq1  AAATCTTGTCAGCATGAGAAAAAGCTAACAAAGTATTGAATTATTCTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTTGTCAGCATGAGAAAAAGCTAACAAAGTATTGAATTATTCTACC  400

seq1  TAAGGAAGAGAACTGGCTTTAAGGGCATTGAGCGTATGGAGGATTAGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGAGAACTGGCTTTAAGGGCATTGAGCGTATGGAGGATTAGTAC  450

seq1  TAGAAAGGCTGGTCACTGCTGGCCACTGCTGGTCACTGCTGACCACTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGCTGGTCACTGCTGGCCACTGCTGGTCACTGCTGACCACTGTT  500

seq1  TGTCACTGCTGGTCACTGCTGGCCATTGCTGGTCACTACTCTGTTGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGCTGGTCACTGCTGGCCATTGCTGGTCACTACTCTGTTGTCAC  550

seq1  TGGCACGATCAGATAAAGAATAACTTTTAAAATATTAACAGAAGGGCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACGATCAGATAAAGAATAACTTTTAAAATATTAACAGAAGGGCTGG  600

seq1  AGAGATAGCGCGACAGTCAAGAGCACTGGCTGCTCTTGCAGAGGACCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGCGCGACAGTCAAGAGCACTGGCTGCTCTTGCAGAGGACCAAG  650

seq1  CTTGGGTCCTAGCACTGACACGGTGCCTCATGCTGTCTATAACTCGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTCCTAGCACTGACACGGTGCCTCATGCTGTCTATAACTCGAGTT  700

seq1  CCAGGCTCATTCTTCTGGTCTCCAAGGGCAGCAGGCACACATGGACTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCTCATTCTTCTGGTCTCCAAGGGCAGCAGGCACACATGGACTCAT  750

seq1  ACAGGCAAAAACATTCCTACACATAAAATAAAAACAAATAAATCTCTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAAAACATTCCTACACATAAAATAAAAACAAATAAATCTCTAAA  800

seq1  CATTGATATACACACATTTTTAAAAATTAAAATTTCCCCAAGCATTGCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATATACACACATTTTTAAAAATTAAAATTTCCCCAAGCATTGCAA  850

seq1  ACGTGGCTAGAAAGTGTCTAAAAAATTACCTGGTCTCTTATACAAATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGGCTAGAAAGTGTCTAAAAAATTACCTGGTCTCTTATACAAATGCC  900

seq1  TAACAAATAAAACACAAAAGCCTATTAACTGG-CCTAGTG-TACCCATTG  948
      |||||||| ||||||||||||||||||||||| ||||||| |||||||||
seq2  TAACAAAT-AAACACAAAAGCCTATTAACTGGCCCTAGTGTTACCCATTG  949

seq1  GCTGCAGGGAGTGAACAA-GCCTTGATCTGGACCCCGACCAGTCACACTG  997
      |||||| ||||||||||| ||||||||||||| |||||||||||||||||
seq2  GCTGCA-GGAGTGAACAAGGCCTTGATCTGGA-CCCGACCAGTCACACTG  997

seq1  GCTGTGTAGAAACAAGCACACAACGTGTAGACAGGCAAGTGGCAGTCACC  1047
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  GCTGTGTAGAAACAAGCACACAACGTGTAGACAGGCAAGT-GCAGTCA-C  1045

seq1  CGTGCCATATCCGAGCCTCAGCTCGTGTCCGTTGTCAGGACTAGCTACCA  1097
      |||| ||||| ||||| ||||||||||||   ||||| ||||||||| ||
seq2  CGTG-CATAT-CGAGCTTCAGCTCGTGTC--GTGTCA-GACTAGCTA-CA  1089

seq1  CCAACTAAAAGCACACCCCTCCTTTGGCCAGAATGCTGAAACA  1140
      |  ||| |||||||| |||| |||||  |||||||||||||||
seq2  C--ACT-AAAGCACA-CCCTTCTTTG--CAGAATGCTGAAACA  1126