BAC Information

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BAC

Clone NameB6Ng01-220B07
Chromosome13 (Build37)9 (Build37)
Map Location 106,401,460 - 106,401,98123,962,189 - 23,963,303
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSdccag10, 3110031B13Rik, A930021C24Rik, EG238836, Rgs7bp, 4933425L06Rik, LOC100040646, LOC100040656, Rnf180, Htr1a
Downstream geneEG668025, Olfr717-ps1, LOC631097, EG620949
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220B07.bB6Ng01-220B07.g
ACCGA035730GA035731
length9721,097
definitionB6Ng01-220B07.b B6Ng01-220B07.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(106,401,460 - 106,401,981)(23,962,189 - 23,963,303)
sequence
gaattctttgtttagctcagtactccatttttaaatagggttatttgatt
ttctgaagtccatcttcttgagttctttgtatatattggatattagtccc
ctatctgatataggattggtaaggatcctttcccagtctgttggtggctt
tttgtcttattgacagtgtcttctttttttttttaattcttttttttctt
tttccaatttttattaggtattttcttcatttacatttcaaatgctatcc
tgaaagtcccctatataccaccccctgctaccctacccacccactcccac
tttttggccctggtattcccttgtactggagcatataaagtttgcaagac
caaggggcctttcttaccaatcatggccgtctaggccatcttctgctaca
tatgcagctagagacatgagctccagggggtactggttagttcatatttt
tgttccatctatagggttgcagaccccttcagctccttgggtactttctc
taactccttcattgggagccctgtgatccatccaatagatgattgtgagc
ttactcttctgtatatgccaggcactggcatagcctcacaagagacagct
atatcagggtcctttcagcaaaatcttgctggcatgtgcaatagtgtctg
cgtttggtggctgattatgggatggatcccctggtggggtagtctctgga
tggtccatcttttcgtcttagctccaaactttgtctctataaccccttcc
atgggtatttttttcctattctaaggaggaatgaagtagccacacgtttt
gtgaccaattatatggtcagtttagaagaaggaaccatgaggttgctgag
aagaaagtatatccttttcttttaggataaaaatgtttgggtagatatct
gttaaatccatttgtttcaataacttctgtttgtttcaattgtgtcttct
gtttagtttctgtttccaggat

gaattccacatttaattcattttttgcatcattaacacttttattattag
tcattaacacttaacatactaaaaagtgaatttttctctaaatccataca
ttttgaatgcgatgttaccattttaattttctaaatgttcttaagacaat
aagcagttgatagttttagccactggtttttttttgtttgtttgtttgtt
tgtttgtttttactcataaggtattttatttgacagtttgtaatcagagg
gtactttaaaaaacacctgtcctttgaatagattgaaagtatttggaggg
ggctgatgagatgcctcacaggataaatgtgcctgttgctaaacctgagg
acatgagattggtaactgcacaatgcacagtagaaggaacaaactgatac
ctgcaagttgtccctttgcctacacatacacactaaataaataaaataat
aaaattaaatacattataagattagaacgtacagttatattaaaaaacaa
tttttatcctttgacaataatattatatataatgtatacattataaatag
aatatatatatgtatgtgtatatatatatatatcaagcccactctgttta
cacgttctccagtccaggagtgaggattgaaaagaaagagacaattagac
aatactgcagccaattttgaaattaaaggcaggtttattttttcccaatc
tgctttcataccattttaattacatgtaagaaataagagcaaacagtaca
ataaacacaaattgtccaggaacaggcaagtcattgagcaaagtcccatg
atcagtccagtgatcactcccatgatctctgcttctaagggtttgtcagg
atgaccaaaatatctgagcctacttccttgcccaagcccaaatcagattc
ttgcctgaagcctacttcttttgttccaccctcttaagattcctgcctga
acttacttccctgctctagcctagattagattctgcctgacttacttctg
tcttgtcatgtcagattctgctaagtagcccctcaagcgcccacaatata
taatcatgtacaatatccatatccataccatattatccttctctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_106401460_106401981
seq2: B6Ng01-220B07.b_224_740

seq1  TTTACTTCTTTTTTTTCTTTTTCCAATTCTTTTTTCTTTTTCCAATTTTT  50
      |||| |||||||||||||||||||||                    ||||
seq2  TTTAATTCTTTTTTTTCTTTTTCCAA--------------------TTTT  30

seq1  TATTAGTTATTTTCTTCATTTACATTTCAAATGCTATCCTGAAAATCCCC  100
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  TATTAGGTATTTTCTTCATTTACATTTCAAATGCTATCCTGAAAGTCCCC  80

seq1  TA------------TGCCCCCCCACC--CCCTCTCCCACTTCTTGGCCCT  136
      ||            |||  ||| |||  ||| ||||||||| ||||||||
seq2  TATATACCACCCCCTGCTACCCTACCCACCCACTCCCACTTTTTGGCCCT  130

seq1  GGTGTATCCCTATACTGGGGCAAATAAAGTTTGCAAGACCAAGGGGCCTC  186
      ||| |  || | |||||| ||| |||||||||||||||||||||||||| 
seq2  GGTATTCCCTTGTACTGGAGCATATAAAGTTTGCAAGACCAAGGGGCCTT  180

seq1  TCTTCCCAATAATGGCTGACTAGGCCATCTTCTGCGGTATATGCAGCTAG  236
      |||| ||||| ||||| | ||||||||||||||||   ||||||||||||
seq2  TCTTACCAATCATGGCCGTCTAGGCCATCTTCTGCTACATATGCAGCTAG  230

seq1  AGACAAGAGCTCTA-GGGGTACTGGTTAGTTCATATTGTTGTTCCACCTA  285
      ||||| |||||| | |||||||||||||||||||||| |||||||| |||
seq2  AGACATGAGCTCCAGGGGGTACTGGTTAGTTCATATTTTTGTTCCATCTA  280

seq1  TAAGGTTGCAGACCCCTTTAGCTCCTTGGGTGCTTTCTCTAGCTCCTCCA  335
      || ||||||||||||||| |||||||||||| ||||||||| ||||| ||
seq2  TAGGGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAACTCCTTCA  330

seq1  TTGGGGGTCCTGTGATCAATCCAATACCTGACTGTGAGCATCCACTTCTG  385
      ||||| | ||||||||| ||||||||  ||| ||||||| | | ||||||
seq2  TTGGGAGCCCTGTGATCCATCCAATAGATGATTGTGAGCTTACTCTTCTG  380

seq1  TGTTTGCCAGGCACTGGCATAGCCTCACAAGAGACAGCTATATCAGGGTC  435
      | | ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCCAGGCACTGGCATAGCCTCACAAGAGACAGCTATATCAGGGTC  430

seq1  CTTTCAGCAAAATCTTGCTGGCATATGCAATAGTGTCTGCGTTTGGTGGC  485
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTTTCAGCAAAATCTTGCTGGCATGTGCAATAGTGTCTGCGTTTGGTGGC  480

seq1  TGATTATGGGATGGATCCACAGGTGGGGCAGTCTCTG  522
      |||||||||||||||||| | ||||||| ||||||||
seq2  TGATTATGGGATGGATCCCCTGGTGGGGTAGTCTCTG  517


seq1: chr9_23962189_23963303
seq2: B6Ng01-220B07.g_66_1162

seq1  GAATTCCACATTTAATTCATTTTTTGCATCATTAACACTTTTATTATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATTTAATTCATTTTTTGCATCATTAACACTTTTATTATTAG  50

seq1  TCATTAACACTTAACATACTAAAAAGTGAATTTTTCTCTAAATCCATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAACACTTAACATACTAAAAAGTGAATTTTTCTCTAAATCCATACA  100

seq1  TTTTGAATGCGATGTTACCATTTTAATTTTCTAAATGTTCTTAAGACAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATGCGATGTTACCATTTTAATTTTCTAAATGTTCTTAAGACAAT  150

seq1  AAGCAGTTGATAGTTTTAGCCACTGGTTTTTTTTTGTTTGTTTGTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGTTGATAGTTTTAGCCACTGGTTTTTTTTTGTTTGTTTGTTTGTT  200

seq1  TGTTTGTTTTTACTCATAAGGTATTTTATTTGACAGTTTGTAATCAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTACTCATAAGGTATTTTATTTGACAGTTTGTAATCAGAGG  250

seq1  GTACTTTAAAAAACACCTGTCCTTTGAATAGATTGAAAGTATTTGGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTTAAAAAACACCTGTCCTTTGAATAGATTGAAAGTATTTGGAGGG  300

seq1  GGCTGATGAGATGCCTCACAGGATAAATGTGCCTGTTGCTAAACCTGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATGAGATGCCTCACAGGATAAATGTGCCTGTTGCTAAACCTGAGG  350

seq1  ACATGAGATTGGTAACTGCACAATGCACAGTAGAAGGAACAAACTGATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGATTGGTAACTGCACAATGCACAGTAGAAGGAACAAACTGATAC  400

seq1  CTGCAAGTTGTCCCTTTGCCTACACATACACACTAAATAAATAAAATAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGTTGTCCCTTTGCCTACACATACACACTAAATAAATAAAATAAT  450

seq1  AAAATTAAATACATTATAAGATTAGAACGTACAGTTATATTAAAAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAATACATTATAAGATTAGAACGTACAGTTATATTAAAAAACAA  500

seq1  TTTTTATCCTTTGACAATAATATTATATATAATGTATACATTATAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATCCTTTGACAATAATATTATATATAATGTATACATTATAAATAG  550

seq1  AATATATATATGTATGTGTATATATATATATATCAAGCCCACTCTGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATATGTATGTGTATATATATATATATCAAGCCCACTCTGTTTA  600

seq1  CACGTTCTCCAGTCCAGGAGTGAGGATTGAAAAGAAAGAGACAATTAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTCTCCAGTCCAGGAGTGAGGATTGAAAAGAAAGAGACAATTAGAC  650

seq1  AATACTGCAGCCAATTTTGAAATTAAAGGCAGGTTTATTTTTTCCCAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGCAGCCAATTTTGAAATTAAAGGCAGGTTTATTTTTTCCCAATC  700

seq1  TGCTTTCATACCATTTTAATTACATGTAAGAAATAAGAGCAAACAGTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCATACCATTTTAATTACATGTAAGAAATAAGAGCAAACAGTACA  750

seq1  ATAAACACAAATTGTCCAGGAACAGGCAAGTCATTGAGCAAAGTCCCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACACAAATTGTCCAGGAACAGGCAAGTCATTGAGCAAAGTCCCATG  800

seq1  ATCAGTCCAGTGATCACTCCCATGATCTCTGCTTCTAAGGGTTTGTCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCCAGTGATCACTCCCATGATCTCTGCTTCTAAGGGTTTGTCAGG  850

seq1  ATGACCAAAATATCTGAGCCTACTTCCTTGCCCAAGCCCAAAATCAGATT  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATGACCAAAATATCTGAGCCTACTTCCTTGCCCAAGCCC-AAATCAGATT  899

seq1  CTTGCCTGAAGCCTACTTCTTTTGTTCCACCCTCTTAAGATTCCTGCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTGAAGCCTACTTCTTTTGTTCCACCCTCTTAAGATTCCTGCCTG  949

seq1  AACTTACTTCCCTGCTCTAGCCTAAGATTAGATTCTGCCTGAACTTACTT  1000
      ||||||||||||||||||||||| ||||||||||||||||| ||||||||
seq2  AACTTACTTCCCTGCTCTAGCCT-AGATTAGATTCTGCCTG-ACTTACTT  997

seq1  CCTTGTCCTTGGTCAATGTCAGATTCCTGCTAAGTAGCCCCTCAAAGCGC  1050
      |  ||||  | ||| |||||||||| ||||||||||||||||| ||||||
seq2  C--TGTC--TTGTC-ATGTCAGATT-CTGCTAAGTAGCCCCTC-AAGCGC  1040

seq1  CCAACAATATATAATCATGTTAACAATATTCAATATTCCATACCCAATAT  1100
      || |||||||||||||||||  |||||| || ||| ||||||||  ||||
seq2  CC-ACAATATATAATCATGT--ACAATA-TCCATA-TCCATACC--ATAT  1083

seq1  TATCCTTTCTCTTTT  1115
      ||||| |||||||||
seq2  TATCC-TTCTCTTTT  1097


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