BAC Information

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BAC

Clone NameB6Ng01-218N06
Chromosome13 (Build37)
Map Location 62,481,571 - 62,482,745
singlet/doubletsinglet
Overlap geneLOC100041979
Upstream geneCts7-ps, EG624056, LOC665717, Ctsm, Cts3, EG665401, LOC624140, EG623505, LOC665415, LOC673332, BC052688, EG638502, LOC100041382, EG633250, EG624180, LOC100041420, LOC665444, EG630579, EG630594, LOC665455, LOC100041430, LOC100041962, LOC100041437
Downstream geneLOC100041986, 8430426H19Rik, LOC100041455, 6720457D02Rik, EG665503, LOC100041493, LOC630857, EG630978, EG435366, LOC380850, LOC630951, Fbp2, Fbp1, LOC100042090, EG665524, 2010111I01Rik, Fancc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218N06.bB6Ng01-218N06.g
ACCGA034853GA034854
length1,1491,105
definitionB6Ng01-218N06.b B6Ng01-218N06.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccacatatggtgtcatcaataagtccttttaggttcagcccccag
gttatactttgaacaatttaatggcggacaggaccttgcaagtttagcca
ctgaggccaatggagatttacagagcaaaactatcttctagtccataatg
taagatatagaaaagagttttaaaagatagatccatgccacaactctgcc
atgcataaaggacagagaacacacacacagaaaatatcaagaaaacatca
cctaacagcactgtagttacagttctaatatgaacatgcctgctgatctt
ttctaacctcagaataagactgtttgaaggttctgccccactcacccacc
catccatccacccatccatctatccattcattcatctaaggcaacttttt
aaactgtttaacttggggcaggagagatggctcagcacatctggaaactg
gttctcacccatccaaaggaagtgcccacttccccagcttcaaatattca
tgcccctgctctttcaggttagcatagagctgaacctccattatggcaga
gagtactcagaagaaccctcctattatcctgattggcctgcctggacgcc
ctgattggccagtgattcttgagtgacataagcatgcttcttagggttgg
agtgtgctgaaggcacacattatacaccttcaatgctcaggattctagtt
caggaactttgaaagtagtgtagtcacagcccagaaagggtcaggacaaa
aggaagtagataacttcactgctttgacagtatgtaatattgagaatgaa
cagtgagggctggcgagatggctcatcaggtaagagcactaactgttctt
ccgaaggtcctgagttcaaatcccagaaaccacatggtggctcacaacca
ccagtaatgagatctgatgccctcttctggtgtgtcagctacagtgtact
tatgtgtataataaataaatcttaaaaaaagaaaagaaaagatgaacagt
gaggcaatcattttagaccatcgacagagtctgactgaccattttgggtc
acacacagcatcagatctgataaaatttgactgcaacttagatactacat
gacttctacaaatcctattaccgaatcttacgtatacatgtgccatcga
gaattcagaactagactgtatgtatcactctattaagaatttaactaaaa
acctatgagttctttctaactttctggttaggttgatgaactctggcaag
ggacagttcgtacactgaacctttgtctgtcctagaactcacactggcgt
ccaactcaatgtgatacatcttcctctgtcccctgactgcagttataact
acaaaaggcagtagacccagcatgcttactgatttttatgtttagtaatt
gttattgttactacaatttctttgatgtgtggtaagcactattgatcttg
tagagcttgtctcctctttatatctgtaactgacatttctctagaaaggc
tacatcctattcaaagggctgagaaatgacagaggtgaacttcattatta
agttaccttctaatatgactaggtagttaaagtagaagttcggtgtcagt
aaataagtggagtaggccccagagttatatgaacacattgcctgcgaata
atacatgcccgatgttgtttctattgtgcttttttgtgtacacgtttatg
ggatgctctagaatgcagtgacttatgaggacgtgcatgtgaacttcact
caagaggagtgggctctgcttgatccttctcagaagaagctctacaaaga
tgtcatgctggagacctacaggaacctcaacgctataggtaagactatga
attccctttcctgttttttttttttttttttttttttttttttttttggt
ttttcgaggacagggttttctcttgttttagcccctggctgtcctggaac
tcacttctgtagaccaggctggccttgaactcagaaaatccgcctgtcct
cctgcctcccgagtggctggggattaaaaggcgttgcgccaccacgcccg
gctcccttttccttgttttaaactgggaaaaacagtttcttttttttgat
gcacatctgtaatttccatagagatggacgaaggatttgtgataatcatg
cattatcctagttcaataaagaaagtaacttatatttttacctaattcac
aataccttcgtactctatttaggaattaattggactcaaaatttcagaac
attgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_62481571_62482745
seq2: B6Ng01-218N06.b_42_1190

seq1  GAATTCCACATATGGTGTCATCAATAAGTCCTTTTAGGTTCAGCCCCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATATGGTGTCATCAATAAGTCCTTTTAGGTTCAGCCCCCAG  50

seq1  GTTATACTTTGAACAATTTAATGGCGGACAGGACCTTGCAAGTTTAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATACTTTGAACAATTTAATGGCGGACAGGACCTTGCAAGTTTAGCCA  100

seq1  CTGAGGCCAATGGAGATTTACAGAGCAAAACTATCTTCTAGTCCATAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCCAATGGAGATTTACAGAGCAAAACTATCTTCTAGTCCATAATG  150

seq1  TAAGATATAGAAAAGAGTTTTAAAAGATAGATCCATGCCACAACTCTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATAGAAAAGAGTTTTAAAAGATAGATCCATGCCACAACTCTGCC  200

seq1  ATGCATAAAGGACAGAGAACACACACACAGAAAATATCAAGAAAACATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAAAGGACAGAGAACACACACACAGAAAATATCAAGAAAACATCA  250

seq1  CCTAACAGCACTGTAGTTACAGTTCTAATATGAACATGCCTGCTGATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACAGCACTGTAGTTACAGTTCTAATATGAACATGCCTGCTGATCTT  300

seq1  TTCTAACCTCAGAATAAGACTGTTTGAAGGTTCTGCCCCACTCACCCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAACCTCAGAATAAGACTGTTTGAAGGTTCTGCCCCACTCACCCACC  350

seq1  CATCCATCCACCCATCCATCTATCCATTCATTCATCTAAGGCAACTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCACCCATCCATCTATCCATTCATTCATCTAAGGCAACTTTTT  400

seq1  AAACTGTTTAACTTGGGGCAGGAGAGATGGCTCAGCACATCTGGAAACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTTTAACTTGGGGCAGGAGAGATGGCTCAGCACATCTGGAAACTG  450

seq1  GTTCTCACCCATCCAAAGGAAGTGCCCACTTCCCCAGCTTCAAATATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCACCCATCCAAAGGAAGTGCCCACTTCCCCAGCTTCAAATATTCA  500

seq1  TGCCCCTGCTCTTTCAGGTTAGCATAGAGCTGAACCTCCATTATGGCAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTGCTCTTTCAGGTTAGCATAGAGCTGAACCTCCATTATGGCAGA  550

seq1  GAGTACTCAGAAGAACCCTCCTATTATCCTGATTGGCCTGCCTGGACGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTCAGAAGAACCCTCCTATTATCCTGATTGGCCTGCCTGGACGCC  600

seq1  CTGATTGGCCAGTGATTCTTGAGTGACATAAGCATGCTTCTTAGGGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTGGCCAGTGATTCTTGAGTGACATAAGCATGCTTCTTAGGGTTGG  650

seq1  AGTGTGCTGAAGGCACACATTATACACCTTCAATGCTCAGGATTCTAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGCTGAAGGCACACATTATACACCTTCAATGCTCAGGATTCTAGTT  700

seq1  CAGGAACTTTGAAAGTAGTGTAGTCACAGCCCAGAAAGGGTCAGGACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTTTGAAAGTAGTGTAGTCACAGCCCAGAAAGGGTCAGGACAAA  750

seq1  AGGAAGTAGATAACTTCACTGCTTTGACAGTATGTAATATTGAGAATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTAGATAACTTCACTGCTTTGACAGTATGTAATATTGAGAATGAA  800

seq1  CAGTGAGGGCTGGCGAGATGGCTCATCAGGTAAGAGCACTAACTGTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGGGCTGGCGAGATGGCTCATCAGGTAAGAGCACTAACTGTTCTT  850

seq1  CCGAAGGTCCTGAGTTCAAATCCCAGAAACCACATGGTGGCTCACAACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAAGGTCCTGAGTTCAAATCCCAGAAACCACATGGTGGCTCACAACCA  900

seq1  CCAGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCAGCTACAGTGTACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCAGCTACAGTGTACT  950

seq1  TATGTGTAATAATAAATAAATCTTAAAAAAAGAAAAGAAAAGAATGAACA  1000
      ||||||| |||||||||||||||||||||||||||||||||| |||||||
seq2  TATGTGT-ATAATAAATAAATCTTAAAAAAAGAAAAGAAAAG-ATGAACA  998

seq1  GTGAGGCAATCAATTTTAGACCATCGACAAGAGTCTGACTGGCCCATTTT  1050
      ||||||||||| |||||||||||||||| ||||||||||| | |||||||
seq2  GTGAGGCAATC-ATTTTAGACCATCGAC-AGAGTCTGACT-GACCATTTT  1045

seq1  TGGGGTC-CACACACCAGGCAATCAAGAATCTGAATAAAAATTTGAACTG  1099
        ||||| |||||| |     ||||   ||||||   |||||||| ||||
seq2  --GGGTCACACACAGC-----ATCA--GATCTGA--TAAAATTTG-ACTG  1083

seq1  CAAAACTAAGATACTACATGACTCCTACCAAATACATTATATTACCAAAT  1149
      |  |||| ||||||||||||||| ||| ||||| |    ||||||| |||
seq2  C--AACTTAGATACTACATGACTTCTA-CAAATCC----TATTACCGAAT  1126

seq1  C-TACGTAATACAATGTGGCCCATCGA  1175
      | ||||| |||| |||||  |||||||
seq2  CTTACGT-ATAC-ATGTG--CCATCGA  1149