BAC Information

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BAC

Clone NameB6Ng01-219P16
Chromosome13 (Build37)
Map Location 60,371,215 - 60,572,430
singlet/doubletdoublet
Overlap genenone
Upstream geneAgtpbp1, Mak10, Golph2, 4921517D22Rik, 1700013B16Rik, EG238662, 4932411G14Rik, Isca1, Zcchc6, LOC100041267, Gas1, EG328264
Downstream geneDapk1, LOC218274, BC051665, 2310051M13Rik, 4930486L24Rik, Tpbpb, Ctla2a, Tpbpa, Ctsj, Ctsq, Ctsr, Cts6, Cts8, Cts8-ps, LOC435362, Cts7, Cts7-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219P16.bB6Ng01-219P16.g
ACCGA035658GA035659
length5911,017
definitionB6Ng01-219P16.b B6Ng01-219P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,571,834 - 60,572,430)(60,371,215 - 60,372,216)
sequence
agcagtaaaattccacgacaggtttttcttgtagcccatgagggttttct
tttccaaggtacaccagggagtgcaatctctaggtcacagaaactcagaa
acctttatgcacaattcataaatgggcttgacctgcttttccctcggttg
ccatggcagccaggtacagccagctcccagggctcccctaggctcctccg
gtttgtgaaacttataacttagccagggagagaagggggggggggcacag
caggcagtacttatagtctaggtgagcacggttgtgatgttcaacgagtg
agcattctctgggcaaaatgctgggccctgcaccactgcaggtagataga
tgctccttcatcatcctgcccctgctttatttgggccacgaattccctag
gcttcccaacagcttgcacagccctccctctgttggatgttcctcatgct
gcctagctggttcatacacagaggctgcaagctcaccccgctgctgcagg
gaagcagccctgaagattcacaagtatgtggacagaaggagtgtgggaag
accccaagcgatttgctcaacaaagtggcaggtacagaatt
gaattctaagtgagctcttctttgttagctgagcaggtggaaaacctgtc
tttaaccttcttttagaagactgtgtgtggtgtgcgtgtatgtatgtgtt
tgcatgtgtgtgttataagcgtgtgcggagacctgaggacatgtgtactc
atgtttgcatgtgtgcgttgcatgcatgggagaaggcctgaggttggcgt
ggggtgtttttctcacttctcttcactatgtttattgaaacatgatctct
catggaaccctgagctcaacagtaccggccagccttgagatccagtcttt
gacttcagtactggtattacagaaagtctacctgtcccccaaattcacat
gtgttctgggatctgaactctattactcaccactgaaccatcttttcagc
cctgaatattaagaaaaacaaaatgtggatatcaattgctcttcaaggta
tgtgcttcttcaggagataaacacatcatggaggcttcaagaacaagtct
ttctttctcctttaacaagagagcaagccacaatgcctgcatgtttttct
ggtgtaattatcgactagaggaaagccagcttccaccagttccctcccat
tggcttctggcagctccagcctccttggttctctgtagacagcaaatcag
ctcacagctgaaatgcaagaagcaaaatgcgtagagaagggactcagaag
aaatggcttctctccggcctgtggcgtctccaccctttcccattcaggag
gttcaactgatgctctctgcaaattctctgctagagttttgggaactctt
gtgcagtcagaggtttctgataaagtctagagtggggatccaagaatcta
gtttgcaaacagtcttcccagctgctgctgctgatcttccacggacagtg
atctgagcagcaagaggtggggaggcagggcttgccctctggaggcaaca
cacaacattatctgaaaatgctcaggtgtgaagctagttggcagcaaaca
agtgaatctttcttgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_60571834_60572430
seq2: B6Ng01-219P16.b_45_641 (reverse)

seq1  AATTCTGTACCTGCCACTTTGTTGAGCAAATCGCTTGGGGTCTTCCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGTACCTGCCACTTTGTTGAGCAAATCGCTTGGGGTCTTCCCACA  50

seq1  CTCCTTCTGTCCACATACTTGTGAATCTTCAGGGCTGCTTCCCTGCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTCTGTCCACATACTTGTGAATCTTCAGGGCTGCTTCCCTGCAGCA  100

seq1  GCGGGGTGAGCTTGCAGCCTCTGTGTATGAACCAGCTAGGCAGCATGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGGTGAGCTTGCAGCCTCTGTGTATGAACCAGCTAGGCAGCATGAGG  150

seq1  AACATCCAACAGAGGGAGGGCTGTGCAAGCTGTTGGGATGCCTAGGGAAT  200
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AACATCCAACAGAGGGAGGGCTGTGCAAGCTGTTGGGAAGCCTAGGGAAT  200

seq1  TCGTGGCCCAAATAAAGCAGGGGCAGGATGATGAAGGAGCATCTATCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGCCCAAATAAAGCAGGGGCAGGATGATGAAGGAGCATCTATCTAC  250

seq1  CTGCAGTGGTGCAGGGCCCAGCATTTTGCCCAGAGAATGCTCACTCGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGGTGCAGGGCCCAGCATTTTGCCCAGAGAATGCTCACTCGTTG  300

seq1  AACATCACAACCGTGCTCACCTAGACTCTAAGTACTGCCTGCTGTGCCCC  350
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AACATCACAACCGTGCTCACCTAGACTATAAGTACTGCCTGCTGTGCCCC  350

seq1  CCCCCCCTTCTCTCCCTGGCTAAGTTATAAGTTTCACAAACCGGAGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCTTCTCTCCCTGGCTAAGTTATAAGTTTCACAAACCGGAGGAGC  400

seq1  CTAGGGGAGCCCTGGGAGCTGGCTGTACCTGGCTGCCATGGCAACCGAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGGAGCCCTGGGAGCTGGCTGTACCTGGCTGCCATGGCAACCGAGG  450

seq1  GAAAAGCAGGTCAAGCCCATTTATGAATTGTGCATAAAGGTTTCTGAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAGGTCAAGCCCATTTATGAATTGTGCATAAAGGTTTCTGAGTT  500

seq1  TCTGTGACCTAGAGATTGCACTCCCTGGTGTACCTTGGAAAAGAAAACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGACCTAGAGATTGCACTCCCTGGTGTACCTTGGAAAAGAAAACCC  550

seq1  TCATGGGCTACAAGAAAAACCTGTCGTGGAATTTTACTGCTGAATTC  597
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGCTACAAGAAAAACCTGTCGTGGAATTTTACTGCTGAATTC  597

seq1: chr13_60371215_60372216
seq2: B6Ng01-219P16.g_69_1085

seq1  GAATTCTAAGTGAGCTCTTCTTTGTTAGCTGAGCAGGTGGAAAACCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGTGAGCTCTTCTTTGTTAGCTGAGCAGGTGGAAAACCTGTC  50

seq1  TTTAACCTTCTTTTAGAAGACTGTGTGTGGTGTGCGTGTATGTATGTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTTCTTTTAGAAGACTGTGTGTGGTGTGCGTGTATGTATGTGTT  100

seq1  TGCATGTGTGTGTTATAAGCGTGTGCGGAGACCTGAGGACATGTGTACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGTGTGTTATAAGCGTGTGCGGAGACCTGAGGACATGTGTACTC  150

seq1  ATGTTTGCATGTGTGCGTTGCATGCATGGGAGAAGGCCTGAGGTTGGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCATGTGTGCGTTGCATGCATGGGAGAAGGCCTGAGGTTGGCGT  200

seq1  GGGGTGTTTTTCTCACTTCTCTTCACTATGTTTATTGAAACATGATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGTTTTTCTCACTTCTCTTCACTATGTTTATTGAAACATGATCTCT  250

seq1  CATGGAACCCTGAGCTCAACAGTACCGGCCAGCCTTGAGATCCAGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAACCCTGAGCTCAACAGTACCGGCCAGCCTTGAGATCCAGTCTTT  300

seq1  GACTTCAGTACTGGTATTACAGAAAGTCTACCTGTCCCCCAAATTCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGTACTGGTATTACAGAAAGTCTACCTGTCCCCCAAATTCACAT  350

seq1  GTGTTCTGGGATCTGAACTCTATTACTCACCACTGAACCATCTTTTCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGGGATCTGAACTCTATTACTCACCACTGAACCATCTTTTCAGC  400

seq1  CCTGAATATTAAGAAAAACAAAATGTGGATATCAATTGCTCTTCAAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATATTAAGAAAAACAAAATGTGGATATCAATTGCTCTTCAAGGTA  450

seq1  TGTGCTTCTTCAGGAGATAAACACATCATGGAGGCTTCAAGAACAAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCTTCAGGAGATAAACACATCATGGAGGCTTCAAGAACAAGTCT  500

seq1  TTCTTTCTCCTTTAACAAGAGAGCAAGCCACAATGCCTGCATGTTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTCCTTTAACAAGAGAGCAAGCCACAATGCCTGCATGTTTTTCT  550

seq1  GGTGTAATTATCGACTAGAGGAAAGCCAGCTTCCACCAGTTCCCTCCCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAATTATCGACTAGAGGAAAGCCAGCTTCCACCAGTTCCCTCCCAT  600

seq1  TGGCTTCTGGCAGCTCCAGCCTCCTTGGTTCTCTGTAGACAGCAAATCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTGGCAGCTCCAGCCTCCTTGGTTCTCTGTAGACAGCAAATCAG  650

seq1  CTCACAGCTGAAATGCAAGAAGC-AAATGCGTAGAGAAGGGACTCAGAAG  699
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTCACAGCTGAAATGCAAGAAGCAAAATGCGTAGAGAAGGGACTCAGAAG  700

seq1  AAATGGCTTCTCTCCGGCCTGTGGCGTCTCCACCCTTTCCCATTCAGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCTTCTCTCCGGCCTGTGGCGTCTCCACCCTTTCCCATTCAGGAG  750

seq1  GTTCAACTGATGCTCTCTGCAAATTCTCTGCTAGAGTTTT-GGAACTCTT  798
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTCAACTGATGCTCTCTGCAAATTCTCTGCTAGAGTTTTGGGAACTCTT  800

seq1  GTGCAGTCAGAGG-TTCTGATAAAGTCTAGAGT-GGGATCCAAGAATCTA  846
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  GTGCAGTCAGAGGTTTCTGATAAAGTCTAGAGTGGGGATCCAAGAATCTA  850

seq1  G-TTGCAAACAGTCTT-CCAGCTGCTGCTGCTGATCTTCCACGGACAGTG  894
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTTGCAAACAGTCTTCCCAGCTGCTGCTGCTGATCTTCCACGGACAGTG  900

seq1  ATCTGAGCAGCAAGAGGT-GGGAGGCAGGGCTTGCCCTCTGGAGGCAACA  943
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATCTGAGCAGCAAGAGGTGGGGAGGCAGGGCTTGCCCTCTGGAGGCAACA  950

seq1  CAC-ACA-TATCTGAGAATGC-CA-GTGTG-AGCTAG-TGGCAGC-AACA  986
      ||| ||| ||||||| ||||| || ||||| |||||| ||||||| ||||
seq2  CACAACATTATCTGAAAATGCTCAGGTGTGAAGCTAGTTGGCAGCAAACA  1000

seq1  AGTTGATC-CTCTTGTA  1002
      |||  |||  |||||||
seq2  AGTGAATCTTTCTTGTA  1017