BAC Information

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BAC

Clone NameB6Ng01-208E24
Chromosome13 (Build37)
Map Location 62,101,284 - 62,246,710
singlet/doubletdoublet
Overlap geneEG624180, LOC100041420, LOC665444, EG630579
Upstream geneCtsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250
Downstream geneEG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437, LOC100041979, LOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208E24.bB6Ng01-208E24.g
ACCGA027228GA027229
length563486
definitionB6Ng01-208E24.b B6Ng01-208E24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,101,284 - 62,101,852)(62,246,216 - 62,246,710)
sequence
tctgataagcactgtaccctatactttaagtgggatatttgggttgttgg
tgtctaacctcttgagttctttagaaatttgaatattatccctctgccag
atgaaggattattgaagattatgatccagtgtgtaggctgctgtttgatc
ctactgacggtgtcctttgccttacagaagttccgctgttttgttttttg
ttttatgttttttaaagatatatttatttattttatgtatatgagtacac
tatagttatcttcagacacaccagaagagggcatcagatcccattacaga
tggttgtgagccaccatgtggttgctgggaattgtactgaggacctctgg
aaaagcagtcagtgctcttaaccactgagccatctctccagcccaaaaat
gtatgtaggatttgacaattcatgctcattcatatccccattagttatcc
atttggcacttcctcttgaattactgacttctgatagaattatctagaga
tgctagatattgcaagagcaatgagatgtattattttgttttgtgttgta
tgtgtgtgatgtg
caaagatggagccttaaggctagaaaaataaaaagaccttgctagccact
atgtgggaagaagagaaagagaaagaactaccatcttcaatatcctttat
atatataggctcacagtagaagttctggccaagattaatttttttttctt
ctcaacctaaacctccagattaaagaagggttttcccaagttaaatggtg
aaaataataaaaacccctcacagtgtccatctgtttggttttaggtaact
aaactcctgtaactacagtcatttgaaataattgtattggtggctacaac
agttgacaggaagttcttatccagattctttctgttttcttttgttttgt
ttttttcaagacagggtttctctgtatagccctggctgtgctggaactca
ccctgtagatcatgctgtcctcagactcagaaatccaactgcctctgcct
cccgagtgctgggactattggtgtgggcctccatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62101284_62101852
seq2: B6Ng01-208E24.b_46_614

seq1  GAATTCTCTGATAAGCACTGTACCCTATACTTTAAGTGGGATATTTGGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATAAGCACTGTACCCTATACTTTAAGTGGGATATTTGGGT  50

seq1  TGTTGGTGTCTAACCTCTTGAGTTCTTTAGAAATTTGAATATTATCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGTCTAACCTCTTGAGTTCTTTAGAAATTTGAATATTATCCCTC  100

seq1  TGCCAGATGAAGGATTATTGAAGATTATGATCCAGTGTGTAGGCTGCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGATGAAGGATTATTGAAGATTATGATCCAGTGTGTAGGCTGCTGT  150

seq1  TTGATCCTACTGACGGTGTCCTTTGCCTTACAGAAGTTCCGCTGTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCCTACTGACGGTGTCCTTTGCCTTACAGAAGTTCCGCTGTTTTGT  200

seq1  TTTTTGTTTTATGTTTTTTAAAGATATATTTATTTATTTTATGTATATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTATGTTTTTTAAAGATATATTTATTTATTTTATGTATATGA  250

seq1  GTACACTATAGTTATCTTCAGACACACCAGAAGAGGGCATCAGATCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTATAGTTATCTTCAGACACACCAGAAGAGGGCATCAGATCCCAT  300

seq1  TACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGTACTGAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGTACTGAGGAC  350

seq1  CTCTGGAAAAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAAAAGCAGTCAGTGCTCTTAACCACTGAGCCATCTCTCCAGCCC  400

seq1  AAAAATGTATGTAGGATTTGACAATTCATGCTCATTCATATCCCCATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGTATGTAGGATTTGACAATTCATGCTCATTCATATCCCCATTAG  450

seq1  TTATCCATTTGGCACTTCCTCTTGAATTACTGACTTCTGATAGAATTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCATTTGGCACTTCCTCTTGAATTACTGACTTCTGATAGAATTATC  500

seq1  TAGAGATGCTAGATATTGCAAGAGCAATGAGATGTATTATTTTGTTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATGCTAGATATTGCAAGAGCAATGAGATGTATTATTTTGTTTTGT  550

seq1  GTTGTATGTGTGTGATGTG  569
      |||||||||||||||||||
seq2  GTTGTATGTGTGTGATGTG  569

seq1: chr13_62246216_62246710
seq2: B6Ng01-208E24.g_64_555 (reverse)

seq1  TGATGGTGGTGGCCCACACCTATAGTCCCAGCACTCGGGAGGCAGAGGCA  50
         || ||| |||||||||| |||||||||||||||||||||||||||||
seq2  ---TGATGGAGGCCCACACCAATAGTCCCAGCACTCGGGAGGCAGAGGCA  47

seq1  GTTGGATTTCTGAGTCTGAGGACAGCCTGATCTACAGGGTGAGTTCCAGC  100
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTTGGATTTCTGAGTCTGAGGACAGCATGATCTACAGGGTGAGTTCCAGC  97

seq1  ACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAAAACAAAACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAAAAACAAAACAAAA  147

seq1  GAAAACAGAAAGAATCTGGATAAGAACTTCCTGTCAACTGTTGTAGCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAGAAAGAATCTGGATAAGAACTTCCTGTCAACTGTTGTAGCCAC  197

seq1  CAATACAATTATTTCAAATGACTGTAGTTACAGGAGTTTAGTTACCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACAATTATTTCAAATGACTGTAGTTACAGGAGTTTAGTTACCTAAA  247

seq1  ACCAAACAGATGGACACTGTGAGGGGTTTTTATTATTTTCACCATTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACAGATGGACACTGTGAGGGGTTTTTATTATTTTCACCATTTAAC  297

seq1  TTGGGAAAACCCTTCTTTAATCTGGAGGTTTAGGTTGAGAAGAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAAACCCTTCTTTAATCTGGAGGTTTAGGTTGAGAAGAAAAAAAA  347

seq1  ATTAATCTTGGCCAGAACTTCTACTGTGAGCCTATATATATAAAGGATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCTTGGCCAGAACTTCTACTGTGAGCCTATATATATAAAGGATAT  397

seq1  TGAAGATGGTAGTTCTTTCTCTTTCTCTTCTTCCCACATAGTGGCTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGGTAGTTCTTTCTCTTTCTCTTCTTCCCACATAGTGGCTAGCA  447

seq1  AGGTCTTTTTATTTTTCTAGCCTTAAGGCTCCATCTTTGGAATTC  495
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTTTATTTTTCTAGCCTTAAGGCTCCATCTTTGGAATTC  492