BAC Information

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BAC

Clone NameB6Ng01-219K10
Chromosome13 (Build37)
Map Location 82,571,727 - 82,720,718
singlet/doubletdoublet
Overlap geneLOC238756
Upstream geneGpr98, Lysmd3, Polr3g, 2900024O10Rik, Cetn3
Downstream geneLOC667018, Mef2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219K10.bB6Ng01-219K10.g
ACCGA035424GA035425
length1,162967
definitionB6Ng01-219K10.b B6Ng01-219K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,719,556 - 82,720,718)(82,571,727 - 82,572,689)
sequence
gaattcaaaccattttaatcttaactgtaaacgtaaaaaaaaatgcaaca
caaaacctactccactctatattaagcagactgtttaaaaaatagttttt
aaacacctcaactaatgattaacaactattagccatgtatttttcaattc
agatcaccattcacacaaagaggatctggctagcactctcattcaggttg
tggaagacaatatatttggtctaattcctaagtaagatagaactagctgt
caagaatggaaaaagtagagatgagagggaatatcttagtaaacataaca
aaatattatgtttgtgttatgatattacaaagagacctgtcattatgatc
aattaatatgttattaaaataagaaaagaatgtatactaggtaataagta
caggttggactgtagcatacatgcctataatatgaatacatcctttatcc
ttgtatttgcaatagcacatcacttagaatgcacgtgcaatagttccata
attgtctaccaccacatatgcacaatgaaggtagttagaagggcatatta
tagctgcagtcaacatagcaatctatcacaggagaaccatattatttagt
taatccaacaatatggtttgacagattccttaaaaataaacaaaccagca
cattctgaaatttatcaagtgatttttcttcaaataaatatccatgctgt
gtttcaatgttctttaagcgttgacatttatgctgaatttgaaacttgct
atgaaaacgaaaacttgaatttctccaaatgaaagccttttggagttgat
aaacaattctcgctgaggcttaatagattctctctaaatttcaagtccaa
atgtcagagttagagactatgaagactgaaaaagtagacactttgttgat
gttttccctcctattactgttttataaaggtttttgttccagctaaacac
agcacatcatatggtctctagttagcactggcataaaaaaaaaaaaaaga
atttgcagagttcagaatagagaataacaggactgaggatatcagcttgt
ataatatatttctcatatgtagtagtgtgcatatactaagtggggcccta
cgtagaagagcattatattagagtgttaatacctccctgaaccgatggtc
atattttgagaa

gaattcacagtcactcaggtgagactgactgctttttacttagccttggt
ggaggaggcagagggaagatgaggacaatagtgtaaaatcactgctgtcc
aaggacctgccctgctgcgcaggatgctgtcctttatttatttataaacc
gagttttctgtttgtaagaaattcctaaaagagagcaaggaattattggt
gctgaggctcgttcacgggagtctgcctcagggtcttttcattttaaact
atcttctcagaattcagcacttaatccttccctatgtttgaatagataga
tcagtaagaagctactgaactctagcaactatgggtgcggatctacataa
gctttgtgtgtactagacagtgcttttgcattgagccatactttcatccc
atagtgctttaccactttaaatatagtaccagttgcttatcttttgtctc
ttgttctctgtgggatttctaattcttctttagtatatatatttttttcc
tttaaaatccattatatattttcatctataaggaaaaagaaactctggca
tgtaccagtgtgcccgatatttataaaatgttttacaagtacttagaatt
cagtgaacaataagcagcaaaatcaaaatgtctacacagcagattgagca
agaagtgatggttatgaggaaataactgaaatgcattacaaggatgaagg
gaagtaaagctgatgtcgatgaagagtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtccatatataatactattcctgctgtagaaaactaatgtaac
cctcttatttattacactgtggatgactatggaattacactgtcatgtta
gtcaaatacagagggaggagaaccacttgatattatttatatatgaacct
ttaaattttcttttaatatgaataaaaacagtaggatgattatcaaagaa
gtgaggactctaggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_82719556_82720718
seq2: B6Ng01-219K10.b_44_1205 (reverse)

seq1  TTCTCAAAATATGA-CATCTGTTTCAGGGA-GTATTTACACTCTTAATAT  48
      |||||||||||||| |||| | |||||||| ||||| |||||| ||||||
seq2  TTCTCAAAATATGACCATC-GGTTCAGGGAGGTATTAACACTC-TAATAT  48

seq1  AATGCTC-TCTACGTAGGG-CCCACTTAGTATTATGCACACTACTACATA  96
      ||||||| ||||||||||| ||||||||||| ||||||||||||||||||
seq2  AATGCTCTTCTACGTAGGGCCCCACTTAGTA-TATGCACACTACTACATA  97

seq1  TGAGAAAAATATATATACAAAAGCTGATATCCTCAGGTCCTGTTA-TCTC  145
      ||||||| |||| |||||  ||||||||||||||| ||||||||| ||||
seq2  TGAGAAATATAT-TATAC--AAGCTGATATCCTCA-GTCCTGTTATTCTC  143

seq1  TA-TCTGAACTCTGCAAATTCTTTTTTTTTTTTTTATGCCAGTGCTAACT  194
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGAACTCTGCAAATTCTTTTTTTTTTTTTTATGCCAGTGCTAACT  193

seq1  AGAGACCATATGATGTGCTGTGTTTAGCTGGAACAAAAACCTTTATAAAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACCATATGATGTGCTGTGTTTAGCTGGAACAAAAACCTTTATAAAA  243

seq1  CAGTAATAGGAGGGAAAACATCAACAAAGTGTCTACTTTTTCAGTCTTCA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAATAGGAGGGAAAACATCAACAAAGTGTCTACTTTTTCAGTCTTCA  293

seq1  TAGTCTCTAACTCTGACATTTGGACTTGAAATTTAGAGAGAATCTATTAA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCTAACTCTGACATTTGGACTTGAAATTTAGAGAGAATCTATTAA  343

seq1  GCCTCAGCGAGAATTGTTTATCAACTCCAAAAGGCTTTCATTTGGAGAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCGAGAATTGTTTATCAACTCCAAAAGGCTTTCATTTGGAGAAA  393

seq1  TTCAAGTTTTCGTTTTCATAGCAAGTTTCAAATTCAGCATAAATGTCAAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTTTCGTTTTCATAGCAAGTTTCAAATTCAGCATAAATGTCAAC  443

seq1  GCTTAAAGAACATTGAAACACAGCATGGATATTTATTTGAAGAAAAATCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAGAACATTGAAACACAGCATGGATATTTATTTGAAGAAAAATCA  493

seq1  CTTGATAAATTTCAGAATGTGCTGGTTTGTTTATTTTTAAGGAATCTGTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAAATTTCAGAATGTGCTGGTTTGTTTATTTTTAAGGAATCTGTC  543

seq1  AAACCATATTGTTGGATTAACTAAATAATATGGTTCTCCTGTGATAGATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATATTGTTGGATTAACTAAATAATATGGTTCTCCTGTGATAGATT  593

seq1  GCTATGTTGACTGCAGCTATAATATGCCCTTCTAACTACCTTCATTGTGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTTGACTGCAGCTATAATATGCCCTTCTAACTACCTTCATTGTGC  643

seq1  ATATGTGGTGGTAGACAATTATGGAACTATTGCACGTGCATTCTAAGTGA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGGTGGTAGACAATTATGGAACTATTGCACGTGCATTCTAAGTGA  693

seq1  TGTGCTATTGCAAATACAAGGATAAAGGATGTATTCATATTATAGGCATG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTATTGCAAATACAAGGATAAAGGATGTATTCATATTATAGGCATG  743

seq1  TATGCTACAGTCCAACCTGTACTTATTACCTAGTATACATTCTTTTCTTA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTACAGTCCAACCTGTACTTATTACCTAGTATACATTCTTTTCTTA  793

seq1  TTTTAATAACATATTAATTGATCATAATGACAGGTCTCTTTGTAATATCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAACATATTAATTGATCATAATGACAGGTCTCTTTGTAATATCA  843

seq1  TAACACAAACATAATATTTTGTTATGTTTACTAAGATATTCCCTCTCATC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAAACATAATATTTTGTTATGTTTACTAAGATATTCCCTCTCATC  893

seq1  TCTACTTTTTCCATTCTTGACAGCTAGTTCTATCTTACTTAGGAATTAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTTTCCATTCTTGACAGCTAGTTCTATCTTACTTAGGAATTAGA  943

seq1  CCAAATATATTGTCTTCCACAACCTGAATGAGAGTGCTAGCCAGATCCTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATATTGTCTTCCACAACCTGAATGAGAGTGCTAGCCAGATCCTC  993

seq1  TTTGTGTGAATGGTGATCTGAATTGAAAAATACATGGCTAATAGTTGTTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTGAATGGTGATCTGAATTGAAAAATACATGGCTAATAGTTGTTA  1043

seq1  ATCATTAGTTGAGGTGTTTAAAAACTATTTTTTAAACAGTCTGCTTAATA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAGTTGAGGTGTTTAAAAACTATTTTTTAAACAGTCTGCTTAATA  1093

seq1  TAGAGTGGAGTAGGTTTTGTGTTGCATTTTTTTTTACGTTTACAGTTAAG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGGAGTAGGTTTTGTGTTGCATTTTTTTTTACGTTTACAGTTAAG  1143

seq1  ATTAAAATGGTTTGAATTC  1163
      |||||||||||||||||||
seq2  ATTAAAATGGTTTGAATTC  1162


seq1: chr13_82571727_82572689
seq2: B6Ng01-219K10.g_65_1031

seq1  GAATTCACAGTCACTCAGGTGAGACTGACTGCTTTTTACTTAGCCTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTCACTCAGGTGAGACTGACTGCTTTTTACTTAGCCTTGGT  50

seq1  GGAGGAGGCAGAGGGAAGATGAGGACAATAGTGTAAAATCACTGCTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGCAGAGGGAAGATGAGGACAATAGTGTAAAATCACTGCTGTCC  100

seq1  AAGGACCTGCCCTGCTGCGCAGGATGCTGTCCTTTATTTATTTATAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTGCCCTGCTGCGCAGGATGCTGTCCTTTATTTATTTATAAACC  150

seq1  GAGTTTTCTGTTTGTAAGAAATTCCTAAAAGAGAGCAAGGAATTATTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCTGTTTGTAAGAAATTCCTAAAAGAGAGCAAGGAATTATTGGT  200

seq1  GCTGAGGCTCGTTCACGGGAGTCTGCCTCAGGGTCTTTTCATTTTAAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGCTCGTTCACGGGAGTCTGCCTCAGGGTCTTTTCATTTTAAACT  250

seq1  ATCTTCTCAGAATTCAGCACTTAATCCTTCCCTATGTTTGAATAGATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCTCAGAATTCAGCACTTAATCCTTCCCTATGTTTGAATAGATAGA  300

seq1  TCAGTAAGAAGCTACTGAACTCTAGCAACTATGGGTGCGGATCTACATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGAAGCTACTGAACTCTAGCAACTATGGGTGCGGATCTACATAA  350

seq1  GCTTTGTGTGTACTAGACAGTGCTTTTGCATTGAGCCATACTTTCATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGTGTACTAGACAGTGCTTTTGCATTGAGCCATACTTTCATCCC  400

seq1  ATAGTGCTTTACCACTTTAAATATAGTACCAGTTGCTTATCTTTTGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGCTTTACCACTTTAAATATAGTACCAGTTGCTTATCTTTTGTCTC  450

seq1  TTGTTCTCTGTGGGATTTCTAATTCTTCTTTAGTATATATATTTTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCTGTGGGATTTCTAATTCTTCTTTAGTATATATATTTTTTTCC  500

seq1  TTTAAAATCCATTATATATTTTCATCTATAAGGAAAAAGAAACTCTGGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATCCATTATATATTTTCATCTATAAGGAAAAAGAAACTCTGGCA  550

seq1  TGTACCAGTGTGCCCGATATTTATAAAATGTTTTACAAGTACTTAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCAGTGTGCCCGATATTTATAAAATGTTTTACAAGTACTTAGAATT  600

seq1  CAGTGAACAATAAGCAGCAAAATCAAAATGTCTACACAGCAGATTGAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAACAATAAGCAGCAAAATCAAAATGTCTACACAGCAGATTGAGCA  650

seq1  AGAAGTGATGGTTATGAGGAAATAACTGAAATGCATTACAAGGATGAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGATGGTTATGAGGAAATAACTGAAATGCATTACAAGGATGAAGG  700

seq1  GAAGTAAAGCTGATGTCGATGAAGAGTGTGTGTGTGTGTGTGTGTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAAGCTGATGTCGATGAAGAGTGTGTGTGTGTGTGTGTGTGTGTG  750

seq1  TGTGTGTGTCCATATATAATACTATT-CTGCTGTAG-AAACTAATGTAA-  797
      |||||||||||||||||||||||||| ||||||||| |||||||||||| 
seq2  TGTGTGTGTCCATATATAATACTATTCCTGCTGTAGAAAACTAATGTAAC  800

seq1  CCTCTAATTTATTACACTGTGGATGACTATGGAA-TACACTGTCATGTAA  846
      ||||| |||||||||||||||||||||||||||| ||||||||||||| |
seq2  CCTCTTATTTATTACACTGTGGATGACTATGGAATTACACTGTCATGTTA  850

seq1  GTCAAATACAGAGGGAGGAGAACCAC-TGATATTATTTATATATGAAACC  895
      |||||||||||||||||||||||||| |||||||||||||||||| ||||
seq2  GTCAAATACAGAGGGAGGAGAACCACTTGATATTATTTATATATG-AACC  899

seq1  TTTAAAATTTCATTTAATATGAAATAAAAACAGAGGAATGATTATCAGAG  945
      |||||| |||| ||||||||| |||||||||||  | |||||||||| ||
seq2  TTTAAATTTTCTTTTAATATG-AATAAAAACAGTAGGATGATTATCAAAG  948

seq1  -AGTGAGACATCTAGGAGT  963
       ||||||   |||||||||
seq2  AAGTGAGGACTCTAGGAGT  967


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