BAC Information

Click to search

BAC

Clone NameB6Ng01-211E14
Chromosome13 (Build37)
Map Location 9,980,072 - 10,108,112
singlet/doubletdoublet
Overlap geneChrm3
Upstream geneGtpbp4, LOC667721, Larp5, EG667727, LOC100039719, Dip2c, LOC666986, Zmynd11, LOC100039604
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211E14.bB6Ng01-211E14.g
ACCGA029393GA029394
length1,097922
definitionB6Ng01-211E14.b B6Ng01-211E14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,107,021 - 10,108,112)(9,980,072 - 9,980,983)
sequence
gaattccatcctcagcatatcatgtaaaaaggtaagtagatatgtatatg
gtaggtagatagatgaatggatgcatagctagatgacagatagatagatg
acaatagctagatgataaatagatgatagatagatagatagatagataga
tagatagatagatagatagatagatagatgacaatagctagatgataaat
agatggtggatagatagatgatagataataggtagatgatagatagatac
ataatagatacatagacaaatcagacaaatcttttgttttgttttgcttt
ttgagtttttttgctttggtttgtttgtttattttgttttggttttttga
gacagggtttctctgtgtagccctggctgtcctggaactcactatgtaga
ccaagctggcctcgaactcagaaatctgcctgcctctgcctctgcctccc
aactgctgggattaaaggtgtgtgccaccactgcccagctcagacagaca
aatctatagcaaatgaatagcacaatgaaaaggaactaaaaaattggcat
taggattattggtaatattttaaatttcatcattttttcacattgtccat
agtgtattttaaaagctagcattaaattatttttccaacttaattagtca
tactttacttttgttacctacctgggttctttctaaaaacttcaaccttt
aaatatgtgatgtatacatgatgtatacatgaaagataaattttcttaca
taccaatgggtcacaaattttgtatttcaaagtatttttagaaacaatat
agagttctgaatgtttagctttacaaagtagggacattttgcatttattc
ttttgctgttaacatttttaagaaaacttcagttataaagtaaggttata
ctgacacaggacctacttcctataacaaggagttggggcaggggagctta
agaagtgcttttgcacagaacttggctctctctgctccacctcctagata
catctcattacaattttattgccacatctctgaccttctcttctatgaag
aatttttattaatcatatttgcctttcatttaaagtagattactcag

gaattccttcttcacatgtcttctttttctttttttctgagatattttct
ttatttacatttcaaatgctatcccgaaagttccctataccctcccccac
cccgctcccctacccacccacttccacttcttggccctggcgttcccctg
tactgaggcatataaagtttgcaaaaccaagggacctctctttccactga
tggccggctaggccatcttctgatacatatgcagctaaagacatgagctc
tggggggtactggttagttcatattgttgttctgcctatagggttgcaga
cccttttagctccttgggtactttctctagctcctccattgcgggacctg
tgttccatcctatatgactgtgagcatccacttctatatttacatgtctt
ctaatgctgccacttcaaattccatttgtataagggatgggatatattca
ctgttcgcctagaagtgaagttttgtacgtaagttcaccacagacaacct
tcccaatctatctttggcagggaaaatactcaacatgagaaagagtttag
aactgtggtcctgttattgctcagaaacacgttgattagcttattgtcac
agcaaaggaaataaggaataaatgtcagattcctactggatgtatttctg
taacttacaaggctgtctttggaaatgccaggtgtttccgagttgcacca
atgcattttatttgtcttgcctccctactgtaattgagtcccagagaagg
gtggagctgcgtgtttccaactggctgaacccccttcagaggtctgaaaa
tatccatggtagtagccataactctgggtatcatttggacacattgctcc
tttgagaaacaccagcttggtgaaggcttcagttttccccaaattggaag
tggggaccaattgcaagtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_10107021_10108112
seq2: B6Ng01-211E14.b_48_1144 (reverse)

seq1  CTGAGTTATCTACTTTAAATAAAAAGCAAATATAGATT-ATAAAAATTC-  48
      |||||| ||||||||||||| ||| |||||||| |||| |||||||||| 
seq2  CTGAGTAATCTACTTTAAATGAAAGGCAAATAT-GATTAATAAAAATTCT  49

seq1  TCATAGAAGAAGAAGGTTCAGAGATGTGCCAATAAAATGGTAATGAGATG  98
      ||||||||| |||||| ||||||||||| ||||||||| |||||||||||
seq2  TCATAGAAG-AGAAGG-TCAGAGATGTGGCAATAAAATTGTAATGAGATG  97

seq1  TATCTA-GAGGTGGAGCAGAGAGAGCCAAGTTCTGTGC-AAAGCACCTCT  146
      |||||| ||||||||||||||||||||||||||||||| ||||||| |||
seq2  TATCTAGGAGGTGGAGCAGAGAGAGCCAAGTTCTGTGCAAAAGCACTTCT  147

seq1  TAAGCTCCCCCTGCCCCAACTCCTTTGTTATAGG-AGTAGGTCCTGTGTC  195
      |||||| |||||||||||||||| |||||||||| |||||||||||||||
seq2  TAAGCT-CCCCTGCCCCAACTCC-TTGTTATAGGAAGTAGGTCCTGTGTC  195

seq1  AGTATAACCTTACTTTAT-ACTG-AGTTTTCTTAAAAATGTTAACAGCAA  243
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  AGTATAACCTTACTTTATAACTGAAGTTTTCTTAAAAATGTTAACAGCAA  245

seq1  A--GATTAATGC-AAATGTCCCTACTTTGTAAAGCTAAACATTCAGAACT  290
      |   || ||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAATGCAAAATGTCCCTACTTTGTAAAGCTAAACATTCAGAACT  295

seq1  CTATATTGTTTCCTAAAATACTTTGAAATACAAAATTTGTGACCCATTGG  340
      ||||||||||||  ||||||||||||||||||||||||||||||||||||
seq2  CTATATTGTTTCTAAAAATACTTTGAAATACAAAATTTGTGACCCATTGG  345

seq1  TATGTAAGAAAATTTATCTTTCATGTATACATCATGTATACATCACATAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAGAAAATTTATCTTTCATGTATACATCATGTATACATCACATAT  395

seq1  TTAAAGGTTGAAGTTTTTAGAAAGAACCCAGGTAGGTAACAAAAGTAAAG  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGTTGAAGTTTTTAGAAAGAACCCAGGTAGGTAACAAAAGTAAAG  445

seq1  TATGACTAATTAAGTTGGAAAAATAATTTAATGCTAGCTTTTAAAATACA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTAATTAAGTTGGAAAAATAATTTAATGCTAGCTTTTAAAATACA  495

seq1  CTATGGACAATGTGAAAAAATGATGAAATTTAAAATATTACCAATAATCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGACAATGTGAAAAAATGATGAAATTTAAAATATTACCAATAATCC  545

seq1  TAATGCCAATTTTTTAGTTCCTTTTCATTGTGCTATTCATTTGCTATAGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCCAATTTTTTAGTTCCTTTTCATTGTGCTATTCATTTGCTATAGA  595

seq1  TTTGTCTGTCTGAGCTGGGCAGTGGTGGCACACACCTTTAATCCCAGCAG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTGTCTGAGCTGGGCAGTGGTGGCACACACCTTTAATCCCAGCAG  645

seq1  TTGGGAGGCAGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCTT  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGGCAGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGGCCAGCTT  695

seq1  GGTCTACATAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTG  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTACATAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTG  745

seq1  TCTCAAAAAACCAAAACAAAATAAACAAACAAACCAAAGCAAAAAAACTC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAAAACCAAAACAAAATAAACAAACAAACCAAAGCAAAAAAACTC  795

seq1  AAAAAGCAAAACAAAACAAAAGATTTGTCTGATTTGTCTATGTATCTATT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAAAACAAAACAAAAGATTTGTCTGATTTGTCTATGTATCTATT  845

seq1  ATGTATCTATCTATCATCTACCTATTATCTATCATCTATCTATCCACCAT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCTATCTATCATCTACCTATTATCTATCATCTATCTATCCACCAT  895

seq1  CTATTTATCATCTAGCTATTGTCATCTATCTATCTATCTATCTATCTATC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATCATCTAGCTATTGTCATCTATCTATCTATCTATCTATCTATC  945

seq1  TATCTATCTATCTATCTATCTATCTATCATCTATTTATCATCTAGCTATT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCATCTATTTATCATCTAGCTATT  995

seq1  GTCATCTATCTATCTGTCATCTAGCTATGCATCCATTCATCTATCTACCT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTATCTATCTGTCATCTAGCTATGCATCCATTCATCTATCTACCT  1045

seq1  ACCATATACATATCTACTTACCTTTTTACATGATATGCTGAGGATGGAAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATATACATATCTACTTACCTTTTTACATGATATGCTGAGGATGGAAT  1095

seq1  TC  1092
      ||
seq2  TC  1097


seq1: chr13_9980072_9980983
seq2: B6Ng01-211E14.g_69_990

seq1  GAATTCCTTCTTCACATGTCTTCTTTTTCTTTTTTTCTGAGATATTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTTCACATGTCTTCTTTTTCTTTTTTTCTGAGATATTTTCT  50

seq1  TTATTTACATTTCAAATGCTATCCCGAAAGTTCCCTATACCCTCCCCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACATTTCAAATGCTATCCCGAAAGTTCCCTATACCCTCCCCCAC  100

seq1  CCCGCTCCCCTACCCACCCACTTCCACTTCTTGGCCCTGGCGTTCCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTCCCCTACCCACCCACTTCCACTTCTTGGCCCTGGCGTTCCCCTG  150

seq1  TACTGAGGCATATAAAGTTTGCAAAACCAAGGGACCTCTCTTTCCACTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAGGCATATAAAGTTTGCAAAACCAAGGGACCTCTCTTTCCACTGA  200

seq1  TGGCCGGCTAGGCCATCTTCTGATACATATGCAGCTAAAGACATGAGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGGCTAGGCCATCTTCTGATACATATGCAGCTAAAGACATGAGCTC  250

seq1  TGGGGGGTACTGGTTAGTTCATATTGTTGTTCTGCCTATAGGGTTGCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGTACTGGTTAGTTCATATTGTTGTTCTGCCTATAGGGTTGCAGA  300

seq1  CCCTTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGCGGGACCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGCGGGACCTG  350

seq1  TGTTCCATCCTATATGACTGTGAGCATCCACTTCTATATTTACATGTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATCCTATATGACTGTGAGCATCCACTTCTATATTTACATGTCTT  400

seq1  CTAATGCTGCCACTTCAAATTCCATTTGTATAAGGGATGGGATATATTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTGCCACTTCAAATTCCATTTGTATAAGGGATGGGATATATTCA  450

seq1  CTGTTCGCCTAGAAGTGAAGTTTTGTACGTAAGTTCACCACAGACAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCGCCTAGAAGTGAAGTTTTGTACGTAAGTTCACCACAGACAACCT  500

seq1  TCCCAATCTATCTTTGGCAGGGAAAATACTCAACATGAGAAAGAGTTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAATCTATCTTTGGCAGGGAAAATACTCAACATGAGAAAGAGTTTAG  550

seq1  AACTGTGGTCCTGTTATTGCTCAGAAACACGTTGATTAGCTTATTGTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGGTCCTGTTATTGCTCAGAAACACGTTGATTAGCTTATTGTCAC  600

seq1  AGCAAAGGAAATAAGGAATAAATGTCAGATTCCTACTGGATGTATTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAGGAAATAAGGAATAAATGTCAGATTCCTACTGGATGTATTTCTG  650

seq1  TAACTTACAAGGCTGTCTTTGGAAATGCCAGGTGTTTCCGAGTTGCACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTACAAGGCTGTCTTTGGAAATGCCAGGTGTTTCCGAGTTGCACCA  700

seq1  ATGCA-TTTATTTGTCTTGCCTCCCTACTGTAATTGAGTCCCAGAGAAGG  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTTATTTGTCTTGCCTCCCTACTGTAATTGAGTCCCAGAGAAGG  750

seq1  GTGGAGCTGCGTGTTTCCAACTGGCTGAACCCCCTTCAGAGGTCTGAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGCTGCGTGTTTCCAACTGGCTGAACCCCCTTCAGAGGTCTGAAAA  800

seq1  TAT-CATGGTAGTAGCCATAACTCT-GGTATCA-TTGGACACA-TGCTCC  845
      ||| ||||||||||||||||||||| ||||||| ||||||||| ||||||
seq2  TATCCATGGTAGTAGCCATAACTCTGGGTATCATTTGGACACATTGCTCC  850

seq1  -TTGAGAAACACCAGC-TGGTGAAGGCTTCAG-TTTCCCCAAATTGGAAG  892
       ||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  TTTGAGAAACACCAGCTTGGTGAAGGCTTCAGTTTTCCCCAAATTGGAAG  900

seq1  T-GGGACCAATTGC-AGTGTGT  912
      | |||||||||||| |||||||
seq2  TGGGGACCAATTGCAAGTGTGT  922


| Home | SequenceCutter | Blast | Download |