BAC Information

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BAC

Clone NameB6Ng01-219M11
Chromosome13 (Build37)
Map Location 101,838,086 - 101,928,069
singlet/doubletdoublet
Overlap genenone
Upstream geneBdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5, LOC619865, LOC619917, EG619937
Downstream gene4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219M11.bB6Ng01-219M11.g
ACCGA035516GA035517
length9911,127
definitionB6Ng01-219M11.b B6Ng01-219M11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,927,064 - 101,928,069)(101,838,086 - 101,839,200)
sequence
gaattccaggcattgaacttatctctctaggcttatgtaacaatcatctt
cacctattgagccatcctgctggttttcccttctatgtaataggagtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtctgttcatgattgcaa
aggccatgtcatattaaaaattaataagcattacagcttctcatagcatc
cttctccagtctctggttcttatactttttctaccccatctcccatgatt
ttcccctgggccatgaagggtttgatatagctgtttcttttgtctatttt
ttatgatcaatctgaagctatggatttaggagagagcttccttccttcaa
aattagcagggtagagggaaggtatgtctagtcacgtgagaaactgcaga
tattatcagaagttgaggcagccactgtgtcaataaatcttagagaaccc
tgaaggaactaaaaaactggagggaactattctgggtctatttttaataa
taggaccagtggggttacatgctactataattctggagtttagaggagaa
agtgactacttgaggttttaaatttttctatatattgcaacaagtttaga
taaatagaaggctgcagacataaaataggatttcctgtaagcttttacct
agcttcctctaagtgtaacatcttacataacccatgcacagttatcaaaa
ctaaagaattaatgttgggggctggtgagatggctcatgggttagagcac
ccgactgctcttcccgaagtccagagttcaaatcccagcaaccacatggt
ggcttacaaccatccgtacgagatctgactccctcttctggagtgtctga
agacagctacaatgtacttacatataataataaataaatctttaaaaaaa
aagatttatgtgggacagaacattaactaaattagagccttataaagatt
aatatttgcactagtgttccttcctggtccaggatcaatct
gaattcatgtattttctgttggcagcttgatgtaatgggtgggaatgggc
tagcctgctccaagctgcttcatggttcttgggaggattaaaggcagcag
aaggcagccggcattaggatcacgtagcttcctccatataggagaaggcc
tgaaactttcgggagaagcttcgctccacctttaaaaagcctattgatat
ctatagaaagggaatgccaagaaacggtgcctctgtttagatatgggaga
gaacacctactggaagagaaatggctgagtcttttaggaaaaaagaggag
cccgatcctggaggctgaggaacaagggtgttttagagcgagtttggtac
atgctgatgccagcttgtaacctgttcctggaaaggaagattaatcagaa
cacggatgtacctatttactcgccatttgtaccatagtggcagaactcag
cagttggagtggagacggcaggaaggctgaaataattgttttcttgacct
tcatagagagatgcactgagctctgttgcaggcagagggtagtgcatagc
tgagtatgggagacagtggcagtgtgccaaaaaaggaaggctggctttga
tttaatgctggtgggatgtgaaacaggcccagggtggttggcatgggcgg
ggggctggggggacggtagagccatgaaagattcttttttgttcaccagg
aagccagtactgtgaccaccaggatgacaaccctgggcgataaggttaaa
cagcaggaccagggcatcttcagaactttccagtctctgccgagcagttt
tgcaggcagagagaacagttctattaagtagacaaatgcatgcacatttg
actagagttcttaaactggtgacgaagttcaccgacaagctgaaaagcca
tgtgcaagagagaatggttttcaaggggtgaaactagccttttctagtgt
ctttggagaggaactgcagaaggtccgaggaattgctgctaaaaggctga
ggagaggatgacgtagggaggatggcctaaggtaaggaataaagttcatc
cagggagcggctctgaattaacggaacccagactattcaccagtaggtat
gaaggagagcgctggagttgaggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_101927064_101928069
seq2: B6Ng01-219M11.b_44_1034 (reverse)

seq1  AGATTGGATCCTGGAACAGGGAAGGAACACTAGTGGCAAAATTATTAAAA  50
      ||||| ||||||||| || ||||||||||||||| |||||  ||||  ||
seq2  AGATT-GATCCTGGACCA-GGAAGGAACACTAGT-GCAAA--TATT--AA  43

seq1  TCTTTATAGGGCTCTTAATTTAGTTAATGGTTCTGTCCCAACATTAATTC  100
      |||||||| ||||| ||||||||||||| |||||||||| |||| |||  
seq2  TCTTTATAAGGCTC-TAATTTAGTTAAT-GTTCTGTCCC-ACATAAAT--  88

seq1  TTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACATTGTAGCT  150
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTTTTTTTTAAAGATTTATTTA-TTATTATATGTAAGTACATTGTAGCT  137

seq1  GTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCGTTACGGATGGTTGT  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCG-TACGGATGGTTGT  186

seq1  AAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCA  250
      ||||||||||||||||||||||||||||||||||||| |  |||||||||
seq2  AAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACTTCGGGAAGAGCA  236

seq1  GTCGGGTGCTCTAACCCACTGAGCCATCTCACCAGCCCCCAACATTAATT  300
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTCGGGTGCTCTAACCCA-TGAGCCATCTCACCAGCCCCCAACATTAATT  285

seq1  C-TTAGTTTTGATAACTGTGCATGGGTTATGTAAGATGTTACACTTAGAG  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGTTTTGATAACTGTGCATGGGTTATGTAAGATGTTACACTTAGAG  335

seq1  GAAGCTAGGTAAAAGCTTACAGGAAATTCCTATTTTATGTCTGCAGCCTT  399
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAGCTAGGTAAAAGCTTACAGGAAA-TCCTATTTTATGTCTGCAGCCTT  384

seq1  CTATTTATCTAAACTTGTTGCAATATATAGAAAAATTTAAAACCTCAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATCTAAACTTGTTGCAATATATAGAAAAATTTAAAACCTCAAGT  434

seq1  AGTCACTTTCTCCTCTAAACTCCAGAATTATAGTAGCATGTAACCCCACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTTTCTCCTCTAAACTCCAGAATTATAGTAGCATGTAACCCCACT  484

seq1  GGTCCTATTATTAAAAATAGACCCAGAATAGTTCCCTCCAGTTTTTTAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTATTATTAAAAATAGACCCAGAATAGTTCCCTCCAGTTTTTTAGT  534

seq1  TCCTTCAGGGTTCTCTAAGATTTATTGACACAGTGGCTGCCTCAACTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGGGTTCTCTAAGATTTATTGACACAGTGGCTGCCTCAACTTCT  584

seq1  GATAATATCTGCAGTTTCTCACGTGACTAGACATACCTTCCCTCTACCCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATATCTGCAGTTTCTCACGTGACTAGACATACCTTCCCTCTACCCT  634

seq1  GCTAATTTTGAAGGAAGGAAGCTCTCTCCTAAATCCATAGCTTCAGATTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTTTGAAGGAAGGAAGCTCTCTCCTAAATCCATAGCTTCAGATTG  684

seq1  ATCATAAAAAATAGACAAAAGAAACAGCTATATCAAACCCTTCATGGCCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAAAAATAGACAAAAGAAACAGCTATATCAAACCCTTCATGGCCC  734

seq1  AGGGGAAAATCATGGGAGATGGGGTAGAAAAAGTATAAGAACCAGAGACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAAAATCATGGGAGATGGGGTAGAAAAAGTATAAGAACCAGAGACT  784

seq1  GGAGAAGGATGCTATGAGAAGCTGTAATGCTTATTAATTTTTAATATGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGATGCTATGAGAAGCTGTAATGCTTATTAATTTTTAATATGAC  834

seq1  ATGGCCTTTGCAATCATGAACAGACAACACACACACACACACACACACAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTTGCAATCATGAACAGACAACACACACACACACACACACACAC  884

seq1  ACACACACACACTCCTATTACATAGAAGGGAAAACCAGCAGGATGGCTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACTCCTATTACATAGAAGGGAAAACCAGCAGGATGGCTCA  934

seq1  ATAGGTGAAGATGATTGTTACATAAGCCTAGAGAGATAAGTTCAATGCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTGAAGATGATTGTTACATAAGCCTAGAGAGATAAGTTCAATGCCT  984

seq1  GGAATTC  1006
      |||||||
seq2  GGAATTC  991

seq1: chr13_101838086_101839200
seq2: B6Ng01-219M11.g_71_1197

seq1  GAATTCATGTATTTTCTGTTGGCAGCTTGATGTAATGGGTGGGAATGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTATTTTCTGTTGGCAGCTTGATGTAATGGGTGGGAATGGGC  50

seq1  TAGCCTGCTCCAAGCTGCTTCATGGTTCTTGGGAGGATTAAAGGCAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGCTCCAAGCTGCTTCATGGTTCTTGGGAGGATTAAAGGCAGCAG  100

seq1  AAGGCAGCCGGCATTAGGATCACGTAGCTTCCTCCATATAGGAGAAGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGCCGGCATTAGGATCACGTAGCTTCCTCCATATAGGAGAAGGCC  150

seq1  TGAAACTTTCGGGAGAAGCTTCGCTCCACCTTTAAAAAGCCTATTGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTTCGGGAGAAGCTTCGCTCCACCTTTAAAAAGCCTATTGATAT  200

seq1  CTATAGAAAGGGAATGCCAAGAAACGGTGCCTCTGTTTAGATATGGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGAAAGGGAATGCCAAGAAACGGTGCCTCTGTTTAGATATGGGAGA  250

seq1  GAACACCTACTGGAAGAGAAATGGCTGAGTCTTTTAGGAAAAAAGAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACCTACTGGAAGAGAAATGGCTGAGTCTTTTAGGAAAAAAGAGGAG  300

seq1  CCCGATCCTGGAGGCTGAGGAACAAGGGTGTTTTAGAGCGAGTTTGGTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGATCCTGGAGGCTGAGGAACAAGGGTGTTTTAGAGCGAGTTTGGTAC  350

seq1  ATGCTGATGCCAGCTTGTAACCTGTTCCTGGAAAGGAAGATTAATCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATGCCAGCTTGTAACCTGTTCCTGGAAAGGAAGATTAATCAGAA  400

seq1  CACGGATGTACCTATTTACTCGCCATTTGTACCATAGTGGCAGAACTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGATGTACCTATTTACTCGCCATTTGTACCATAGTGGCAGAACTCAG  450

seq1  CAGTTGGAGTGGAGACGGCAGGAAGGCTGAAATAATTGTTTTCTTGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGGAGTGGAGACGGCAGGAAGGCTGAAATAATTGTTTTCTTGACCT  500

seq1  TCATAGAGAGATGCACTGAGCTCTGTTGCAGGCAGAGGGTAGTGCATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAGAGATGCACTGAGCTCTGTTGCAGGCAGAGGGTAGTGCATAGC  550

seq1  TGAGTATGGGAGACAGTGGCAGTGTGCCAAAAAAGGAAGGCTGGCTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATGGGAGACAGTGGCAGTGTGCCAAAAAAGGAAGGCTGGCTTTGA  600

seq1  TTTAATGCTGGTGGGATGTGAAACAGGCCCAGGGTGGTTGGCATGGGCGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGCTGGTGGGATGTGAAACAGGCCCAGGGTGGTTGGCATGGGCGG  650

seq1  GGGGCTGGGGGGACGGTAGAGCCATGAAAGATTCTTTTTTGTTCACCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTGGGGGGACGGTAGAGCCATGAAAGATTCTTTTTTGTTCACCAGG  700

seq1  AAGCCAGTACTGTGACCACCAGGATGACAACCCTGGGCGATAAGGTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGTACTGTGACCACCAGGATGACAACCCTGGGCGATAAGGTTAAA  750

seq1  CAGCAGGACCAGGGCATCTTCAGAACTTTCCAGTCTCTGCCGAGCAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGGACCAGGGCATCTTCAGAACTTTCCAGTCTCTGCCGAGCAGTTT  800

seq1  TGCAGGCAGAGAGAACAGTTCTATTAAGTAGACAAATGCATGCACA-TTG  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGCAGGCAGAGAGAACAGTTCTATTAAGTAGACAAATGCATGCACATTTG  850

seq1  ACTAGAGTTCTTAAACTGGTGACGAAGTTCACCGACAAGCTGAAAAGCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGTTCTTAAACTGGTGACGAAGTTCACCGACAAGCTGAAAAGCCA  900

seq1  TGTGCAAGAGAGAATGG-TTTCAAGGGGTGAAACCAGCCTTTTCTAGTGT  948
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  TGTGCAAGAGAGAATGGTTTTCAAGGGGTGAAACTAGCCTTTTCTAGTGT  950

seq1  CTTGGGAGAGGAACTGCAAGAAGG-CCGAGGAA-TGCTGCTAAAAGGCTG  996
      ||| ||||||||||||| |||||| |||||||| ||||||||||||||||
seq2  CTTTGGAGAGGAACTGC-AGAAGGTCCGAGGAATTGCTGCTAAAAGGCTG  999

seq1  AGGAGAGGATGAAGTA-GGAAGATGGC--TATGTTAGGAATAAAG-TCA-  1041
      |||||||||||| ||| ||| ||||||   | || |||||||||| ||| 
seq2  AGGAGAGGATGACGTAGGGAGGATGGCCTAAGGTAAGGAATAAAGTTCAT  1049

seq1  CCAGGGAGCGG--CTGAA-TAGAGGACCCAAGACTATTCACCAGGAAGAA  1088
      |||||||||||  ||||| ||  ||| || |||||||||||||| | | |
seq2  CCAGGGAGCGGCTCTGAATTAACGGAACCCAGACTATTCACCAGTAGGTA  1099

seq1  TGAAGGAGAGCGCT-GAGTTGAGGAGCA  1115
      |||||||||||||| |||||||||||||
seq2  TGAAGGAGAGCGCTGGAGTTGAGGAGCA  1127