BAC Information

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BAC

Clone NameB6Ng01-215C10
Chromosome13 (Build37)
Map Location 41,043,357 - 41,044,405
singlet/doubletsinglet
Overlap geneGcnt2
Upstream geneOfcc1, LOC666894, LOC100039048, Tcfap2a, EG621629, EG637157, LOC100039105
Downstream genePak1ip1, Tmem14c, Mak, EG621771, Gcm2, LOC637277, Elovl2, LOC268650, BC024659, Nedd9, EG621976, EG328231, 9530008L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215C10.bB6Ng01-215C10.g
ACCGA032203GA032204
length1,2271,048
definitionB6Ng01-215C10.b B6Ng01-215C10.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaaaagaagaaactcaaagggccaagaaacccttacagaaatg
ttcaacatccttagccatcagggagatgcaaatgaaaagcactgtgagat
ttcaccttacccctgtcaaaatgcctcaggtcagtcacacatgtgacggc
tcatgctggtgaggacatggctgcaagacagactagtgccatagtggttc
aatgtttgtgggagtaaccacaagctctggtttgacttaaggaccactcc
actggatgaaacccatactggacactgcttgggttgccaagaacttagac
ttgatagcacagggacttagggtaaccagaatactactgatctattaaaa
ggaaacgtcaataaaatgacttctgatgacattctgccatgctcagatca
gtgccttgctcagccgtcatcagagaagctccctcctgcagtagacggag
acccacagccagacaatatgcatagagtgagagacctcggaaccctttcc
cctaaacaggatgtcttcacaaaatctctcttttccaggtctctgggaat
cctgcagaagaggaggcagagagagagtctaaaaagtcagagggcatgga
ggacacctagaaaacaagaccgtctaaatcatccaagcaaagctcacgtg
aacgcacagagactgatgcagctcgcacagggcctgcaccggtctgcacc
aggtcctctgcataaacattatggcttccgggttagtggttttgtgggat
tcctgagtggttttcagatttttgtggcttctcaggttcttttcctcgtg
tttctttgttttgtccaattccaatgtgttagtgtttagtttatcttact
gtgtttgattttattttaccttgttttattattatcccttagagccctgt
ttgtttactagtgagagacagaaaggaagtggatcccgatggaaaggaag
tggggaggaactgggaagaagggactgtaatcatggatattatgtgaaag
aaggaaatccattttcaattaagaaggaacaaattcaaatacctaaccag
gcatggtggcctccacacctgtaatctagcactctgggaagctaaggcag
aatgatcgcctgtgatttgaagcattctctggactgttcgtggagttcag
cagctggagttaccgagttggaccaatccaagatattaacagattatatg
gaaaaggtatttccataatttccagtg
gaattcctggggagattccaattcctttgggaccattgttttgagtagtc
agatagccagtgggaagggcacaaggatctctttaaaatatcttccttag
gttggcagtaatccaacagtctggtctacagagagagttccagaacagcc
aggacgacacatagttagggagaccctgtctggaaaaacgaaatgaaacg
aaacaaaacaaaattaaaactatctttcctgccaggccaggaagatgtgg
gcaaatcctgtaccactgtttatgagggatttgaacatcttcagattttg
gtatccaaagaagagagggggagggaggtcttcgatccaacccccaagga
tgtggacagagggctgtactgacaaaatccagccaggatttgtcacactg
caccttcacaggagtaaattagttgtcttaaagtcaaataacttgaagtc
ctgacttcagaattgtgtttgtcagtctatgtaacaatgttatagttacc
agattcctgtatacatctatatcttccaaaaaattattatattttatttt
gaaggagttgattcgaatggaccaaagtgggggcggggggagggacgaca
gttatggtagcttttcctactggttagccaggaatgttctagaactgtct
tgctgtccagcaccatcactaaattgtgagaaatctcaaggcttgatatt
taaattccttgtatgtccagtaagtgggtgaaagtgaaagaggatatatc
tgggcttgaatcaagcagttgctggaacttgttcacacacacacacacac
acacacacacacaaacacacaaacacacacacgagtctccccaaatgagg
agaaaaccggggagatagtgaggagagatggagttcacagaaacaagctc
gaatttcaaagaatcctattcgttattttaaccaagcacagttatttcta
ccggtaaaggcaagaaacctcagagaacatttccagtccttcttccaaat
ttttatctcaaatgtccttattttccgagtccatgaagcaagatgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_41043357_41044405
seq2: B6Ng01-215C10.g_70_1117

seq1  GAATTCCTGGGGAGATTCCAATTCCTTTGGGACCATTGTTTTGAGTAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGGAGATTCCAATTCCTTTGGGACCATTGTTTTGAGTAGTC  50

seq1  AGATAGCCAGTGGGAAGGGCACAAGGATCTCTTTAAAATATCTTCCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGCCAGTGGGAAGGGCACAAGGATCTCTTTAAAATATCTTCCTTAG  100

seq1  GTTGGCAGTAATCCAACAGTCTGGTCTACAGAGAGAGTTCCAGAACAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAGTAATCCAACAGTCTGGTCTACAGAGAGAGTTCCAGAACAGCC  150

seq1  AGGACGACACATAGTTAGGGAGACCCTGTCTGGAAAAACGAAATGAAACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACGACACATAGTTAGGGAGACCCTGTCTGGAAAAACGAAATGAAACG  200

seq1  AAACAAAACAAAATTAAAACTATCTTTCCTGCCAGGCCAGGAAGATGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACAAAATTAAAACTATCTTTCCTGCCAGGCCAGGAAGATGTGG  250

seq1  GCAAATCCTGTACCACTGTTTATGAGGGATTTGAACATCTTCAGATTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATCCTGTACCACTGTTTATGAGGGATTTGAACATCTTCAGATTTTG  300

seq1  GTATCCAAAGAAGAGAGGGGGAGGGAGGTCTTCGATCCAACCCCCAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCAAAGAAGAGAGGGGGAGGGAGGTCTTCGATCCAACCCCCAAGGA  350

seq1  TGTGGACAGAGGGCTGTACTGACAAAATCCAGCCAGGATTTGTCACACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACAGAGGGCTGTACTGACAAAATCCAGCCAGGATTTGTCACACTG  400

seq1  CACCTTCACAGGAGTAAATTAGTTGTCTTAAAGTCAAATAACTTGAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTCACAGGAGTAAATTAGTTGTCTTAAAGTCAAATAACTTGAAGTC  450

seq1  CTGACTTCAGAATTGTGTTTGTCAGTCTATGTAACAATGTTATAGTTACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCAGAATTGTGTTTGTCAGTCTATGTAACAATGTTATAGTTACC  500

seq1  AGATTCCTGTATACATCTATATCTTCCAAAAAATTATTATATTTTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCCTGTATACATCTATATCTTCCAAAAAATTATTATATTTTATTTT  550

seq1  GAAGGAGTTGATTCGAATGGACCAAAGTGGGGGCGGGGGGAGGGACGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGTTGATTCGAATGGACCAAAGTGGGGGCGGGGGGAGGGACGACA  600

seq1  GTTATGGTAGCTTTTCCTACTGGTTAGCCAGGAATGTTCTAGAACTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGTAGCTTTTCCTACTGGTTAGCCAGGAATGTTCTAGAACTGTCT  650

seq1  TGCTGTCCAGCACCATCACTAAATTGTGAGAAATCTCAAGGCTTGATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCCAGCACCATCACTAAATTGTGAGAAATCTCAAGGCTTGATATT  700

seq1  TAAATTCCTTGTATGTCCAGTAAGTGGGTGAAAGTGAAAGAGGATATATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCCTTGTATGTCCAGTAAGTGGGTGAAAGTGAAAGAGGATATATC  750

seq1  TGGGCTTGAATCAAGCAGTTGCTGGAACTTGTTCACACACACACACACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTGAATCAAGCAGTTGCTGGAACTTGTTCACACACACACACACAC  800

seq1  ACACACACACACAAACACACAAACACACACACGAGTCTCCCCAAATGAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAAACACACAAACACACACACGAGTCTCCCCAAATGAGG  850

seq1  AGAAAACCGGGGAGATAGTGAGGAGAGATGGAGTTCACAGAAACAAAGCT  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGAAAACCGGGGAGATAGTGAGGAGAGATGGAGTTCACAGAAAC-AAGCT  899

seq1  CGAATTTCAAAGAATCCTATTCGTTTATTTAACCAAGCACAGTTA-TTCT  949
      |||||||||||||||||||||||||  |||||||||||||||||| ||||
seq2  CGAATTTCAAAGAATCCTATTCGTTATTTTAACCAAGCACAGTTATTTCT  949

seq1  ACCGGTAAAGGC-AGAAACCCAAGAGAAACATTCCAAGTTCCTC-TCCAA  997
      |||||||||||| |||||||  |||| |||||| | ||| | || |||||
seq2  ACCGGTAAAGGCAAGAAACCTCAGAG-AACATTTCCAGTCCTTCTTCCAA  998

seq1  A-TTTTATCTCAAATGTTC-TATTTTCAGAAGCCCATGAAAAGCAAAGAT  1045
      | ||||||||||||||| | ||||||| | || |||||  |||| |||||
seq2  ATTTTTATCTCAAATGTCCTTATTTTCCG-AGTCCATG--AAGC-AAGAT  1044

seq1  GAGA  1049
      ||||
seq2  GAGA  1048