BAC Information

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BAC

Clone NameB6Ng01-220K13
Chromosome13 (Build37)
Map Location 46,453,776 - 46,601,920
singlet/doubletdoublet
Overlap geneRbm24, Cap2
Upstream geneMylip, Gmpr, Atxn1, 5033430I15Rik, ENSMUSG00000062282, Gm1574
Downstream geneC78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220K13.bB6Ng01-220K13.g
ACCGA036161GA036162
length1,0721,097
definitionB6Ng01-220K13.b B6Ng01-220K13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,453,776 - 46,454,788)(46,600,840 - 46,601,920)
sequence
gaattctcaactgaggaatactgaagggttgagaagcacttgaaaaaaat
ttcaacgttcttagtcaccagggaaatgcaaatcaaaacaaccctgagat
tccacttcacaccagtcagaagttaccaattctgagtcctgctctgttat
agaaaggatagtgtgatgtggtttcctgcctatggagcagagccagtagg
gcctgggcctccacaagtatttatagttggtaggcgtgagttgtttagca
tgtgtgtgtgtgtgtgtgtgtgttcatgttcctccatcaagaaatattcc
ccctgccaaggttattgtggaatatcctctatgccaaggttaatggctcc
atgataatcaaagacagcgcaagtctggaaggcaatggtgtgtctaatgt
cttagcaaaaatggtaaatgctgtgaccttccaaacagcccttaaggctg
tgggaaagcactataaaaacatgagttctaaaatatatacttctcaacta
tgcaaaatgtaagggtgcaatatgaattatatgaggggcttcacagactg
tcttcgtttattcccagttcacatggttcaagcgtagccccccaaagttt
attcttcttgatttgctcaagaccaactcttcgaatcagcattcatgacc
ccagctccttgattcttagaaaaagccagcaagcacattttgtttttcaa
cattgcaaatgaattcagagatctgactgcctttgtaagcacagacaata
cacttagctgggtgggagatgttatacataaagacttacaaaagattcct
aaatgtatgaaagaagactcaagctgaggtaggagagttgggcgggaagg
gaagtgaggaaggttttacacaagactgccaaaagaggaaggctgttcct
ctcccttcccattcattaccctattaacaacctctgccctacctgccagg
actagaaccatcctaatagcactggcctagtgcagagacattctggagtt
gtctgaatgttagtctgtgcttccttgtaactaccaaaccaaacaccccc
tgggtgggaagagttgacaaat
gaattcaggggccgtggaggaaaaacctgttaggaacaaatatccctggg
gttgtcggagctgctgtgaaacagagtcctctggaggtgacaagatggct
ctactcatgtcctcctagcagccgtggatgtagaacaagttcaaagcagt
cttcattctagcatggtgggggctgggcactcaggagcccctattcctca
ctgagaagccattgacagtggatggctccgagggggagggaaagaaagtc
ggtttccttaagacaggaatgaaaggtgaatgtggtaaaaaaaatacttt
gtaaacatatatgaaaaattttaaaagtaataaaaatattgtatttaaaa
atacactaaaagccggtggtgatggcccacagtttttatcccagcatggg
aggcagaggtaggtgggtctctgagtacaaggctagcctggtctacagag
caagttctgggacagccagggctacacagagaaaccttgtttcaaagaaa
ctaatcaagtagaagaaagacactccagagtcttttcgcagcccccctgc
cccatcctagccaataataactgatctgttcataaagatttcttagaaac
agtgctccaggagtggtttcctgcattatgtggtctttttcattacgtgg
cttctttcacttagcaggatgctctcaaggttcatagtatggcacccctt
tctgtagacacacctatgtgcacacagaggtcagaggtcaatgtcagatg
tccttcctcagtcactctcctgtatctgcttccccactgctgggaaccca
tgcacaagccactgcacagggtttgtaggtgggttgctgaggctcagact
cagttttcatgactgagcccacaagcactgagccagctctgccttccttt
tttaaataatacaccattgcacagatggaccaccattttcctacccatca
agtagattgggttttcctcccctaccctccctagtgtttcaatcctctta
gcctgtaagcattgttagccaccaagcgaaggcatcgggtgtataataga
ttttatgtccctcctttaagttcatttttgaagcatgaactgagatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_46453776_46454788
seq2: B6Ng01-220K13.b_89_1111

seq1  TTTCAACGTTCTTAGTCACCAGGGAAATGCAAATCAAAACAACCCTGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAACGTTCTTAGTCACCAGGGAAATGCAAATCAAAACAACCCTGAGA  50

seq1  TTCCACTTCACACCAGTCAGAAGTTACCAATTCTGAGTCCTGCTCTGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTTCACACCAGTCAGAAGTTACCAATTCTGAGTCCTGCTCTGTTA  100

seq1  TAGAAAGGATAGTGTGATGTGGTTTCCTGCCTATGGAGCAGAGCCAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGGATAGTGTGATGTGGTTTCCTGCCTATGGAGCAGAGCCAGTAG  150

seq1  GGCCTGGGCCTCCACAAGTATTTATAGTTGGTAGGCGTGAGTTGTTTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGGCCTCCACAAGTATTTATAGTTGGTAGGCGTGAGTTGTTTAGC  200

seq1  ATGTGTGTGTGTGTGTGTGTGTGTTCATGTTCCTCCATCAAGAAATATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTGTGTGTGTGTGTGTTCATGTTCCTCCATCAAGAAATATTC  250

seq1  CCCCTGCCAAGGTTATTGTGGAATATCCTCTATGCCAAGGTTAATGGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCCAAGGTTATTGTGGAATATCCTCTATGCCAAGGTTAATGGCTC  300

seq1  CATGATAATCAAAGACAGCGCAAGTCTGGAAGGCAATGGTGTGTCTAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATAATCAAAGACAGCGCAAGTCTGGAAGGCAATGGTGTGTCTAATG  350

seq1  TCTTAGCAAAAATGGTAAATGCTGTGACCTTCCAAACAGCCCTTAAGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCAAAAATGGTAAATGCTGTGACCTTCCAAACAGCCCTTAAGGCT  400

seq1  GTGGGAAAGCACTATAAAAACATGAGTTCTAAAATATATACTTCTCAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAAGCACTATAAAAACATGAGTTCTAAAATATATACTTCTCAACT  450

seq1  ATGCAAAATGTAAGGGTGCAATATGAATTATATGAGGGGCTTCACAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAATGTAAGGGTGCAATATGAATTATATGAGGGGCTTCACAGACT  500

seq1  GTCTTCGTTTATTCCCAGTTCACATGGTTCAAGCGTAGCCCCCCAAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCGTTTATTCCCAGTTCACATGGTTCAAGCGTAGCCCCCCAAAGTT  550

seq1  TATTCTTCTTGATTTGCTCAAGACCAACTCTTCGAATCAGCATTCATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCTTGATTTGCTCAAGACCAACTCTTCGAATCAGCATTCATGAC  600

seq1  CCCAGCTCCTTGATTCTTAGAAAAAGCCAGCAAGCACATTTTGTTTTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTCCTTGATTCTTAGAAAAAGCCAGCAAGCACATTTTGTTTTTCA  650

seq1  ACATTGCAAATGAATTCAGAGATCTGACTGCCTTTGTAAGCACAGACAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCAAATGAATTCAGAGATCTGACTGCCTTTGTAAGCACAGACAAT  700

seq1  ACACTTAGCTGGGTGGGAGATGTTATACATAAAGACTTACAAAAGATTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAGCTGGGTGGGAGATGTTATACATAAAGACTTACAAAAGATTCC  750

seq1  TAAATGTATGAAAGAAGACTCAAGCTGAGGTAGGAGAGTTGGGCGGGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTATGAAAGAAGACTCAAGCTGAGGTAGGAGAGTTGGGCGGGAAG  800

seq1  GGAAGTGAGGAAGGTTTTACACAAAGACTGCCAAAAGAGGAAGGCTGTTC  850
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GGAAGTGAGGAAGGTTTTACAC-AAGACTGCCAAAAGAGGAAGGCTGTTC  849

seq1  CTCTCCC-TCCCATTCATTACCCTATTAACAACCTCTGCCCTACCTGCCA  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTTCCCATTCATTACCCTATTAACAACCTCTGCCCTACCTGCCA  899

seq1  GGACTAGAACCATC--TATAGCCACTGGCCTAGTGCAGAGACATTCTGGA  947
      ||||||||||||||   |||| ||||||||||||||||||||||||||||
seq2  GGACTAGAACCATCCTAATAG-CACTGGCCTAGTGCAGAGACATTCTGGA  948

seq1  G-TGTCTGAATG-TAGTCTGTGC-TCCTTGTAAC-ACCAAA-CAAACA-C  991
      | |||||||||| |||||||||| |||||||||| |||||| |||||| |
seq2  GTTGTCTGAATGTTAGTCTGTGCTTCCTTGTAACTACCAAACCAAACACC  998

seq1  CCCTGGGTGG--AGAG-TGACAAAT  1013
      ||||||||||  |||| ||||||||
seq2  CCCTGGGTGGGAAGAGTTGACAAAT  1023

seq1: chr13_46600840_46601920
seq2: B6Ng01-220K13.g_68_1164 (reverse)

seq1  AATCTCAGTCCTGCCTCCAAAAATGAAATTTAAAGAGGGACCATAAAAAC  50
      ||||||||| |   || |||||||||| || || |||||| ||||||| |
seq2  AATCTCAGTTCATGCTTCAAAAATGAACTTAAAGGAGGGA-CATAAAATC  49

seq1  TA-TATACA-CCGA-GCC-TCGC-TGGT-GCTAACAATGCTAACA-GCTA  93
      || |||||| |||| ||| |||| |||| |||||||||||| ||| ||||
seq2  TATTATACACCCGATGCCTTCGCTTGGTGGCTAACAATGCTTACAGGCTA  99

seq1  AGA-GATGGAAACACTAGGGA-GGTAGGGGAGGAAA--CCCATCTAC-TG  138
      ||| ||| ||||||||||||| ||||||||||||||  || |||||| ||
seq2  AGAGGATTGAAACACTAGGGAGGGTAGGGGAGGAAAACCCAATCTACTTG  149

seq1  ATGGGTAGGAAAAT-GTGGTCCATCTGTGCAATGGTGTATTATT--AAAA  185
      |||||||||||||| |||||||||||||||||||||||||||||  ||||
seq2  ATGGGTAGGAAAATGGTGGTCCATCTGTGCAATGGTGTATTATTTAAAAA  199

seq1  AGGAAGGCAGAGCTGGCTCAGTGCTTGT-GGCTCAGTCATGAAAACCTGA  234
      |||||||||||||||||||||||||||| |||||||||||||||| ||||
seq2  AGGAAGGCAGAGCTGGCTCAGTGCTTGTGGGCTCAGTCATGAAAA-CTGA  248

seq1  GTCTGAGCCTCAGC-ACCCACCTACAAACCCTGTGCAGTGGCTTGTGCAT  283
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTCTGAGCCTCAGCAACCCACCTACAAACCCTGTGCAGTGGCTTGTGCAT  298

seq1  GGGTTCCCAGCAGTGGGGAAGCAGATACAGGAGAGTGACTGAGGAA-GAC  332
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGTTCCCAGCAGTGGGGAAGCAGATACAGGAGAGTGACTGAGGAAGGAC  348

seq1  ATCTGACATTGACCTCTGACCTCTGTGTGCACATAGGTGTGTCTACAGAA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACATTGACCTCTGACCTCTGTGTGCACATAGGTGTGTCTACAGAA  398

seq1  AGGGGTGCCATACTATGAACCTTGAGAGCATCCTGCTAAGTGAAAGAAGC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGCCATACTATGAACCTTGAGAGCATCCTGCTAAGTGAAAGAAGC  448

seq1  CACGTAATGAAAAAGACCACATAATGCAGGAAACCACTCCTGGAGCACTG  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTAATGAAAAAGACCACATAATGCAGGAAACCACTCCTGGAGCACTG  498

seq1  TTTCTAAGAAATCTTTATGAACAGATCAGTTATTATTGGCTAGGATGGGG  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAGAAATCTTTATGAACAGATCAGTTATTATTGGCTAGGATGGGG  548

seq1  CAGGGGGGCTGCGAAAAGACTCTGGAGTGTCTTTCTTCTACTTGATTAGT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGGCTGCGAAAAGACTCTGGAGTGTCTTTCTTCTACTTGATTAGT  598

seq1  TTCTTTGAAACAAGGTTTCTCTGTGTAGCCCTGGCTGTCCCAGAACTTGC  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAAACAAGGTTTCTCTGTGTAGCCCTGGCTGTCCCAGAACTTGC  648

seq1  TCTGTAGACCAGGCTAGCCTTGTACTCAGAGACCCACCTACCTCTGCCTC  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGACCAGGCTAGCCTTGTACTCAGAGACCCACCTACCTCTGCCTC  698

seq1  CCATGCTGGGATAAAAACTGTGGGCCATCACCACCGGCTTTTAGTGTATT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCTGGGATAAAAACTGTGGGCCATCACCACCGGCTTTTAGTGTATT  748

seq1  TTTAAATACAATATTTTTATTACTTTTAAAATTTTTCATATATGTTTACA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATACAATATTTTTATTACTTTTAAAATTTTTCATATATGTTTACA  798

seq1  AAGTATTTTTTTTACCACATTCACCTTTCATTCCTGTCTTAAGGAAACCG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTTTTTTTACCACATTCACCTTTCATTCCTGTCTTAAGGAAACCG  848

seq1  ACTTTCTTTCCCTCCCCCTCGGAGCCATCCACTGTCAATGGCTTCTCAGT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTCCCTCCCCCTCGGAGCCATCCACTGTCAATGGCTTCTCAGT  898

seq1  GAGGAATAGGGGCTCCTGAGTGCCCAGCCCCCACCATGCTAGAATGAAGA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATAGGGGCTCCTGAGTGCCCAGCCCCCACCATGCTAGAATGAAGA  948

seq1  CTGCTTTGAACTTGTTCTACATCCACGGCTGCTAGGAGGACATGAGTAGA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTGAACTTGTTCTACATCCACGGCTGCTAGGAGGACATGAGTAGA  998

seq1  GCCATCTTGTCACCTCCAGAGGACTCTGTTTCACAGCAGCTCCGACAACC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTTGTCACCTCCAGAGGACTCTGTTTCACAGCAGCTCCGACAACC  1048

seq1  CCAGGGATATTTGTTCCTAACAGGTTTTTCCTCCACGGCCCCTGAATTC  1081
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGATATTTGTTCCTAACAGGTTTTTCCTCCACGGCCCCTGAATTC  1097