BAC Information

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BAC

Clone NameB6Ng01-220J10
Chromosome13 (Build37)
Map Location 103,686,329 - 103,855,899
singlet/doubletdoublet
Overlap geneMast4
Upstream geneCd180
Downstream geneEG621312, EG432800, LOC432801, LOC100040045, Ppia-ps13_1282.1, Sfrs12, Erbb2ip, LOC100040086, D130037M23Rik, Nln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220J10.bB6Ng01-220J10.g
ACCGA036109GA036110
length1,025851
definitionB6Ng01-220J10.b B6Ng01-220J10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,686,329 - 103,687,349)(103,855,052 - 103,855,899)
sequence
gaattctctgtttatgtggacgggcactggggtgaaagatagtaggtaaa
taactttgatccttatacgcaaaaatcagactgactccatctaccattaa
gtaaggtgcttgatgtttgattcaggtagcctatttggaaaatgcttttg
atctttgcatccaaagtctagagtttagccaagtaaaaggaatacttttt
acaggaattctttctccaggtccaagatcaacaagtccttaaactcagac
ttgggaaagaacattacataatagccacttaatggctattgttttacagt
acaaagggttcatttggcatttcctagagagctttattcaggtggtagct
tttcccatgacagacatactctcttaatcccagccctccatgaatctata
aaagaaaacatttaataactgtaatttccaaggtagagacatctagcatg
ctgcattccacaagacacacatgttgtatgtgaatggggaatatacgttg
ttttttttgtttttttgttttttgttgtttttttaggtaagctacaggtg
ctgtgacttccttcagatttaacagccaagaagcttggcagtgtgtaggt
aatcctccaagggtgactcttaaggaggtggcatagtcaatcctgagaca
taaacttgtgctgtaatatttaaaattagaacaaacatggctaaacgagc
atctatatttctcatggtgaagaatgggcctgctgagctcagctttctcc
cctcgaagcctatggctatcgggctgtgatctcagcaagatccaaatatg
acccatcaggtggctcgctccgcccaggcatttgctgggaacctaagtca
ttagtctaaaagacatgaacttccatgtcaggttagaaacttcccagact
catggagagctgggttctctgctctaaggagtttgaaggttatgttgaga
tcctgcactttggcctgcaattatagtggataaaagacacctcaactaac
aaaaccaagggtcattgataattga

gaattcaaagtaagggtttcatcacgaattcaatcccggggttttctttt
ggcttgcaactgcagacgtaggagagtcacattattgtgaaaccttgaca
aaagagaaatcccgtgattagatgcgggctttatgcataatctctagttt
gcatcctcagcacttttggggaagtgaaagccatgggagaaaagcactag
gtggcttttctaccccaattgtttcctctctccctggcagatccacagct
cacagcccacagccctgtgactttttttgaagcagcagtacagtcttgaa
cttgaagcgaggcctgagggctcagcagctatgactgggcagaggataga
agcagccaacccgcagttgctccctccctagttgcagcagcctaggtttc
cttggacatttttttttcccctatctccctgtctctgtgcctgcttccca
ctcctcttttccccatgtctcattctcccttctcttcctgtctctcctct
cttcctacctcagctactgtctgccaaggcatcttggcctctgggtgcct
ggttggctttggcctggggtggagatcccagcaggagactggagggaagc
gagaagaacagaaagtaaggccacagtcactgcccttctaccctgcttgt
ggcactgacccaggtcagccgagggctgtcctggtacaaaagggctttct
cagtgttccacttcagatttttggaagcaactatctcccttcgagaggca
gccagcagttctgtgtaagcactctgtcaaatgctttacagaccctgcct
ccaaacccgacagtgccttctccatcctgcagaattctgactggaagcct
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_103686329_103687349
seq2: B6Ng01-220J10.b_47_1071

seq1  GAATTCTCTGTTTATGTGGACGGGCACTGGGGTGAAAGATAGTAGGTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGTTTATGTGGACGGGCACTGGGGTGAAAGATAGTAGGTAAA  50

seq1  TAACTTTGATCCTTATACGCAAAAATCAGACTGACTCCATCTACCATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTTGATCCTTATACGCAAAAATCAGACTGACTCCATCTACCATTAA  100

seq1  GTAAGGTGCTTGATGTTTGATTCAGGTAGCCTATTTGGAAAATGCTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGTGCTTGATGTTTGATTCAGGTAGCCTATTTGGAAAATGCTTTTG  150

seq1  ATCTTTGCATCCAAAGTCTAGAGTTTAGCCAAGTAAAAGGAATACTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGCATCCAAAGTCTAGAGTTTAGCCAAGTAAAAGGAATACTTTTT  200

seq1  ACAGGAATTCTTTCTCCAGGTCCAAGATCAACAAGTCCTTAAACTCAGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATTCTTTCTCCAGGTCCAAGATCAACAAGTCCTTAAACTCAGAC  250

seq1  TTGGGAAAGAACATTACATAATAGCCACTTAATGGCTATTGTTTTACAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAAGAACATTACATAATAGCCACTTAATGGCTATTGTTTTACAGT  300

seq1  ACAAAGGGTTCATTTGGCATTTCCTAGAGAGCTTTATTCAGGTGGTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGGTTCATTTGGCATTTCCTAGAGAGCTTTATTCAGGTGGTAGCT  350

seq1  TTTCCCATGACAGACATACTCTCTTAATCCCAGCCCTCCATGAATCTATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCATGACAGACATACTCTCTTAATCCCAGCCCTCCATGAATCTATA  400

seq1  AAAGAAAACATTTAATAACTGTAATTTCCAAGGTAGAGACATCTAGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAACATTTAATAACTGTAATTTCCAAGGTAGAGACATCTAGCATG  450

seq1  CTGCATTCCACAAGACACACATGTTGTATGTGAATGGGGAATATACGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTCCACAAGACACACATGTTGTATGTGAATGGGGAATATACGTTG  500

seq1  TTTTTTTTGTTTTTTTGTTTTTTGTTGTTTTTTTAGGTAAGCTACAGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTGTTTTTTTGTTTTTTGTTGTTTTTTTAGGTAAGCTACAGGTG  550

seq1  CTGTGACTTCCTTCAGATTTAACAGCCAAGAAGCTTGGCAGTGTGTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGACTTCCTTCAGATTTAACAGCCAAGAAGCTTGGCAGTGTGTAGGT  600

seq1  AATCCTCCAAGGGTGACTCTTAAGGAGGTGGCATAGTCAATCCTGAGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCAAGGGTGACTCTTAAGGAGGTGGCATAGTCAATCCTGAGACA  650

seq1  TAAACTTGTGCTGTAATATTTAAAATTAGAACAAACATGGCTAAACGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTGTGCTGTAATATTTAAAATTAGAACAAACATGGCTAAACGAGC  700

seq1  ATCTATATTTCTCATGGTGAAGAATGGGCCTGCTGAGCTCAGCTTTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATATTTCTCATGGTGAAGAATGGGCCTGCTGAGCTCAGCTTTCTCC  750

seq1  CCTCGAAGCCTATGGCTATC-GGCTGTGATCTCAGCAAGATCCAAATATG  799
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CCTCGAAGCCTATGGCTATCGGGCTGTGATCTCAGCAAGATCCAAATATG  800

seq1  ACCCATCAGGTGGCTCGCTCCGCCCAGGCAATTTGCTGGGAACCTAAGTC  849
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACCCATCAGGTGGCTCGCTCCGCCCAGGC-ATTTGCTGGGAACCTAAGTC  849

seq1  ATTAGTCTAAAAGACATGAACTTCCATGTCAGGTTAGAAACTTCCCAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCTAAAAGACATGAACTTCCATGTCAGGTTAGAAACTTCCCAGAC  899

seq1  TCATGGAGAGCT-GGTTCTCTGCTCTAAAGAGGTTGAGGTTTATGTTGAG  948
      |||||||||||| ||||||||||||||| ||| |||| | ||||||||||
seq2  TCATGGAGAGCTGGGTTCTCTGCTCTAAGGAGTTTGAAGGTTATGTTGAG  949

seq1  AT-CTGCACTTT-GCCTGCAATTATAGTGGATAAAAGACA-CTACACTAA  995
      || ||||||||| ||||||||||||||||||||||||||| ||  |||||
seq2  ATCCTGCACTTTGGCCTGCAATTATAGTGGATAAAAGACACCTCAACTAA  999

seq1  CAAAACC-AGGGTCATTGATAAATTGA  1021
      ||||||| |||||||||||| ||||||
seq2  CAAAACCAAGGGTCATTGAT-AATTGA  1025


seq1: chr13_103855052_103855899
seq2: B6Ng01-220J10.g_69_919 (reverse)

seq1  TAGGCTTCCAGTCAGAATTCTGCAGGATGGAGAAGGCACTGTCGGGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTTCCAGTCAGAATTCTGCAGGATGGAGAAGGCACTGTCGGGTTTG  50

seq1  GAGGCAGGGTCTGTAAAGCATTTGACAGAGTGCTTACACAGGACTGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAGGCAGGGTCTGTAAAGCATTTGACAGAGTGCTTACACAGAACTGCTGG  100

seq1  CTGCCTCTCGAAGGGAGATAGTTGCTTCC-AAAATCTGAAGTGGAACACT  149
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTGCCTCTCGAAGGGAGATAGTTGCTTCCAAAAATCTGAAGTGGAACACT  150

seq1  GAG-AAGCCCTTTTGTACCAGGACAGCCCTCGGCTGACCTGGGTCAGTGC  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCCCTTTTGTACCAGGACAGCCCTCGGCTGACCTGGGTCAGTGC  200

seq1  CACAAGCA-GGTAGAAGGGCAGTGACTGTGGCCTTACTTTCTGTTCTTCT  247
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGCAGGGTAGAAGGGCAGTGACTGTGGCCTTACTTTCTGTTCTTCT  250

seq1  CGCTTCCCTCCAGTCTCCTGCTGGGATCTCCACCCCAGGCCAAAGCCAAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTCCCTCCAGTCTCCTGCTGGGATCTCCACCCCAGGCCAAAGCCAAC  300

seq1  CAGGCACCCAGAGGCCAAGATGCCTTGGCAGACAGTAGCTGAGGTAGGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACCCAGAGGCCAAGATGCCTTGGCAGACAGTAGCTGAGGTAGGAA  350

seq1  GAGAGGAGAGACAGGAAGAGAAGGGAGAATGAGACATGGGGAAAAGAGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGAGACAGGAAGAGAAGGGAGAATGAGACATGGGGAAAAGAGGA  400

seq1  GTGGGAAGCAGGCACAGAGACAGGGAGATAGGGGAAAAAAAAATGTCCAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGCAGGCACAGAGACAGGGAGATAGGGGAAAAAAAAATGTCCAA  450

seq1  GGAAACCTAGGCTGCTGCAACTAGGGAGGGAGCAACTGCGGGTTGGCTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACCTAGGCTGCTGCAACTAGGGAGGGAGCAACTGCGGGTTGGCTGC  500

seq1  TTCTATCCTCTGCCCAGTCATAGCTGCTGAGCCCTCAGGCCTCGCTTCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATCCTCTGCCCAGTCATAGCTGCTGAGCCCTCAGGCCTCGCTTCAA  550

seq1  GTTCAAGACTGTACTGCTGCTTCAAAAAAAGTCACAGGGCTGTGGGCTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGACTGTACTGCTGCTTCAAAAAAAGTCACAGGGCTGTGGGCTGT  600

seq1  GAGCTGTGGATCTGCCAGGGAGAGAGGAAACAATTGGGGTAGAAAAGCCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTGGATCTGCCAGGGAGAGAGGAAACAATTGGGGTAGAAAAGCCA  650

seq1  CCTAGTGCTTTTCTCCCATGGCTTTCACTTCCCCAAAAGTGCTGAGGATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTGCTTTTCTCCCATGGCTTTCACTTCCCCAAAAGTGCTGAGGATG  700

seq1  CAAACTAGAGATTATGCATAAAGCCCGCATCTAATCACGGGATTTCTCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTAGAGATTATGCATAAAGCCCGCATCTAATCACGGGATTTCTCTT  750

seq1  TTGTCAAGGTTTCACAATAATGTGACTCTCCTACGTCTGCAGTTGCAAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGGTTTCACAATAATGTGACTCTCCTACGTCTGCAGTTGCAAGC  800

seq1  CAAAAGAAAACCCCGGGATTGAATTCGTGATGAAACCCTTACTTTGAATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAAACCCCGGGATTGAATTCGTGATGAAACCCTTACTTTGAATT  850

seq1  C  848
      |
seq2  C  851


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