BAC Information

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BAC

Clone NameB6Ng01-213M01
Chromosome13 (Build37)
Map Location 7,383,987 - 7,525,856
singlet/doubletdoublet
Overlap geneEG623516
Upstream genePitrm1, Pfkp, LOC100039532, LOC667611
Downstream geneLOC791083, LOC382722, Adarb2, EG666941
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213M01.bB6Ng01-213M01.g
ACCGA031188GA031189
length1,1781,113
definitionB6Ng01-213M01.b B6Ng01-213M01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,524,665 - 7,525,856)(7,383,987 - 7,385,104)
sequence
gaattctctgtttagctctgttccccatttttttgatagggttattagtt
tctctggagtctgacttcttgagttctctgtatacattggtataagccct
ctgtcggattgtgccacagctctctatacccacatccttcagggagagaa
ctcatctcccaggagtgctgacacaccggagagcactggtgagaccacca
cttctgcttggtcttgaatacattttatactcactgtgtatccatgatcc
cacatgataccttctgtgtatcttgacttctcgtggtttgtcttaagatg
tttaaccttactttaaaaggatgagaagtatcttatagattctgaccttc
cacatttaaacgtcaatgtttttctctgataacaggatgcaggacaatac
tcacttaagatgctgagctgtattgagcaaaagccccagccagatgcaca
atcaaaatgataaatgaccgatactcagtagggttctctgttaccagcat
tgtcctcagactcatataaatggcaaaacatattcattaccctattataa
aattgggtttctttttaacgattttacttgcctgttagataaagttactc
tgcacctgcttatgggagatgaggccatgtgattacatttgttgtgttta
gtgcatgggatgcattttaatttaaaatattttaaatttaatatgggctt
ggagttctaatccacattctaagccaaggaccaaccaactttatatgttt
gttttccccattttattttgacaacctttatttgtctcaatattactgat
gtaatctgtctcctggtacatagttaaaagttttaattataatgatgcag
aaatagtacaatttattctgtttacctgcagaaatgtaatattctcattt
tctctctttttttcctttcttatacgtaatcaagtggctattttgacata
gttctattgtgtccagagatactaccttttacttagacttttctagaacc
tacagttagattccctataccattccatttgatttcttcttccatgcata
tttttctacactccctgtcaatattctttactgccaatcaattagtatat
tgacattcaagttttttctttttgattcatttcttatattggaacctggt
gcctatcaatacttcgaactcccaggga

gaattcatgagtatttcaaacctttattctttgacataaaaacaatgagc
aaaatattcttgtttctgcaattattatttaaaaacaaaacagtgtttta
tggacttgatgattctaacaatagagccaagtagcaaggtcttctagtct
aatatatctagaatgatccagataattaggtacttttgttatttcacaca
tcttggaaaaatcatcacatgataatctcagtgtatcagacttaattttt
actaaagtcttattgaacatatttattttaaaaagaatattgcatcaaaa
gaaatatgtacaatatttagtcttttcatttttgtgttatctaatagacc
atggcaaagtgtcataaacatcttagaggaaattactctcttttggagat
tggaacagtcgatctagattgattaaaggccagtgacaaaaccagagtcc
tattatagcaattataacttatttaggtttagcatatttataactgctcc
aagcaatgaacttttggataagtttctttgcctctaccctaaaacaaagc
aggtttgatatatatattattgtaatgacttacaggctgcagcccagcta
aaataacaatggctggaacagaaatttcaagaaaccagcatttgctcaat
caacaaggctgaatatctcagatggtctttaatacatgctggaattccaa
agaagtaagtaggttttaataatgtactacaaaggcaagggcaagcagga
aaagataactcacgagtatgccattcatttctggattgtagttcattcca
gatgtaatcaagttgataatcaagaataggtatcacagtatatatatatt
gtgatatatcacacacacatacacacacacacacacacacacacacacac
acacacacacacacacacatgctatgaaaagtgaggaccaaagactggtc
aatatttaaaaaaagaaagactttctagtggctacttcagttatccattg
tccactgctacaatattttttgttcaatttcatgacctctgcacttctct
ctgtctctcccaatactgcatgctcttctttttcctcccttcccaaggaa
aaaattcactgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_7524665_7525856
seq2: B6Ng01-213M01.b_41_1218 (reverse)

seq1  TCCCTGGGAGTCTGGAAGTTATTGGGAATTTAGCCAC--AGTGTCAATAT  48
      ||||||||||| | |||| |||||      ||| |||   ||  ||||||
seq2  TCCCTGGGAGT-TCGAAG-TATTG-----ATAGGCACCAGGTTCCAATAT  43

seq1  AAGAAATGAAATTAAAAAGAAAAAAACCTGAAATGTCATTTATTACTAAT  98
      |||||||| ||| ||||||||||||  ||  ||||||| |   |||||||
seq2  AAGAAATG-AATCAAAAAGAAAAAA--CTTGAATGTCAAT--ATACTAAT  88

seq1  TGGATTTGCAGTAAAGATTATTTGACAGGGAGTGTTAGAAAATATGCATG  148
      | |||| |||||||||| || ||||||||||||||   ||||||||||||
seq2  T-GATTGGCAGTAAAGAATA-TTGACAGGGAGTGTAGAAAAATATGCATG  136

seq1  GGAAGAGAAATCAAATTGGAATGGTATAGGGAATCTAACTGTAGGTTTCT  198
      | |  |||||||||| ||||||||||||||||||||||||||||| ||||
seq2  GAAGAAGAAATCAAA-TGGAATGGTATAGGGAATCTAACTGTAGG-TTCT  184

seq1  AGAAAAGTCTAAGTAAAAGGTAGTATCTCTGGACACAATAGAACTATGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTCTAAGTAAAAGGTAGTATCTCTGGACACAATAGAACTATGTC  234

seq1  AAAATAGCCACTTGATTACGTATAAGAAAGGAAAAAAAGAGAGAAAATGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGCCACTTGATTACGTATAAGAAAGGAAAAAAAGAGAGAAAATGA  284

seq1  GAATATTACATTTCTGCAGGTAAACAGAATAAATTGTACTATTTCTGCAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTACATTTCTGCAGGTAAACAGAATAAATTGTACTATTTCTGCAT  334

seq1  CATTATAATTAAAACTTTTAACTATGTACCAGGAGACAGATTACATCAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAATTAAAACTTTTAACTATGTACCAGGAGACAGATTACATCAGT  384

seq1  AATATTGAGACAAATAAAGGTTGTCAAAATAAAATGGGGAAAACAAACAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGAGACAAATAAAGGTTGTCAAAATAAAATGGGGAAAACAAACAT  434

seq1  ATAAAGTTGGTTGGTCCTTGGCTTAGAATGTGGATTAGAACTCCAAGCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTGGTTGGTCCTTGGCTTAGAATGTGGATTAGAACTCCAAGCCC  484

seq1  ATATTAAATTTAAAATATTTTAAATTAAAATGCATCCCATGCACTAAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAATTTAAAATATTTTAAATTAAAATGCATCCCATGCACTAAACA  534

seq1  CAACAAATGTAATCACATGGCCTCATCTCCCATAAGCAGGTGCAGAGTAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATGTAATCACATGGCCTCATCTCCCATAAGCAGGTGCAGAGTAA  584

seq1  CTTTATCTAACAGGCAAGTAAAATCGTTAAAAAGAAACCCAATTTTATAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTAACAGGCAAGTAAAATCGTTAAAAAGAAACCCAATTTTATAA  634

seq1  TAGGGTAATGAATATGTTTTGCCATTTATATGAGTCTGAGGACAATGCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTAATGAATATGTTTTGCCATTTATATGAGTCTGAGGACAATGCTG  684

seq1  GTAACAGAGAACCCTACTGAGTATCGGTCATTTATCATTTTGATTGTGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGAGAACCCTACTGAGTATCGGTCATTTATCATTTTGATTGTGCA  734

seq1  TCTGGCTGGGGCTTTTGCTCAATACAGCTCAGCATCTTAAGTGAGTATTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGGGGCTTTTGCTCAATACAGCTCAGCATCTTAAGTGAGTATTG  784

seq1  TCCTGCATCCTGTTATCAGAGAAAAACATTGACGTTTAAATGTGGAAGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCATCCTGTTATCAGAGAAAAACATTGACGTTTAAATGTGGAAGGT  834

seq1  CAGAATCTATAAGATACTTCTCATCCTTTTAAAGTAAGGTTAAACATCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCTATAAGATACTTCTCATCCTTTTAAAGTAAGGTTAAACATCTT  884

seq1  AAGACAAACCACGAGAAGTCAAGATACACAGAAGGTATCATGTGGGATCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAACCACGAGAAGTCAAGATACACAGAAGGTATCATGTGGGATCA  934

seq1  TGGATACACAGTGAGTATAAAATGTATTCAAGACCAAGCAGAAGTGGTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATACACAGTGAGTATAAAATGTATTCAAGACCAAGCAGAAGTGGTGG  984

seq1  TCTCACCAGTGCTCTCCGGTGTGTCAGCACTCCTGGGAGATGAGTTCTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCAGTGCTCTCCGGTGTGTCAGCACTCCTGGGAGATGAGTTCTCT  1034

seq1  CCCTGAAGGATGTGGGTATAGAGAGCTGTGGCACAATCCGACAGAGGGCT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAAGGATGTGGGTATAGAGAGCTGTGGCACAATCCGACAGAGGGCT  1084

seq1  TATACCAATGTATACAGAGAACTCAAGAAGTCAGACTCCAGAGAAACTAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAATGTATACAGAGAACTCAAGAAGTCAGACTCCAGAGAAACTAA  1134

seq1  TAACCCTATCAAAAAAATGGGGAACAGAGCTAAACAGAGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCTATCAAAAAAATGGGGAACAGAGCTAAACAGAGAATTC  1178


seq1: chr13_7383987_7385104
seq2: B6Ng01-213M01.g_66_1178

seq1  GAATTCATGAGTATTTCAAACCTTTATTCTTTGACATAAAAACAATGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGTATTTCAAACCTTTATTCTTTGACATAAAAACAATGAGC  50

seq1  AAAATATTCTTGTTTCTGCAATTATTATTTAAAAACAAAACAGTGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATTCTTGTTTCTGCAATTATTATTTAAAAACAAAACAGTGTTTTA  100

seq1  TGGACTTGATGATTCTAACAATAGAGCCAAGTAGCAAGGTCTTCTAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGATGATTCTAACAATAGAGCCAAGTAGCAAGGTCTTCTAGTCT  150

seq1  AATATATCTAGAATGATCCAGATAATTAGGTACTTTTGTTATTTCACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATCTAGAATGATCCAGATAATTAGGTACTTTTGTTATTTCACACA  200

seq1  TCTTGGAAAAATCATCACATGATAATCTCAGTGTATCAGACTTAATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAAAAATCATCACATGATAATCTCAGTGTATCAGACTTAATTTTT  250

seq1  ACTAAAGTCTTATTGAACATATTTATTTTAAAAAGAATATTGCATCAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTCTTATTGAACATATTTATTTTAAAAAGAATATTGCATCAAAA  300

seq1  GAAATATGTACAATATTTAGTCTTTTCATTTTTGTGTTATCTAATAGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGTACAATATTTAGTCTTTTCATTTTTGTGTTATCTAATAGACC  350

seq1  ATGGCAAAGTGTCATAAACATCTTAGAGGAAATTACTCTCTTTTGGAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAAAGTGTCATAAACATCTTAGAGGAAATTACTCTCTTTTGGAGAT  400

seq1  TGGAACAGTCGATCTAGATTGATTAAAGGCCAGTGACAAAACCAGAGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACAGTCGATCTAGATTGATTAAAGGCCAGTGACAAAACCAGAGTCC  450

seq1  TATTATAGCAATTATAACTTATTTAGGTTTAGCATATTTATAACTGCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAGCAATTATAACTTATTTAGGTTTAGCATATTTATAACTGCTCC  500

seq1  AAGCAATGAACTTTTGGATAAGTTTCTTTGCCTCTACCCTAAAACAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGAACTTTTGGATAAGTTTCTTTGCCTCTACCCTAAAACAAAGC  550

seq1  AGGTTTGATATATATATTATTGTAATGACTTACAGGCTGCAGCCCAGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGATATATATATTATTGTAATGACTTACAGGCTGCAGCCCAGCTA  600

seq1  AAATAACAATGGCTGGAACAGAAATTTCAAGAAACCAGCATTTGCTCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACAATGGCTGGAACAGAAATTTCAAGAAACCAGCATTTGCTCAAT  650

seq1  CAACAAGGCTGAATATCTCAGATGGTCTTTAATACATGCTGGAATTCCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGCTGAATATCTCAGATGGTCTTTAATACATGCTGGAATTCCAA  700

seq1  AGAAGTAAGTAGGTTTTAATAATGTACTACAAAGGCAAGGGCAAGCAGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAGTAGGTTTTAATAATGTACTACAAAGGCAAGGGCAAGCAGGA  750

seq1  AAAGATAACTCACGAGTATGCCATTCATTTCTGGATTGTAGTTCATTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAACTCACGAGTATGCCATTCATTTCTGGATTGTAGTTCATTCCA  800

seq1  GATGTAATCAAGTTGATAATCAAGAATAGGTATCACAGTATATATATATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATCAAGTTGATAATCAAGAATAGGTATCACAGTATATATATATT  850

seq1  GTGATATATCACACACACATACACACACACACACACACACACACACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATATATCACACACACATACACACACACACACACACACACACACACAC  900

seq1  ACACACACACACACACACATGCTATGAAAAGTGAGGACCAAAGACTGGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACATGCTATGAAAAGTGAGGACCAAAGACTGGTC  950

seq1  AATATTTAAAAAAGAAAAGACTTTCTAGTGGCTACTTCAGTTATCCATTG  1000
      |||||||||||||  |||||||||||||||||||||||||||||||||||
seq2  AATATTTAAAAAAAGAAAGACTTTCTAGTGGCTACTTCAGTTATCCATTG  1000

seq1  TCCACTGCTAC-ATA-TTTTTGTTCAATTTCATGGCCCTCTGCACTTCTC  1048
      ||||||||||| ||| ||||||||||||||||| | ||||||||||||||
seq2  TCCACTGCTACAATATTTTTTGTTCAATTTCAT-GACCTCTGCACTTCTC  1049

seq1  TCCTGTCTCTTCCCATACTGCATGCTTCTTCTTTTTTTCCTCCCTTCCCA  1098
      | |||||||| || ||||||||||| |||||  |||||||||||||||| 
seq2  T-CTGTCTCTCCCAATACTGCATGC-TCTTC--TTTTTCCTCCCTTCCC-  1094

seq1  AAAGAAAAAAAATCACTGAT  1118
       ||| |||||| ||||||||
seq2  -AAGGAAAAAATTCACTGAT  1113


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