BAC Information

Click to search

BAC

Clone NameB6Ng01-211D24
Chromosome13 (Build37)
Map Location 4,974,319 - 4,975,481
singlet/doubletsinglet
Overlap genenone
Upstream geneAkr1c14, Akr1c18, LOC100039262, Akr1c13, Akr1c19, Akr1c12, Akr1c6, Akr1c20, Akr1c21, Akr1e1, EG432721, EG432723
Downstream gene1700016G22Rik, Klf6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211D24.bB6Ng01-211D24.g
ACCGA029371GA029372
length1,1701,160
definitionB6Ng01-211D24.b B6Ng01-211D24.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggatatgaaataatttttcaacttgtccagatgagcctgtcca
gccaaattctatcatcagttgtgggagatggtagaaacttggccttgaat
gtcaatctgtcttcagacacagttttaatttcagttcctaccaacgcacc
agtagcttgacagtgaattatgactttccgctctctgtgctggacatgtc
actcacagatagtctgataacatgaccatattctgaagaaatcattttag
ataaatgttattgctctaataaaaaaatctaaacattccctttcttgtga
gtaagtaaaaattgtgtacataaaataagccacataaaaacaagataata
actacagcctaaacatttatgtccttgaaaatcatgtactgaatactaaa
atatgcaattcttatcaatgcagaaaacaactgtgatcacaaagaagtgt
cattttggtagtaatttcctatacagagcaacacaagtgccattgtccat
ttaattcagaaagtgaggataggtaataagtaaggaaaatttcaaataaa
cagtgtatcataattccttgagtcaggaaacaaaatcagttaaatacact
gcacagcatagatgaaaatcttgaaaacagaatcacaaaacaggaattat
tttcaaggagaaaattaaattaactatttctaataacttttcactatgat
ataaataaatggctggcattatttttaaacagtaaatttgtagtgaataa
aatccataagtccaattaagttgtgctaatgaatatctggtatgacctct
gaggaagggaaattaagtaaggttctcattgtgtttgtattctagactct
gtctaaatgaacatcatcagcacagtgagtttaaagaagaaagtagagca
tatttgtggaaaatttaacatatattccttccacattacctatacgaaca
atgcaggcatattttcttggtggtcaagacaaagtagacaaagtttactg
ggtagggttagaagctacaaggaaattggataaaaaccatttcatgggcc
aattggattctgagcagaagtgtgcttctgagagagagatcacagcaaaa
ctgcctgaagggtgaaagcacagccacaggaacaatgtctaagccagttc
cccagggttccagaaatgag
gaattcacgcagttgaacccttctcaacagtctgttttacgggaacactt
cattaccaccattccccagctgaagagttctgaatccaggacggatcctt
ctcaacagtctgttttacgggaacctttatgaccgtgaccctcagttctg
gttccggaatgagggatcttccttgcgccggtgatggtaaccgtcccagg
ttttctcgtcccgggatttctcgttccaggtcttctcgtcccgggtttcc
ttgtcccaggtcttctcatcccgggttttctcgtcccaggtcttctcgtc
ccaggtctcagcaccaactcttacacgtgttctctcgaccggccaggaaa
gacacaacaaaccggaatcttctgtggcaaaagctttattgcttacatct
tcaggagccagagagcaagagagcaagagagcaagagagcaagagagcaa
gagagagcaagaaagcaagaaaaagaacaagaacaagaaagcaagagcaa
gaagaagaacaagagcaagaaaacaagagcaagagagagcaagagtgcaa
gagccagagcaagagcaagagagagaaaaaacaagagcaagaaaaagaac
aagaacaagaaagcaagagagagaatgataaaaccccgtcccttttaagg
agaattatcctccgcctaggacgtattactccctgattggctgcagccca
tcggcccagttgtcatcacgagaaaggcagaacacatggcgggaaaactg
cccctgcacgtgtgcagattatgtttaccacttagaacacagctgtcagt
gccatcttataatggcaaatgtgagggcggcttcccacatgtgtgtaatg
tgctgaaggatacctgggctgggtttattacctggacactatgaataatg
aagctataatcatatgctcatgggcatattggcttagcatatcttttttg
ggtatatatcccagagtagcttatctggctcatttgacagtgggttctgg
ttttttgtttgtttgtttgtttgtttgttgtttttaagaaaaaccaccat
tttcatagtggcctgtaataaagtttatattttttcagcctgtgaatgta
tacgttcattccccagtattctatttagcattctggctctggttataact
ctgatgagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_4974319_4975481
seq2: B6Ng01-211D24.b_43_1212 (reverse)

seq1  CTCA-TTCTGGGACCCTGGGG-ACTGCTTTAAGCCAATTGT--CTGTTGC  46
      |||| |||||| ||||||||| ||||  |||  |  |||||  |||| ||
seq2  CTCATTTCTGGAACCCTGGGGAACTGGCTTAGAC--ATTGTTCCTGTGGC  48

seq1  TGTGCTTTCCACCCTTCAGGCAG-TTTGCTGTGTATCTCTCTTCTCAGAA  95
      |||||||| |||||||||||||| ||||||||| ||||||| ||||||||
seq2  TGTGCTTT-CACCCTTCAGGCAGTTTTGCTGTG-ATCTCTC-TCTCAGAA  95

seq1  GCACACTTCTGCTCAGAATCAAATTGG-CCATGAATGGTTTTTTATCCAA  144
      |||||||||||||||||||| |||||| |||||||  | |||||||||||
seq2  GCACACTTCTGCTCAGAATCCAATTGGCCCATGAAATGGTTTTTATCCAA  145

seq1  TTTCCTTGTAGCTTCTAA-CCTA-CCAGT-AACTTTGTCTACTTTGTCTT  191
      |||||||||||||||||| |||| ||||| ||||||||||||||||||||
seq2  TTTCCTTGTAGCTTCTAACCCTACCCAGTAAACTTTGTCTACTTTGTCTT  195

seq1  GACCA-CAAG-AAATATGCCTGCATTGTTCGTATAGGTAATGTGG-AGGA  238
      ||||| |||| |||||||||||||||||||||||||||||||||| ||||
seq2  GACCACCAAGAAAATATGCCTGCATTGTTCGTATAGGTAATGTGGAAGGA  245

seq1  ATATATGTTAAATTTTCCACAAATATGCTCTACTTTCTTCTTTAAACTCA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTTAAATTTTCCACAAATATGCTCTACTTTCTTCTTTAAACTCA  295

seq1  CTGTGCTGATGATGTTCATTTAGACAGAGTCTAGAATACAAACACAATGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGATGATGTTCATTTAGACAGAGTCTAGAATACAAACACAATGA  345

seq1  GAACCTTACTTAATTTCCCTTCCTCAGAGGTCATACCAGATATTCATTAG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTACTTAATTTCCCTTCCTCAGAGGTCATACCAGATATTCATTAG  395

seq1  CACAACTTAATTGGACTTATGGATTTTATTCACTACAAATTTACTGTTTA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTTAATTGGACTTATGGATTTTATTCACTACAAATTTACTGTTTA  445

seq1  AAAATAATGCCAGCCATTTATTTATATCATAGTGAAAAGTTATTAGAAAT  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATGCCAGCCATTTATTTATATCATAGTGAAAAGTTATTAGAAAT  495

seq1  AGTTAATTTAATTTTCTCCTTGAAAATAATTCCTGTTTTGTGATTCTGTT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATTTAATTTTCTCCTTGAAAATAATTCCTGTTTTGTGATTCTGTT  545

seq1  TTCAAGATTTTCATCTATGCTGTGCAGTGTATTTAACTGATTTTGTTTCC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGATTTTCATCTATGCTGTGCAGTGTATTTAACTGATTTTGTTTCC  595

seq1  TGACTCAAGGAATTATGATACACTGTTTATTTGAAATTTTCCTTACTTAT  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAAGGAATTATGATACACTGTTTATTTGAAATTTTCCTTACTTAT  645

seq1  TACCTATCCTCACTTTCTGAATTAAATGGACAATGGCACTTGTGTTGCTC  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTATCCTCACTTTCTGAATTAAATGGACAATGGCACTTGTGTTGCTC  695

seq1  TGTATAGGAAATTACTACCAAAATGACACTTCTTTGTGATCACAGTTGTT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGGAAATTACTACCAAAATGACACTTCTTTGTGATCACAGTTGTT  745

seq1  TTCTGCATTGATAAGAATTGCATATTTTAGTATTCAGTACATGATTTTCA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATTGATAAGAATTGCATATTTTAGTATTCAGTACATGATTTTCA  795

seq1  AGGACATAAATGTTTAGGCTGTAGTTATTATCTTGTTTTTATGTGGCTTA  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATAAATGTTTAGGCTGTAGTTATTATCTTGTTTTTATGTGGCTTA  845

seq1  TTTTATGTACACAATTTTTACTTACTCACAAGAAAGGGAATGTTTAGATT  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTACACAATTTTTACTTACTCACAAGAAAGGGAATGTTTAGATT  895

seq1  TTTTTATTAGAGCAATAACATTTATCTAAAATGATTTCTTCAGAATATGG  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTAGAGCAATAACATTTATCTAAAATGATTTCTTCAGAATATGG  945

seq1  TCATGTTATCAGACTATCTGTGAGTGACATGTCCAGCACAGAGAGCGGAA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTATCAGACTATCTGTGAGTGACATGTCCAGCACAGAGAGCGGAA  995

seq1  AGTCATAATTCACTGTCAAGCTACTGGTGCGTTGGTAGGAACTGAAATTA  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAATTCACTGTCAAGCTACTGGTGCGTTGGTAGGAACTGAAATTA  1045

seq1  AAACTGTGTCTGAAGACAGATTGACATTCAAGGCCAAGTTTCTACCATCT  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGTCTGAAGACAGATTGACATTCAAGGCCAAGTTTCTACCATCT  1095

seq1  CCCACAACTGATGATAGAATTTGGCTGGACAGGCTCATCTGGACAAGTTG  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAACTGATGATAGAATTTGGCTGGACAGGCTCATCTGGACAAGTTG  1145

seq1  AAAAATTATTTCATATCCTGAATTC  1163
      |||||||||||||||||||||||||
seq2  AAAAATTATTTCATATCCTGAATTC  1170