BAC Information

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BAC

Clone NameB6Ng01-217A15
Chromosome13 (Build37)
Map Location 25,288,125 - 25,495,785
singlet/doubletdoublet
Overlap geneNrsn1
Upstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l, LOC675430, Dcdc2a
Downstream geneTpi-rs8, LOC214973, LOC666221
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217A15.bB6Ng01-217A15.g
ACCGA033567GA033568
length859732
definitionB6Ng01-217A15.b B6Ng01-217A15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,494,904 - 25,495,785)(25,288,125 - 25,288,855)
sequence
gaattcaatcaaggttggcttatgctacataatatgttcaaccctaggct
agggtgagagttagcccccatctcaaaataacagctgagaattcttccat
ggtccttttaaacaaagctcctggtgggaaaaaacatgtgtgcctccaac
cagtgtttatggagatacaccaggctcccacaatgccttaggtttcactc
cttgtttatttgagaaaaactgcaagccatccattcaggttaaaaagaca
tcactgaggaatgtaggagtggtagctgtatagcagcttactctggccct
ctgcttaatctagggccttgtttaaaggagcttttcaattttaattaaaa
tgagatgggccctggaagactacacatctcatccagcaaggatcatatgg
ggcttgttctttgtaatttcacccatcatgctgcaggttgttgctttttt
ccacagttcttaaatggtgtctaaattgaccagttctgttgccaaggcaa
cggacaggacaatgctaatagaagtacttaggacacactgtgaaaagctt
agaaataaaattgtttgacatgaaaggcactgtgtcagcagccaggcgac
tctgttaaaggctagactgagcaggagatggtcccatgccctccctgact
cctcttaaaaatctcttctagaaaatagattttgtcctaagagtcttgac
agctttttctatcagaatcgcttagatttttagctcaaagtagagaaaaa
aaatctttatgttgtggtttccaagtatccagctagacatgaggcccagg
caaatgaatctgtcccttttctctctctctctctctctctctctctctct
ctctctctc
gaattctgccttcttccatatctgcaaattaggataataacagtattatt
cttgaatcgttgttgaaggttaatgtgaatgccattatgcatatgagatg
catagaacatgacaccaggcgccaggagagagcttgataaatgtgcgtct
ctctcctcttcatcagcgcgctcccaaggcgattgttacccctttacctc
attaaagactatgaacatcatcactagtctgccacagtgggtttagaaat
ggataagagaaggcctctgttgaatgatttccaggggtctccacagagga
gactgtcatttctctcatcgttccacaatcatgccagtatctgggaggtg
ggaagaggctctttttctggttagcaatttgtgttcgctaattttgtatg
acctacaattagatgattagagagtcctaaaggaatcaataaatacgtgg
agagggtgcctagcagtgagtgattccacctggaggagccaggtagcttc
ctggagcggttgtgctaattgtgggaaagatgcactatccatgtacagac
ataaggaacagtttggatactggttgtacaggggagtggactaaggattt
tttctgtgtgtgtttctttctcagaggattctcctcacattaaatttcaa
tctgggaaaggctccatttatccttctcaattaagggatctctctctttc
tctctctctctctctctctctctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_25494904_25495785
seq2: B6Ng01-217A15.b_48_906 (reverse)

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  50
                            ||||||||||||||||||||||||||||
seq2  ----------------------GAGAGAGAGAGAGAGAGAGAGAGAGAGA  28

seq1  GAGAGAGAGAGAGAAAGGGACAGATTCATTTGCCTGGGCCTCATGTCTAG  100
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGA-AAAGGGACAGATTCATTTGCCTGGGCCTCATGTCTAG  77

seq1  CTGGATACTTGGAAACCACAACATAAAGATTTTTTTTCTCTACTTTGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATACTTGGAAACCACAACATAAAGATTTTTTTTCTCTACTTTGAGC  127

seq1  TAAAAATCTAAGCGATTCTGATAGAAAAAGCTGTCAAGACTCTTAGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATCTAAGCGATTCTGATAGAAAAAGCTGTCAAGACTCTTAGGACA  177

seq1  AAATCTATTTTCTAGAAGAGATTTTTAAGAGGAGTCAGGGAGGGCATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTATTTTCTAGAAGAGATTTTTAAGAGGAGTCAGGGAGGGCATGGG  227

seq1  ACCATCTCCTGCTCAGTCTAGCCTTTAACAGAGTCGCCTGGCTGCTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCCTGCTCAGTCTAGCCTTTAACAGAGTCGCCTGGCTGCTGACA  277

seq1  CAGTGCCTTTCATGTCAAACAATTTTATTTCTAAGCTTTTCACAGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCTTTCATGTCAAACAATTTTATTTCTAAGCTTTTCACAGTGTGT  327

seq1  CCTAAGTACTTCTATTAGCATTGTCCTGTCCGTTGCCTTGGCAACAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGTACTTCTATTAGCATTGTCCTGTCCGTTGCCTTGGCAACAGAAC  377

seq1  TGGTCAATTTAGACACCATTTAAGAACTGTGGAAAAAAGCAACAACCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCAATTTAGACACCATTTAAGAACTGTGGAAAAAAGCAACAACCTGC  427

seq1  AGCATGATGGGTGAAATTACAAAGAACAAGCCCCATATGATCCTTGCTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGATGGGTGAAATTACAAAGAACAAGCCCCATATGATCCTTGCTGG  477

seq1  ATGAGATGTGTAGTCTTCCAGGGCCCATCTCATTTTAATTAAAATTGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGTGTAGTCTTCCAGGGCCCATCTCATTTTAATTAAAATTGAAA  527

seq1  AGCTCCTTTAAACAAGGCCCTAGATTAAGCAGAGGGCCAGAGTAAGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTTAAACAAGGCCCTAGATTAAGCAGAGGGCCAGAGTAAGCTGC  577

seq1  TATACAGCTACCACTCCTACATTCCTCAGTGATGTCTTTTTAACCTGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGCTACCACTCCTACATTCCTCAGTGATGTCTTTTTAACCTGAAT  627

seq1  GGATGGCTTGCAGTTTTTCTCAAATAAACAAGGAGTGAAACCTAAGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGCTTGCAGTTTTTCTCAAATAAACAAGGAGTGAAACCTAAGGCAT  677

seq1  TGTGGGAGCCTGGTGTATCTCCATAAACACTGGTTGGAGGCACACATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGAGCCTGGTGTATCTCCATAAACACTGGTTGGAGGCACACATGTT  727

seq1  TTTTCCCACCAGGAGCTTTGTTTAAAAGGACCATGGAAGAATTCTCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCACCAGGAGCTTTGTTTAAAAGGACCATGGAAGAATTCTCAGCT  777

seq1  GTTATTTTGAGATGGGGGCTAACTCTCACCCTAGCCTAGGGTTGAACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTGAGATGGGGGCTAACTCTCACCCTAGCCTAGGGTTGAACATA  827

seq1  TTATGTAGCATAAGCCAACCTTGATTGAATTC  882
      ||||||||||||||||||||||||||||||||
seq2  TTATGTAGCATAAGCCAACCTTGATTGAATTC  859

seq1: chr13_25288125_25288855
seq2: B6Ng01-217A15.g_69_800

seq1  GAATTCTGCCTTCTTCCATATCTGCAAATTAGGATAATAACAGTATTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCTTCTTCCATATCTGCAAATTAGGATAATAACAGTATTATT  50

seq1  CTTGAATCGTTGTTGAAGGTTAATGTGAATGCCATTATGCATATGAGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCGTTGTTGAAGGTTAATGTGAATGCCATTATGCATATGAGATG  100

seq1  CATAGAACATGACACCAGGCGCCAGGAGAGAGCTTGATAAATGTGCGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAACATGACACCAGGCGCCAGGAGAGAGCTTGATAAATGTGCGTCT  150

seq1  CTCTCCTCTTCATCAGCGCGCTCCCAAGGCGATTGTTACCCCTTTACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTCTTCATCAGCGCGCTCCCAAGGCGATTGTTACCCCTTTACCTC  200

seq1  ATTAAAGACTATGAACATCATCACTAGTCTGCCACAGTGGGTTTAGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGACTATGAACATCATCACTAGTCTGCCACAGTGGGTTTAGAAAT  250

seq1  GGATAAGAGAAGGCCTCTGTTGAATGATTTCCAGGGGTCTCCACAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGAGAAGGCCTCTGTTGAATGATTTCCAGGGGTCTCCACAGAGGA  300

seq1  GACTGTCATTTCTCTCATCGTTCCACAATCATGCCAGTATCTGGGAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCATTTCTCTCATCGTTCCACAATCATGCCAGTATCTGGGAGGTG  350

seq1  GGAAGAGGCTCTTTTTCTGGTTAGCAATTTGTGTTCGCTAATTTTGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGGCTCTTTTTCTGGTTAGCAATTTGTGTTCGCTAATTTTGTATG  400

seq1  ACCTACAATTAGATGATTAGAGAGTCCTAAAGGAATCAATAAATACGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAATTAGATGATTAGAGAGTCCTAAAGGAATCAATAAATACGTGG  450

seq1  AGAGGGTGCCTAGCAGTGAGTGATTCCACCTGGAGGAGCCAGGTAGCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGTGCCTAGCAGTGAGTGATTCCACCTGGAGGAGCCAGGTAGCTTC  500

seq1  CTGGAGCGGTTGTGCTAATTGTGGGAAAGATGCACTATCCATGTACAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCGGTTGTGCTAATTGTGGGAAAGATGCACTATCCATGTACAGAC  550

seq1  ATAAGGAACAGTTTGGATACTGGTTGTACAGGGGAGTGGACTAAGGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAACAGTTTGGATACTGGTTGTACAGGGGAGTGGACTAAGGATTT  600

seq1  TTTCTGTGTGTGTTTCTTTCTCAGAGGATTCTCCTCACATTAAATTTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTGTGTTTCTTTCTCAGAGGATTCTCCTCACATTAAATTTCAA  650

seq1  TCTGGGAAAGGCTCCATTTATCCTTCTCAATTAA-GGATCTCTCTCTTTC  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TCTGGGAAAGGCTCCATTTATCCTTCTCAATTAAGGGATCTCTCTCTTTC  700

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  731
      ||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  732