BAC Information

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BAC

Clone NameB6Ng01-216E17
Chromosome13 (Build37)
Map Location 22,652,341 - 22,814,748
singlet/doubletdoublet
Overlap geneV1rh8, V1rh7, LOC382740
Upstream geneOlfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4, V1ri7, V1rh11, OTTMUSG00000000494
Downstream geneLOC432735, V1rh9, OTTMUSG00000000514, V1rh10, V1rh20, V1rh18, V1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216E17.bB6Ng01-216E17.g
ACCGA033023GA033024
length1,0061,109
definitionB6Ng01-216E17.b B6Ng01-216E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,814,106 - 22,814,748)(22,652,341 - 22,653,378)
sequence
gaattctgtacaagaaaatatcccaaccctgtataaagctattacatcct
tgtgtctccccaagataatatgcagctgtggcagcaagaagtgagactgg
aatctcaggtgcatatgtgaaaataggctccagtccctgtccataacaca
gacacacctaaacaaacacagacacatgcacacacacacacacacacaca
cacacacactaggctttaactattttcatttctagtctcataggacaaac
tgcttctctatcattctatttcattgttgtgactgtaagcaaatgtacta
taagaactgctataagaactcaaccctgggtcagtggtacttacttcgag
atgttcccaagtaagacacccaacaggcagatctcagaaagaaggtttat
tttatttcatttgcaaaagaaaggtttattttctggggaattggggccaa
ccttcaattagtccctaatgtgagtgactagaaggcgaccttgaatggct
attacaagcagcttttatactttttgggaggacaggttacatcagcaagg
ttagagttcaaacttattgggtaagcatattgacctttaaatctattggt
gagcaagcatgatgcacttttgaactctacctgggactttccagagggtc
atgtgtctatcagtacattctgagaattttttactcaagaatgttcttgt
gggtggagaatggaactcagcttagccttgaccccaggtgggaggtggaa
gcctgggggaagcttcaaggagggtgtgggaatggaaaaggccttagtgt
ccctcactacaaacataacaaaatatcattaatagtgtcaggaaatggtg
ctctatccaaaaatcatacctcattacccaggatagatgttacttcagag
taaaagtgggggaaagatattgctaagaaatcacaagggagtaaatccat
ttaattatctacaaaatagacttcaaggcaagattaatcaaatagatggg
gaaaga
gaattctctggccggtcccgcagtgcagggagtccttggctcggtgggtg
tcaggcacagggaggccttctacaagagattattagatggctactcttta
taggcgaaggccttctccatgactccccatggccgatccccatgaaaaga
gacagttcatggttttaaggcatttattgtcatggaagaaagtggatgag
taaaaccataccccatttctcagggtggacgtgaggttaaataccttttg
tagggagtattatatgggaaggaaagcttattggaaaagccctctaggcc
tttaggtacctcatcaaaatggagatctgacttgagtctatgtgaccata
ggtcacatcctctacatgtggaggggattggggcattgaccttatatgac
tgatataccatctatctatgagggacttcggctagtgacagggacctggg
gcctggaaacaggcgaagcacctaccatccctttagggtctccaggactt
tgcacattagctctaccataaaccaagctacctttcatgtcccacacttg
gtgagtagggctgtcactccaaagacctcctgagagttcacacagggtac
ccagttgttctcatgagtggatagtggacaagaaggagagctctgtgcct
cacctggcattcctatccagaactatttattttctgtacttttctcacat
tgtcaaaattaaaatttttacctggtctacagagtgagttctaggacagc
caaggctatttcagagaaacctttgtctcaaaaaacaattatataatgaa
ctttatttgtatgtagttttcataatcactatgaaatcccacagacaagc
tgttatctgagaggtactaaatagggcaaagcaacatttcactctcctct
ccacatggaagtgtttgtccccctccagcaagacctagttatttctgtga
gttgagaggaccgagtcctgcaagagaaaccgggcggagaagggaagtaa
gaccaagcaagagttgtctagggtctgttttaatggaaggctcgaaaagc
cttgattataagcacaccaggtggagaggaaaataggggggagggggtgt
gagaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_22814106_22814748
seq2: B6Ng01-216E17.b_45_687 (reverse)

seq1  TGGAAAGTCCCAGGTAGAGTTCAAAAGTGCATCATGCTTGCTCACCAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTCCCAGGTAGAGTTCAAAAGTGCATCATGCTTGCTCACCAATA  50

seq1  GATTTAAAGGTCAATATGCTTACCCAATAAGTTTGAACTCTAACCTTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAGGTCAATATGCTTACCCAATAAGTTTGAACTCTAACCTTGCT  100

seq1  GATGTAACCTGTCCTCCCAAAAAGTATAAAAGCTGCTTGTAATAGCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAACCTGTCCTCCCAAAAAGTATAAAAGCTGCTTGTAATAGCCATT  150

seq1  CAAGGTCGCCTTCTAGTCACTCACATTAGGGACTAATTGAAGGTTGGCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTCGCCTTCTAGTCACTCACATTAGGGACTAATTGAAGGTTGGCCC  200

seq1  CAATTCCCCAGAAAATAAACCTTTCTTTTGCAAATGAAATAAAATAAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCCAGAAAATAAACCTTTCTTTTGCAAATGAAATAAAATAAACC  250

seq1  TTCTTTCTGAGATCTGCCTGTTGGGTGTCTTACTTGGGAACATCTCGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTGAGATCTGCCTGTTGGGTGTCTTACTTGGGAACATCTCGAAG  300

seq1  TAAGTACCACTGACCCAGGGTTGAGTTCTTATAGCAGTTCTTATAGTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACCACTGACCCAGGGTTGAGTTCTTATAGCAGTTCTTATAGTACA  350

seq1  TTTGCTTACAGTCACAACAATGAAATAGAATGATAGAGAAGCAGTTTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTACAGTCACAACAATGAAATAGAATGATAGAGAAGCAGTTTGTC  400

seq1  CTATGAGACTAGAAATGAAAATAGTTAAAGCCTAGTGTGTGTGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGACTAGAAATGAAAATAGTTAAAGCCTAGTGTGTGTGTGTGTGT  450

seq1  GTGTGTGTGTGTGTGCATGTGTCTGTGTTTGTTTAGGTGTGTCTGTGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGCATGTGTCTGTGTTTGTTTAGGTGTGTCTGTGTTA  500

seq1  TGGACAGGGACTGGAGCCTATTTTCACATATGCACCTGAGATTCCAGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGGGACTGGAGCCTATTTTCACATATGCACCTGAGATTCCAGTCT  550

seq1  CACTTCTTGCTGCCACAGCTGCATATTATCTTGGGGAGACACAAGGATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTTGCTGCCACAGCTGCATATTATCTTGGGGAGACACAAGGATGT  600

seq1  AATAGCTTTATACAGGGTTGGGATATTTTCTTGTACAGAATTC  643
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTTTATACAGGGTTGGGATATTTTCTTGTACAGAATTC  643

seq1: chr13_22652341_22653378
seq2: B6Ng01-216E17.g_114_1173

seq1  GTCAGGCACAGGGAGGCCTTCTACAAGAGATTATTAGATGGCTACTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCACAGGGAGGCCTTCTACAAGAGATTATTAGATGGCTACTCTTT  50

seq1  ATAGGCGAAGGCCTTCTCCATGACTCCCCATGGCCGATCCCCATGAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCGAAGGCCTTCTCCATGACTCCCCATGGCCGATCCCCATGAAAAG  100

seq1  AGACAGTTCATGGTTTTAAGGCATTTATTGTCATGGAAGAAAGTGGATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTTCATGGTTTTAAGGCATTTATTGTCATGGAAGAAAGTGGATGA  150

seq1  GTAAAACCATACCCCATTTCTCAGGGTGGACGTGAGGTTAAATACCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACCATACCCCATTTCTCAGGGTGGACGTGAGGTTAAATACCTTTT  200

seq1  GTAGGGAGTATTATATGGGAAGGAAAGCTTATTGGAAAAGCCCTCTAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAGTATTATATGGGAAGGAAAGCTTATTGGAAAAGCCCTCTAGGC  250

seq1  CTTTAGGTACCTCATCAAAATGGAGATCTGACTTGAGTCTATGTGACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGTACCTCATCAAAATGGAGATCTGACTTGAGTCTATGTGACCAT  300

seq1  AGGTCACATCCTCTACATGTGGAGGGGATTGGGGCATTGACCTTATATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACATCCTCTACATGTGGAGGGGATTGGGGCATTGACCTTATATGA  350

seq1  CTGATATACCATCTATCTATGAGGGACTTCGGCTAGTGACAGGGACCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATACCATCTATCTATGAGGGACTTCGGCTAGTGACAGGGACCTGG  400

seq1  GGCCTGGAAACAGGCGAAGCACCTACCATCCCTTTAGGGTCTCCAGGACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGAAACAGGCGAAGCACCTACCATCCCTTTAGGGTCTCCAGGACT  450

seq1  TTGCACATTAGCTCTACCATAAACCAAGCTACCTTTCATGTCCCACACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACATTAGCTCTACCATAAACCAAGCTACCTTTCATGTCCCACACTT  500

seq1  GGTGAGTAGGGCTGTCACTCCAAAGACCTCCTGAGAGTTCACACAGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGTAGGGCTGTCACTCCAAAGACCTCCTGAGAGTTCACACAGGGTA  550

seq1  CCCAGTTGTTCTCATGAGTGGATAGTGGACAAGAAGGAGAGCTCTGTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTGTTCTCATGAGTGGATAGTGGACAAGAAGGAGAGCTCTGTGCC  600

seq1  TCACCTGGCATTCCTATCCAGAACTATTTATTTTCTGTACTTTTCTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGGCATTCCTATCCAGAACTATTTATTTTCTGTACTTTTCTCACA  650

seq1  TTGTCAAAATTAAAATTTTTACCTGGTCTACAGAGTGAGTTCTAGGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAAATTAAAATTTTTACCTGGTCTACAGAGTGAGTTCTAGGACAG  700

seq1  CCAAGGCTA-TTCAGAGAAACC-TTGTCTCAAAAAACAATTATATAATGA  748
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  CCAAGGCTATTTCAGAGAAACCTTTGTCTCAAAAAACAATTATATAATGA  750

seq1  ACTTTATTTGTATGTAGTTTTCATAATCACTATGAAATCCCACAGACAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTTGTATGTAGTTTTCATAATCACTATGAAATCCCACAGACAAG  800

seq1  CTG-TATCTGAGAGGTACTAAATAGGGCAAAGCAACATTTCACTCTCCTC  847
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATCTGAGAGGTACTAAATAGGGCAAAGCAACATTTCACTCTCCTC  850

seq1  TCCACATGG-AGTG-TTGT-CCCCTCCAGCAAGACCTAGTTA-TTCTGTG  893
      ||||||||| |||| |||| |||||||||||||||||||||| |||||||
seq2  TCCACATGGAAGTGTTTGTCCCCCTCCAGCAAGACCTAGTTATTTCTGTG  900

seq1  AGTTGAGGAGGACCGAGTCCTGCAAGAGAAA-CGGGCGGAGAAAGGGAAG  942
      |||||| |||||||||||||||||||||||| ||||||||| ||||||||
seq2  AGTTGA-GAGGACCGAGTCCTGCAAGAGAAACCGGGCGGAG-AAGGGAAG  948

seq1  TAAGACCAAGCAAAGAGTTGTC-AAGGTCTG-TTTAATGG-AGGCT--GA  987
      ||||||||||| |||||||||| | |||||| |||||||| |||||   |
seq2  TAAGACCAAGC-AAGAGTTGTCTAGGGTCTGTTTTAATGGAAGGCTCGAA  997

seq1  GAGCC-TGATTATAAGCACA-CAG--TGAGA-GAAAATA---GGGAGGGG  1029
       |||| |||||||||||||| |||   |||| |||||||   ||||||||
seq2  AAGCCTTGATTATAAGCACACCAGGTGGAGAGGAAAATAGGGGGGAGGGG  1047

seq1  TT----GAGGGGG  1038
       |    |||||||
seq2  GTGTGAGAGGGGG  1060