BAC Information

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BAC

Clone NameB6Ng01-216N04
Chromosome13 (Build37)10 (Build37)
Map Location 88,182,091 - 88,183,21737,756,429 - 37,756,743
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC675707
Downstream geneLOC667230, EG435375, Edil3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216N04.bB6Ng01-216N04.g
ACCGA033411GA033412
length1,135990
definitionB6Ng01-216N04.b B6Ng01-216N04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,182,091 - 88,183,217)(37,756,429 - 37,756,743)
sequence
gaattcatattcttttgagtcttaattctaataacttattttacgatata
taagtatttttctgaagcaaactaatatattaattcatataactctatat
tattctataaatgtttgcatacatataatgtataagtatgtaacatatat
atttgttttagttggtacatacaagtgtttttacagacatatttagctgt
ttaattttcaaaaattaatagaacactaaatattgatgtaattcttacta
attttaaatatttctttagggatactaaattgtcaatattttctcaaata
tatgctaaacattgtgtaagttgggtgttattatttcatactactaggtt
gaatttgcatttaaaatatattctattattaaatatacattcactttata
atgtcatcttaaattctatattttgcttcaaaagtatgttttcattttag
ttatttgtaggtactggaattaagtgaaaaataagtgatgcaataaatta
cttcttttcctactttaaaaatttaatacatacttataaatgaatacgct
ttatgattttaagcaattaacagattattgatctggaaattgttatcaaa
tgcaaattacaacttgaagtttactcagatatttaattcattatttcaaa
agtgttagtggataattctttatccactgatctaaatgagactttagtat
aacgctaacaatttcagaccattatcatgctacttaattactatggtttt
ctaggttttaatttcttgtgaagtcttacttcttaataattttatgcttc
aaaaccttcttcatgattcttacataattatatatcataatgacacataa
ttatcaattttcagatacttacatacatgaaaattttattttattttact
tttcatttaaaattcttattcacttgggaggaaattttagttttataatt
tattcttcacacattaaattttataacaggctcttttttaataccactac
cttggtaacattccatggaggtctcaaatagaggtatcatttataccagg
tttatgcagcaataatctcatgatggtcacttggtatgaatactgaaaaa
taagcaatttaaaagtcacacctcattgggtatgt

gaattcagcatcaggtcaacacctgttcagcctatctgcatcccctcaaa
tgtacctgctgcaataagagtgtccaaaaaactgtgtacctagtgctagc
attgatgcagttagttacttaccaccatgcatgatattgttatttccctt
ccattttctgtagagcttcacccaaggcattgtttctcaatgggttctcc
tgttttcaagccctatattggctgccacctttagtagtctaatggtcatg
gaaaaactgggttaacctgaaatgggggcagaaaaggaaaaagaacaggg
tgcaagagaaggatgaagccaagacaaaagttctgatcaaggctcaaagt
ttaatattcagcattgcatttatatatatggaaagcccacagactacgtt
ctttgttcacctggattatgttgcaaagcaagctcagcaggcagtctact
cctgtaggaaattgcaaattcagctgagtgtggaggtcaaaaagccattg
tggcagggaatcaaggtctgtttatcctactcaagggaagggcacaatcc
tgccatagcaaggcctgaatacactatcacactcgacagaaagattcaga
tttaaaatcacttctcatggtaattgtgatagaggaattcaagaagaaca
taaataattcccttaaagaaatagaggagaactcagggaaacaggttgaa
attcttaaagagaaaacaaacaaacaaaaatattgcttaaagaattaaaa
gaaaacacaagcaaagaagaggtgaatgaattgaaaaaaccatccaggat
ctgaaaatggaagtagaaacaataaagaagtcataaagggagacaaccct
ggagaaagaaaagctaggaaaagaacatgagccatagatgcaagaatcac
taacacaatactagagatagaagagagaatctcagtgcagagataccata
gaaaacatgacaaaactggccaggaaaatgcaaactgcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_88182091_88183217
seq2: B6Ng01-216N04.b_45_1179

seq1  GAATTCATATTCTTTTGAGTCTTAATTCTAATAACTTATTTTACGATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTCTTTTGAGTCTTAATTCTAATAACTTATTTTACGATATA  50

seq1  TAAGTATTTTTCTGAAGCAAACTAATATATTAATTCATATAACTCTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTTTTCTGAAGCAAACTAATATATTAATTCATATAACTCTATAT  100

seq1  TATTCTATAAATGTTTGCATACATATAATGTATAAGTATGTAACATATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATAAATGTTTGCATACATATAATGTATAAGTATGTAACATATAT  150

seq1  ATTTGTTTTAGTTGGTACATACAAGTGTTTTTACAGACATATTTAGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTTAGTTGGTACATACAAGTGTTTTTACAGACATATTTAGCTGT  200

seq1  TTAATTTTCAAAAATTAATAGAACACTAAATATTGATGTAATTCTTACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTCAAAAATTAATAGAACACTAAATATTGATGTAATTCTTACTA  250

seq1  ATTTTAAATATTTCTTTAGGGATACTAAATTGTCAATATTTTCTCAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATATTTCTTTAGGGATACTAAATTGTCAATATTTTCTCAAATA  300

seq1  TATGCTAAACATTGTGTAAGTTGGGTGTTATTATTTCATACTACTAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAAACATTGTGTAAGTTGGGTGTTATTATTTCATACTACTAGGTT  350

seq1  GAATTTGCATTTAAAATATATTCTATTATTAAATATACATTCACTTTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGCATTTAAAATATATTCTATTATTAAATATACATTCACTTTATA  400

seq1  ATGTCATCTTAAATTCTATATTTTGCTTCAAAAGTATGTTTTCATTTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATCTTAAATTCTATATTTTGCTTCAAAAGTATGTTTTCATTTTAG  450

seq1  TTATTTGTAGGTACTGGAATTAAGTGAAAAATAAGTGATGCAATAAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGTAGGTACTGGAATTAAGTGAAAAATAAGTGATGCAATAAATTA  500

seq1  CTTCTTTTCCTACTTTAAAAATTTAATACATACTTATAAATGAATACGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTTCCTACTTTAAAAATTTAATACATACTTATAAATGAATACGCT  550

seq1  TTATGATTTTAAGCAATTAACAGATTATTGATCTGGAAATTGTTATCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGATTTTAAGCAATTAACAGATTATTGATCTGGAAATTGTTATCAAA  600

seq1  TGCAAATTACAACTTGAAGTTTACTCAGATATTTAATTCATTATTTCAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAATTACAACTTGAAGTTTACTCAGATATTTAATTCATTATTTCAAA  650

seq1  AGTGTTAGTGGATAATTCTTTATCCACTGATCTAAATGAGACTTTAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTAGTGGATAATTCTTTATCCACTGATCTAAATGAGACTTTAGTAT  700

seq1  AACGCTAACAATTTCAGACCATTATCATGCTACTTAATTACTATGGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTAACAATTTCAGACCATTATCATGCTACTTAATTACTATGGTTTT  750

seq1  CTAGGTTTTAATTTCTTGTGAAGTCTTACTTCTTAATAATTTTATGCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTTTAATTTCTTGTGAAGTCTTACTTCTTAATAATTTTATGCTTC  800

seq1  AAAACCTTCTTCATGATTCTTACATAATTATATATCATAATGACACATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTCTTCATGATTCTTACATAATTATATATCATAATGACACATAA  850

seq1  TTATCAATTTTCAGATACTTACATACATGAAAATTTTATTTTATTTTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAATTTTCAGATACTTACATACATGAAAATTTTATTTTATTTTACT  900

seq1  TTTCATTTAAAATTCTTATTCACTT-GGAGGAAATTTTAGTTTTATAATT  949
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTCATTTAAAATTCTTATTCACTTGGGAGGAAATTTTAGTTTTATAATT  950

seq1  TATTCTTCACACATT-AATTTTATAACA-GCTCTTTTTTAATA-CACTAC  996
      ||||||||||||||| |||||||||||| |||||||||||||| ||||||
seq2  TATTCTTCACACATTAAATTTTATAACAGGCTCTTTTTTAATACCACTAC  1000

seq1  CTTTGTAACATTCCAT-GAGTCTTCAAATAGAGTTATCATTTATTACCAG  1045
      ||| |||||||||||| |||   |||||||||| ||||||||| ||||||
seq2  CTTGGTAACATTCCATGGAGGTCTCAAATAGAGGTATCATTTA-TACCAG  1049

seq1  TATTATGCAGCATAATTCTCATGAT-GTCACCTTGTAATGATTACTGAAA  1094
        ||||||||||  | ||||||||| |||| ||||  |||| ||||||||
seq2  GTTTATGCAGCAATAATCTCATGATGGTCA-CTTGGTATGAATACTGAAA  1098

seq1  A--TAGC-ATTTAAAAGTCACAACTCATT-GGTATGT  1127
      |   ||| |||||||||||||| |||||| |||||||
seq2  AATAAGCAATTTAAAAGTCACACCTCATTGGGTATGT  1135


seq1: chr10_37756429_37756743
seq2: B6Ng01-216N04.g_70_393

seq1  TCAGCATCAGGTCAACACCTGTCCAACCTAGCTATATCC---TTAGTGAA  47
      |||||||||||||||||||||| || |||| ||  ||||     | || |
seq2  TCAGCATCAGGTCAACACCTGTTCAGCCTATCTGCATCCCCTCAAATGTA  50

seq1  CCTCCTGCAACAACTCCCTCCAAAAA----TTAAGCTAGTACTGACATTA  93
      ||| |||||| ||     ||||||||    |  | ||||| ||  |||| 
seq2  CCTGCTGCAATAAGAGTGTCCAAAAAACTGTGTACCTAGTGCTAGCATTG  100

seq1  ATGCTGTTCATTACTT---ACTGTGCAGGATACTGTAACTT--CTTCCAT  138
      |||| |||  ||||||   ||  |||| |||| ||| | ||  |||||||
seq2  ATGCAGTTAGTTACTTACCACCATGCATGATATTGTTATTTCCCTTCCAT  150

seq1  TCTCTCTGGAGTTTCACCCAAGATGGTGCTTCTCAGTGGGTCCTCCACCC  188
      | ||| | ||| ||||||||||    || |||||| ||||| ||||    
seq2  TTTCTGTAGAGCTTCACCCAAGGCATTGTTTCTCAATGGGTTCTCC-TGT  199

seq1  TTTTAAGTCCCCTAGTTCGGGTACTACCTGTATCCATCCAGCAGCCAAGG  238
      ||| |||  |||||  | || | | |||| ||    || |   | || ||
seq2  TTTCAAG--CCCTATATTGGCTGCCACCTTTAGTAGTCTAATGGTCATGG  247

seq1  ATGAATTAGGTT-ACCTGAAAAGGGGGCTGGAAATGAAAAAGGATCAGGG  287
      |  || | |||| |||||||| |||||| | ||| |||||| || |||||
seq2  AAAAACTGGGTTAACCTGAAATGGGGGCAGAAAAGGAAAAA-GAACAGGG  296

seq1  TGCAAGAGAAGGATTAAATCAAGACAAA  315
      |||||||||||||| ||  |||||||||
seq2  TGCAAGAGAAGGATGAAGCCAAGACAAA  324


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