BAC Information

Click to search

BAC

Clone NameB6Ng01-209H23
Chromosome13 (Build37)
Map Location 5,071,787 - 5,072,863
singlet/doubletsinglet
Overlap genenone
Upstream geneAkr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209H23.bB6Ng01-209H23.g
ACCGA028098GA028099
length1,2081,068
definitionB6Ng01-209H23.b B6Ng01-209H23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacatgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccttgagat
tctacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtagagaaagaggaacactcctcctttgttggtg
ggattgtaagcttgtacaaccactctggaaatcagtctggtggctcctca
gaaaattggacataatactatcggaggatcccgcaatacctctcctgggc
atatgtccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagaa
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacccaatcacaaa
ggaattcacacaacatatactcactgataagtggatattagcccagaaac
ttagcatacacaagatataagatttgctaaacgcatgaaactcaagaaga
acaaagaacaaagtgtggacactttgccccttcttagaattgggaacaaa
acacccatggaaggagttacagagacaaaatttggagctgtgacaaaagt
atggaccatcttgtgattgccatatccagggatccatcccataatcagct
tccaaacgctgacaccattgcatacactagcaagattatgctgaaagcaa
ccagatatagctgtctcttgtgagactatgccgggccctagcaaacacag
aagtggatgctcacaaccagctattggatggatcacagtgccctcaatgg
agagctagagatagtacccaaggagctgggggtatctgcaaccctaatag
gtgcaacaaaaaaaatgaactaacagtaacccccctccccccccagaagc
tcgtgtcctctagctgcatgtgtatcaagaaaaattggtctagtaaggcc
atcaggtgaagaagagaaccatgtttggcaacttatatatgtcctcagat
ccggtattgcaagtccagaagttgggaagtgggaagattctctgaatcgg
ttaagggg
gaattcagtgacttataaatctattttggtatgtagtggttcaatgtcat
gacaatggtctgtttttgttcccctttattaatgacattttgatcaaacc
tgaaataacccaatacttctagaagttgcatgtcaatgcttacttaagga
aatactttaaaataaattcaagaaaaaaaaaatttttccaatttgttaaa
tgctaaaaagtaaaggttcacatgagacatgtagagtgttgaatttagaa
tgaggagccaagaaaatctaaaaggaattctcttctctaaattatgtagt
tatcttttatttattcactctaacttgtcactttgctgagactgttttga
gggaaattagcagcagatgaagttggatttcagagcttaagacgacaaag
taaacaggtgctaatatagaaaattgtttccatctgtgattgctagtatg
ctttagaaatgcttttaactcttctgctcagagctaccagtgactgggtt
attaggaaagatgtagctgctcactatgggaagacttgattgggtccatt
atccattatgtcaaaggtctactaataaagaacctgctttctaatgcact
ggataagaatagtccctacaaacactttaaatgtattttctaattgaaag
catggtgtgcacttcagaaaaacggctcatcattgagcacagggtcccca
atggaggagttacagaaaggactaaaggagctgggtatggtactgagatc
tggaatgaattacagagattgttttgatgacacttgctggacctttagga
aactcagttgttcagctgcactgtcaaaactcaagaaaagtctgatatct
cttgacacagtgacaatgatgaactataacatatttatccatatacatac
accctttatcataacttgtctgtctctcataatcaacttatatgtatatc
atataagtgtgtgtatatgtgtgtgtgtaagctttaatgcagattttact
ttctgatgagatgaggagagtagaaacagagaactggtttactatgagga
tctaactacagaatctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_5071787_5072863
seq2: B6Ng01-209H23.g_65_1132

seq1  GAATTCAGTGACTTATAAATCTATTTTGGTATGTAGTGGTTCAATGTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGACTTATAAATCTATTTTGGTATGTAGTGGTTCAATGTCAT  50

seq1  GACAATGGTCTGTTTTTGTTCCCCTTTATTAATGACATTTTGATCAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATGGTCTGTTTTTGTTCCCCTTTATTAATGACATTTTGATCAAACC  100

seq1  TGAAATAACCCAATACTTCTAGAAGTTGCATGTCAATGCTTACTTAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATAACCCAATACTTCTAGAAGTTGCATGTCAATGCTTACTTAAGGA  150

seq1  AATACTTTAAAATAAATTCAAGAAAAAAAAAATTTTTCCAATTTGTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTAAAATAAATTCAAGAAAAAAAAAATTTTTCCAATTTGTTAAA  200

seq1  TGCTAAAAAGTAAAGGTTCACATGAGACATGTAGAGTGTTGAATTTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAAAAGTAAAGGTTCACATGAGACATGTAGAGTGTTGAATTTAGAA  250

seq1  TGAGGAGCCAAGAAAATCTAAAAGGAATTCTCTTCTCTAAATTATGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGCCAAGAAAATCTAAAAGGAATTCTCTTCTCTAAATTATGTAGT  300

seq1  TATCTTTTATTTATTCACTCTAACTTGTCACTTTGCTGAGACTGTTTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTATTTATTCACTCTAACTTGTCACTTTGCTGAGACTGTTTTGA  350

seq1  GGGAAATTAGCAGCAGATGAAGTTGGATTTCAGAGCTTAAGACGACAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATTAGCAGCAGATGAAGTTGGATTTCAGAGCTTAAGACGACAAAG  400

seq1  TAAACAGGTGCTAATATAGAAAATTGTTTCCATCTGTGATTGCTAGTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGGTGCTAATATAGAAAATTGTTTCCATCTGTGATTGCTAGTATG  450

seq1  CTTTAGAAATGCTTTTAACTCTTCTGCTCAGAGCTACCAGTGACTGGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAATGCTTTTAACTCTTCTGCTCAGAGCTACCAGTGACTGGGTT  500

seq1  ATTAGGAAAGATGTAGCTGCTCACTATGGGAAGACTTGATTGGGTCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGAAAGATGTAGCTGCTCACTATGGGAAGACTTGATTGGGTCCATT  550

seq1  ATCCATTATGTCAAAGGTCTACTAATAAAGAACCTGCTTTCTAATGCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTATGTCAAAGGTCTACTAATAAAGAACCTGCTTTCTAATGCACT  600

seq1  GGATAAGAATAGTCCCTACAAACACTTTAAATGTATTTTCTAATTGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGAATAGTCCCTACAAACACTTTAAATGTATTTTCTAATTGAAAG  650

seq1  CATGGTGTGCACTTCAGAAAAACGGCTCATCATTGAGCACAGGGTCCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTGCACTTCAGAAAAACGGCTCATCATTGAGCACAGGGTCCCCA  700

seq1  ATGGAGGAGTTACAGAAAGGACTAAAGGAGCTGGGTATGGTACTGAGATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGTTACAGAAAGGACTAAAGGAGCTGGGTATGGTACTGAGATC  750

seq1  TGGAATGAATTACAGAGATTGTTTTGATGACACTTGCTGGACCTTTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATGAATTACAGAGATTGTTTTGATGACACTTGCTGGACCTTTAGGA  800

seq1  AACTCAGTTGTTCAGCTGCACTGTCAAAACTCAAGAAAAGTCTGATATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTTGTTCAGCTGCACTGTCAAAACTCAAGAAAAGTCTGATATCT  850

seq1  CTTGACACAGTGACAATGATGAACTATAACATATTTATCCATATACATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACACAGTGACAATGATGAACTATAACATATTTATCCATATACATAC  900

seq1  ACCCTTTATTCATAACTTGTCTGTCTCTCATTAATCAACTTATATGTATA  950
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  ACCCTTTA-TCATAACTTGTCTGTCTCTCA-TAATCAACTTATATGTATA  948

seq1  TCATATAAGTTGTGTGTATATGTGTGTGTGTAAGCTTTAATGCAAGATTT  1000
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  TCATATAAG-TGTGTGTATATGTGTGTGTGTAAGCTTTAATGC-AGATTT  996

seq1  TTATTTCTGATGAGATGAAGAAGAGTAGAAACAGAGACTTGGTTTTTACT  1050
      |  |||||||||||||| || ||||||||||||||||  |||  ||||||
seq2  TACTTTCTGATGAGATG-AGGAGAGTAGAAACAGAGAACTGG--TTTACT  1043

seq1  ATGAGAATCTTAAACTACAGAATCTGA  1077
      ||||| ||||  |||||||||||||||
seq2  ATGAGGATCT--AACTACAGAATCTGA  1068