BAC Information

Click to search

BAC

Clone NameB6Ng01-219I01
Chromosome13 (Build37)
Map Location 34,275,764 - 34,385,314
singlet/doubletdoublet
Overlap gene3110004L20Rik
Upstream geneSerpinb9d, Serpinb9e, Serpinb9f, OTTMUSG00000000724, Serpinb9g, LOC100041370, EG619715, LOC382743, OTTMUSG00000000712, LOC193403, Vmn2r-ps94, OTTMUSG00000000720, Serpinb6c, Serpinb6a, Nqo2, 4930482L21Rik, Ripk1, Bphl, Tubb2a, LOC100042686, Tubb2b, 2310047M15Rik
Downstream geneLOC620132, EG666666, 1300014I06Rik, D0H6S2654E, EG432746, LOC666677, Prpf4b, 4933417A18Rik, LOC666697, 1810022C23Rik, Peci
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219I01.bB6Ng01-219I01.g
ACCGA035322GA035323
length1,1601,064
definitionB6Ng01-219I01.b B6Ng01-219I01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,275,764 - 34,276,921)(34,384,263 - 34,385,314)
sequence
gaattcctgcaactttgagctcagatgggccaaagtcaaagtgtgagtca
tttatctctattcctctgccaagtgaggaacccttgagaagacacgtaac
attttagcacccctcctttcgtgtctctatcttctctactttgacatgaa
aacattccaggggctgaggtgctctgtaggtactaagaaagaggtacagt
gttggggtgagaccatagtgttcaggtaatgggccagaaaactgcctggt
ccccagtccccaggcccaagggacagattgaggtggttttatcttcagaa
ggaggaatacagtagcctgcctacctgtaagaacatcagggagaatatac
agggatgtggacttcaggaacaaccaggtctttccacctatggtaagtgg
atttcaacaaagacacacaccatggggcaaagggcagctgtacaacaagc
agtgttggtgcagcagggtagtttgagtgcaaacgaatgaaggcagagcc
cccttcataaggcacaaaataaactgagtcccagaaaacatcagggaaga
ttgttgtgactttgggtcacctgggatttcttacaaatgcagccacagca
cagaagctgaccagctagacttaatcaaaattaataggtttttaaaaaac
ccttcagaagacataattcagaagtagaagccacacagccaggggcagat
gcttccaaagcctgcctctgacaaaggatatgtcctattgaactcaactt
ggcttcaaaacacctttgagaaagcctggagtaaagacagaacaacatgt
tggtgagatcctagaggggctggagttctccaatagcctcctgggagcag
gatggaaaacaggtagacattctcttgaaaggaaacaattttttatatag
ctagcaattccatgtacaaaacaagtaaaaccatatgcacagacaaacat
ttacaagcaaatgtttatgccttatagcactgggaacatccaatgtctat
cggctgttgagtgataaaataaaatgtgcatatccagatataatgcaata
ttgcttaagccttcaggccatgagaaacactgacatgtttacaccatgaa
attgttggtaccattccatttcacatgaatgtctgagattcttgatctaa
gagaacagaa
gaattcacagattgaaggctatcagtcatcctgcagccaaagtgtgaaaa
gcaaagcaataaatacatcagcgaaagaaggaagagaggaggaggaagaa
gaagagggatggagacaggtatgatgggtcctgcctgtattcccagaact
tgggagcttgagatagaatggtcgtcaaaagttcaaggctaacctgaact
gcctgagctataaaatgagaacctatctcaaaaaattaaaagatgaaact
ggagcatttgcctctaaatctttttttctgacctgcttctgagcatcgga
gttccttgtgtcacaatgcagtggtgagtagtaatagatgtggctggtaa
tgaagtccctgtgtggccaggatgctgtagtacagggcaggtggtcagtg
aactctccaacagggagctgtgctttgatacctatgactgcttttttctt
aaactatatcagtccttcggacaaaaagtacttttaaaggcctgtaaagc
atggacagatgtgctgtgccttctgcatgctaagaatgccaacacgaggc
ctccctgagaaccatatgcctcatcttagaagacaaaaacatgcagtgac
tgcctaaatgtatagataggttaaagtgcttggttactaggggcctttca
atttggtaaggatcgatacatctcagaatcagaggaggaaaagcaaaacc
agcaaatattttggccctttggcatttgaaaattataaggtttagctgaa
attctctgcagagtaaacagccttattaaattgtatggttccttactcgg
ccaagttttgtcatgttggaattctaatgctgcctctctacttttgaaac
aaaactgtcttacagcagaagaatccatagattgatctagaaatcgatag
atttgagctgtggcttgagtccctcagattgactgttgacacaatagaat
gactgaaatttctgtcgactttctagtctcttcatctgaaattatgaagg
tgaatttttcttaggtgttcaagcataaggacccactcctgaaatcaaat
ggggtggtgctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_34275764_34276921
seq2: B6Ng01-219I01.b_44_1203

seq1  GAATTCCTGCAACTTTGAGCTCAGATGGGCCAAAGTCAAAGTGTGAGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCAACTTTGAGCTCAGATGGGCCAAAGTCAAAGTGTGAGTCA  50

seq1  TTTATCTCTATTCCTCTGCCAAGTGAGGAACCCTTGAGAAGACACGTAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCTATTCCTCTGCCAAGTGAGGAACCCTTGAGAAGACACGTAAC  100

seq1  ATTTTAGCACCCCTCCTTTCGTGTCTCTATCTTCTCTACTTTGACATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAGCACCCCTCCTTTCGTGTCTCTATCTTCTCTACTTTGACATGAA  150

seq1  AACATTCCAGGGGCTGAGGTGCTCTGTAGGTACTAAGAAAGAGGTACAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCCAGGGGCTGAGGTGCTCTGTAGGTACTAAGAAAGAGGTACAGT  200

seq1  GTTGGGGTGAGACCATAGTGTTCAGGTAATGGGCCAGAAAACTGCCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGGTGAGACCATAGTGTTCAGGTAATGGGCCAGAAAACTGCCTGGT  250

seq1  CCCCAGTCCCCAGGCCCAAGGGACAGATTGAGGTGGTTTTATCTTCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTCCCCAGGCCCAAGGGACAGATTGAGGTGGTTTTATCTTCAGAA  300

seq1  GGAGGAATACAGTAGCCTGCCTACCTGTAAGAACATCAGGGAGAATATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAATACAGTAGCCTGCCTACCTGTAAGAACATCAGGGAGAATATAC  350

seq1  AGGGATGTGGACTTCAGGAACAACCAGGTCTTTCCACCTATGGTAAGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATGTGGACTTCAGGAACAACCAGGTCTTTCCACCTATGGTAAGTGG  400

seq1  ATTTCAACAAAGACACACACCATGGGGCAAAGGGCAGCTGTACAACAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACAAAGACACACACCATGGGGCAAAGGGCAGCTGTACAACAAGC  450

seq1  AGTGTTGGTGCAGCAGGGTAGTTTGAGTGCAAACGAATGAAGGCAGAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGGTGCAGCAGGGTAGTTTGAGTGCAAACGAATGAAGGCAGAGCC  500

seq1  CCCTTCATAAGGCACAAAATAAACTGAGTCCCAGAAAACATCAGGGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCATAAGGCACAAAATAAACTGAGTCCCAGAAAACATCAGGGAAGA  550

seq1  TTGTTGTGACTTTGGGTCACCTGGGATTTCTTACAAATGCAGCCACAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTGACTTTGGGTCACCTGGGATTTCTTACAAATGCAGCCACAGCA  600

seq1  CAGAAGCTGACCAGCTAGACTTAATCAAAATTAATAGGTTTTTAAAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTGACCAGCTAGACTTAATCAAAATTAATAGGTTTTTAAAAAAC  650

seq1  CCTTCAGAAGACATAATTCAGAAGTAGAAGCCACACAGCCAGGGGCAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCAGAAGACATAATTCAGAAGTAGAAGCCACACAGCCAGGGGCAGAT  700

seq1  GCTTCCAAAGCCTGCCTCTGACAAAGGATATGTCCTATTGAACTCAACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAAAGCCTGCCTCTGACAAAGGATATGTCCTATTGAACTCAACTT  750

seq1  GGCTTCAAAACACCTTTGAGAAAGCCTGGAGTAAAGACAGAACAACATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCAAAACACCTTTGAGAAAGCCTGGAGTAAAGACAGAACAACATGT  800

seq1  TGGTGAGATCCTAGAGGGGCTGGAGTTCTCCAATAGCCTCCTGGGAGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAGATCCTAGAGGGGCTGGAGTTCTCCAATAGCCTCCTGGGAGCAG  850

seq1  GATGGAAAACAGGTAGACATTCTCTTGAAAGGAAACAATTTTTTATATAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAAACAGGTAGACATTCTCTTGAAAGGAAACAATTTTTTATATAG  900

seq1  CTAGCAATTCCATGTACAAAACAAGTAAAACCATATGCACAGACAAACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCAATTCCATGTACAAAACAAGTAAAACCATATGCACAGACAAACAT  950

seq1  TTACAAGCAAATGTTTATGCCTTATAGCACTGGGAACAATCCAAATGTCT  1000
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  TTACAAGCAAATGTTTATGCCTTATAGCACTGGGAAC-ATCC-AATGTCT  998

seq1  ATCGGCTGTTGAGTGAT-AAATAAAATGTGGCATATCCAGATATAATGGA  1049
      ||||||||||||||||| ||||||||||| |||||||||||||||||| |
seq2  ATCGGCTGTTGAGTGATAAAATAAAATGT-GCATATCCAGATATAATGCA  1047

seq1  ATATTGCTTAGCCTTTCAAGGCATGAG--ACACTGACATG-TTACACCAT  1096
      ||||||||||  | |||| | ||||||  ||||||||||| |||||||||
seq2  ATATTGCTTAAGCCTTCAGGCCATGAGAAACACTGACATGTTTACACCAT  1097

seq1  GAAAATTGTT-GTACAATTCCA-TTCACATGAAATGTCTGAAGATC-TGA  1143
      | |||||||| |||| |||||| |||||||| |||||||||   || |||
seq2  G-AAATTGTTGGTACCATTCCATTTCACATG-AATGTCTGAGATTCTTGA  1145

seq1  TCTAGAGAG-ACAGAA  1158
      |||| |||| ||||||
seq2  TCTA-AGAGAACAGAA  1160

seq1: chr13_34384263_34385314
seq2: B6Ng01-219I01.g_69_1132 (reverse)

seq1  CACA-CACCACCACCATTT-ATTTCAGGAATGGG--CCTATGCTTTGAAC  46
      |||| ||||||| |||||| ||||||||| ||||  | ||||| ||||||
seq2  CACAGCACCACC-CCATTTGATTTCAGGAGTGGGTCCTTATGC-TTGAAC  48

seq1  ACATTAG-AAAATTCACCCTC-TAATTTCAGAGGAAGAGACTAG-AAGCT  93
      || | || |||||||||| || |||||||||| ||||||||||| |||  
seq2  ACCTAAGAAAAATTCACCTTCATAATTTCAGATGAAGAGACTAGAAAGTC  98

seq1  GACAG-AATTTAAGTCA-TCTATTGTGGTCACAGTC-ATCTGAGGGACTC  140
      ||||| ||||| ||||| |||||||||   |||||| |||||||||||||
seq2  GACAGAAATTTCAGTCATTCTATTGTGTCAACAGTCAATCTGAGGGACTC  148

seq1  AAGCCACAGCTCAAATCTATCGATTTCTAGATCAATCTATGGATTCTTCT  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACAGCTCAAATCTATCGATTTCTAGATCAATCTATGGATTCTTCT  198

seq1  GCTGTAAAGACAGTTTTGTTTC-AAAGTAGAGAGGCAGCATTAGAATTCC  239
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  GCTGT-AAGACAGTTTTGTTTCAAAAGTAGAGAGGCAGCATTAGAATTCC  247

seq1  AACATGACAAAACTTGGCC-AGTAAGGAACCATACAATTTAATAAGGCTG  288
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACATGACAAAACTTGGCCGAGTAAGGAACCATACAATTTAATAAGGCTG  297

seq1  TTTACTCTGCAGAGAA-TTCAGCTAAACCTTATAA-TTTCAAATGCCAAA  336
      |||||||||||||||| |||||||||||||||||| ||||||||||||||
seq2  TTTACTCTGCAGAGAATTTCAGCTAAACCTTATAATTTTCAAATGCCAAA  347

seq1  GGGCCAAAATATTTGCTGGTTTTGC-TTTCCTCCTCTGATTCTGAGATGT  385
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GGGCCAAAATATTTGCTGGTTTTGCTTTTCCTCCTCTGATTCTGAGATGT  397

seq1  ATCGATCCTTACCAAATTGAAAGGCCCCTAGTAACCAAGCACTTTAACCT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATCCTTACCAAATTGAAAGGCCCCTAGTAACCAAGCACTTTAACCT  447

seq1  ATCTATACATTTAGGCAGTCACTGCATGTTTTTGTCTTCTAAGATGAGGC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATACATTTAGGCAGTCACTGCATGTTTTTGTCTTCTAAGATGAGGC  497

seq1  ATATGGTTCTCAGGGAGGCCTCGTGTTGGCATTCTTAGCATGCAGAAGGC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTCTCAGGGAGGCCTCGTGTTGGCATTCTTAGCATGCAGAAGGC  547

seq1  ACAGCACATCTGTCCATGCTTTACAGGCCTTTAAAAGTACTTTTTGTCCG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACATCTGTCCATGCTTTACAGGCCTTTAAAAGTACTTTTTGTCCG  597

seq1  AAGGACTGATATAGTTTAAGAAAAAAGCAGTCATAGGTATCAAAGCACAG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTGATATAGTTTAAGAAAAAAGCAGTCATAGGTATCAAAGCACAG  647

seq1  CTCCCTGTTGGAGAGTTCACTGACCACCTGCCCTGTACTACAGCATCCTG  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGTTGGAGAGTTCACTGACCACCTGCCCTGTACTACAGCATCCTG  697

seq1  GCCACACAGGGACTTCATTACCAGCCACATCTATTACTACTCACCACTGC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACAGGGACTTCATTACCAGCCACATCTATTACTACTCACCACTGC  747

seq1  ATTGTGACACAAGGAACTCCGATGCTCAGAAGCAGGTCAGAAAAAAAGAT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGACACAAGGAACTCCGATGCTCAGAAGCAGGTCAGAAAAAAAGAT  797

seq1  TTAGAGGCAAATGCTCCAGTTTCATCTTTTAATTTTTTGAGATAGGTTCT  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGCAAATGCTCCAGTTTCATCTTTTAATTTTTTGAGATAGGTTCT  847

seq1  CATTTTATAGCTCAGGCAGTTCAGGTTAGCCTTGAACTTTTGACGACCAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATAGCTCAGGCAGTTCAGGTTAGCCTTGAACTTTTGACGACCAT  897

seq1  TCTATCTCAAGCTCCCAAGTTCTGGGAATACAGGCAGGACCCATCATACC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCAAGCTCCCAAGTTCTGGGAATACAGGCAGGACCCATCATACC  947

seq1  TGTCTCCATCCCTCTTCTTCTTCCTCCTCCTCTCTTCCTTCTTTCGCTGA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCATCCCTCTTCTTCTTCCTCCTCCTCTCTTCCTTCTTTCGCTGA  997

seq1  TGTATTTATTGCTTTGCTTTTCACACTTTGGCTGCAGGATGACTGATAGC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATTGCTTTGCTTTTCACACTTTGGCTGCAGGATGACTGATAGC  1047

seq1  CTTCAATCTGTGAATTC  1052
      |||||||||||||||||
seq2  CTTCAATCTGTGAATTC  1064