BAC Information

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BAC

Clone NameB6Ng01-212A09
Chromosome13 (Build37)
Map Location 47,518,114 - 47,519,211
singlet/doubletsinglet
Overlap genenone
Upstream geneRbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
Downstream gene4931429P17Rik, Id4, LOC667351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212A09.bB6Ng01-212A09.g
ACCGA029927GA029928
length1,1001,226
definitionB6Ng01-212A09.b B6Ng01-212A09.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccattatccaggtgaaagctgtgtgtttgtacatacccctaatc
ccagcaatgggtgacagagacaggaagatccctgtgtcttcctggccagc
aagcagatctaggtaagtttctaaagtgactctacattagaaaaattaag
gtaaaaagtgactttgacttctgcctccagatgcacgcatatatacatgt
atgtgctcacacattcacacacacacacacacacacacacacgcatacct
accacccatacacttgtgtacacacagtcacacacttgcacacacatgca
catacacatttgtacctgcctccatctccatagtgctggtattacagagt
gtattactaagacaaggtcattcttttttttttttttttttcccacacag
gtgtctaattaactcaggcaccaactgctgaaaggataattctttcccca
ttcactagccttgtatcatgttaaagctcaactaatgacctatgagtggg
ttgctttgggcatctcctctgtttcattgcacttttttatgccacaccac
actatcttgaaaataggtaagtcctctttctttttcttctaaattttccc
aggacattttatttccatataaacagcatcattatgccattttataaaaa
agaccctctagattcatgcaaccatatacttctcttccctacccttgctt
ggtcttttaacgtgtgaaatggtatcgcatttttactgtttctgctgttc
ctaactctgctgctctggtctgttttccttatgtattgtttttccttgct
tgagagacctcacactcctttacgatgctgggatgctggtgggacaactg
tttgtttttccagagtttgtatggtaggatgtctttatttccccccttta
ttttcagagttcttctctggatggacagagcttggcaggtgttttcccct
cagtcttcctataagtcatggcactgtgttctggccggcactgggttccg
ccggccactgggttcccgcggcactgggttcccgccggcacctgtgttct
tggtgggcactgtgttctgccgcactgtgttccgccggcactgtgttccg

gaattcagagtccagaaatgggaagacacaaatagaggcagttgattgtt
gacaagggcataagacagtccagtactatgtcttcaacagatggtatgga
acaagaagatgcccatagacaaaaaaaaaaaaaaaaaaaaactctatatg
ttttgatgtatataaaagtgaaaactaacagtatcaatatgaataatagg
ctgaaacatcaaatgcaagacattaaaaattcaggataataagtgtaggg
gggaaatcttcataatgaaagatctggaggtgagtctttagacaaagcac
catacacccaactcttgacatttaaaacctggttaattaaatactattca
catgaaaaactgtactctgtgaacagcacttaacataaatacttgccaat
cacatatatgataaataacttgtatttagaataataataataaatctaga
attataataaggtttttaaaccttaaattaaaaaggcaacaagacaagcc
aggcatggtggcatgtgcctataatcccaacacaaggaagagcgctgaaa
gcagaaagatctagggttcatggctagcctgggctatgcaacaccatcac
aaaacaaaacagaaaacagaggaaagacatgaaaacaggcaaaattccaa
agagaaacttgatcaaaatttaacaaatatgtaagggaaacaagccttta
aatacgatttagcaccacttgtcataagcaaatgaaaatctgagacaagt
atgaaaccctgatcaacataaattggaatggctaaaatccaaccagcaga
aagtcacatggattttatactttattatgtactccataaatatgtacaat
ttttctgtatagcaattaaaaataaagcagacatttgggggtgagggagg
agatggctccgtagctgaagttccagccacacaagcatgaacaccttaaa
gttcaattcctctgatctccatggaaagttggacctggtgccatggacct
ggggagaaaaaagaccgaaggacccctggggtcacctggggagccagcct
agcctacttggtgagctcaaggtcaggtgtgagggcgttgtctccagagg
agtacagattgctctgcctgctaaccccaagtcttctgaagcttcacata
gcggttcacctacccaccgatacctacttgcgaccgtccacgtactagac
gaatcatgatcagtaccgatacgacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_47518114_47519211
seq2: B6Ng01-212A09.b_46_1145

seq1  GAATTCCCATTATCCAGGTGAAAGCTGTGTGTTTGTACATACCCCTAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTATCCAGGTGAAAGCTGTGTGTTTGTACATACCCCTAATC  50

seq1  CCAGCAATGGGTGACAGAGACAGGAAGATCCCTGTGTCTTCCTGGCCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAATGGGTGACAGAGACAGGAAGATCCCTGTGTCTTCCTGGCCAGC  100

seq1  AAGCAGATCTAGGTAAGTTTCTAAAGTGACTCTACATTAGAAAAATTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGATCTAGGTAAGTTTCTAAAGTGACTCTACATTAGAAAAATTAAG  150

seq1  GTAAAAAGTGACTTTGACTTCTGCCTCCAGATGCACGCATATATACATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAGTGACTTTGACTTCTGCCTCCAGATGCACGCATATATACATGT  200

seq1  ATGTGCTCACACATTCACACACACACACACACACACACACACGCATACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTCACACATTCACACACACACACACACACACACACACGCATACCT  250

seq1  ACCACCCATACACTTGTGTACACACAGTCACACACTTGCACACACATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCATACACTTGTGTACACACAGTCACACACTTGCACACACATGCA  300

seq1  CATACACATTTGTACCTGCCTCCATCTCCATAGTGCTGGTATTACAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATTTGTACCTGCCTCCATCTCCATAGTGCTGGTATTACAGAGT  350

seq1  GTATTACTAAGACAAGGTCATTCTTTTTTTTTTTTTTTTTTCCCACACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTACTAAGACAAGGTCATTCTTTTTTTTTTTTTTTTTTCCCACACAG  400

seq1  GTGTCTAATTAACTCAGGCACCAACTGCTGAAAGGATAATTCTTTCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTAATTAACTCAGGCACCAACTGCTGAAAGGATAATTCTTTCCCCA  450

seq1  TTCACTAGCCTTGTATCATGTTAAAGCTCAACTAATGACCTATGAGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAGCCTTGTATCATGTTAAAGCTCAACTAATGACCTATGAGTGGG  500

seq1  TTGCTTTGGGCATCTCCTCTGTTTCATTGCACTTTTTTATGCCACACCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTGGGCATCTCCTCTGTTTCATTGCACTTTTTTATGCCACACCAC  550

seq1  ACTATCTTGAAAATAGGTAAGTCCTCTTTCTTTTTCTTCTAAATTTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTGAAAATAGGTAAGTCCTCTTTCTTTTTCTTCTAAATTTTCCC  600

seq1  AGGACATTTTATTTCCATATAAACAGCATCATTATGCCATTTTATAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATTTTATTTCCATATAAACAGCATCATTATGCCATTTTATAAAAA  650

seq1  AGACCCTCTAGATTCATGCAACCATATACTTCTCTTCCCTACCCTTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCCTCTAGATTCATGCAACCATATACTTCTCTTCCCTACCCTTGCTT  700

seq1  GGTCTTTTAACGTGTGAAATGGTATCGCATTTTTACTGTTTCTGCTGTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTTAACGTGTGAAATGGTATCGCATTTTTACTGTTTCTGCTGTTC  750

seq1  CTAACTCTGCTGCTCTGGTCTGTTTTCCTTATGTATTGTTTTTCCTTGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCTGCTGCTCTGGTCTGTTTTCCTTATGTATTGTTTTTCCTTGCT  800

seq1  TGAGAGACCTCACACTCC-TTACGATGCTGGGATGCTGGTGGGACAACTG  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGAGAGACCTCACACTCCTTTACGATGCTGGGATGCTGGTGGGACAACTG  850

seq1  TTTGTTTTTCCAGAGTTTGTATGGTAGGATGTCTTTATTTCCCCCCTTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTCCAGAGTTTGTATGGTAGGATGTCTTTATTTCCCCCCTTTA  900

seq1  TTTTCAGAGTTCTTCTCTGGATGGACAGAGCTTGGCAGGTGTTTT-CCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTCAGAGTTCTTCTCTGGATGGACAGAGCTTGGCAGGTGTTTTCCCCT  950

seq1  CAGTC-TCCTAT-AGTCATGGCACTGTGTTCTGGCGGGCACTGGGTTCCG  996
      ||||| |||||| |||||||||||||||||||||| ||||||||||||||
seq2  CAGTCTTCCTATAAGTCATGGCACTGTGTTCTGGCCGGCACTGGGTTCCG  1000

seq1  GCGGGCACTGGGTTCCGGCGGGCACTGGGTTCCGGCGGGCA-CTGTGTTC  1045
       ||| ||||||||||| || ||||||||||||| || |||| ||||||||
seq2  CCGGCCACTGGGTTCCCGC-GGCACTGGGTTCCCGCCGGCACCTGTGTTC  1049

seq1  -TGGTGGGCACTGTGTTCTGGCGGGCACTGTGTTCCGGCGGGCACTGTGT  1094
       ||||||||||||||||||| |  |||||||||||| || ||||||||||
seq2  TTGGTGGGCACTGTGTTCTGCC--GCACTGTGTTCC-GCCGGCACTGTGT  1096

seq1  TCCG  1098
      ||||
seq2  TCCG  1100