BAC Information

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BAC

Clone NameB6Ng01-221D01
Chromosome13 (Build37)15 (Build37)
Map Location 44,279,056 - 44,280,18996,298,235 - 96,298,285
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGfod1, Sirt5, Nol7, Ranbp9, LOC637627, Ccdc90a, Rnf182, LOC100039403, Cd83, LOC100039432, A730030A06
Downstream geneEG637868, EG667157, Jarid2, Dtnbp1, Hsp25-ps1, LOC100039502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221D01.bB6Ng01-221D01.g
ACCGA036547GA036548
length1,136964
definitionB6Ng01-221D01.b B6Ng01-221D01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(44,279,056 - 44,280,189)(96,298,235 - 96,298,285)
sequence
gaattcctgtggaaacagcattttctttgagtctgttgttttaatagttt
gatagtcaaagggaagggcaaagtatctctttagaataccttcatctctg
tcaggatggtagaattgcacattctacgtactgggacaagaccaggcaag
catttctctgcttcgagctacccaagtcctacttgatgcctccctgtctt
aatatcataagatatcactcttccctggtttccttcctcattacaggact
ttgtccagactcctttcctgcctctcttcctacactcaagttcaactgcc
ccaggactgggctgatggtggtcatctaggcatgtactgtgctttctccc
tctggggtattatccagggatggtcatctaggagtgtactgtgctttctg
cctcttgggtatcatccaaccatgatctgtattttgctgataccaacatt
tgtcattttcctttgaccttgacatttgcatttctagctgccttctagga
ggatggtcactttggctacccaggagctagcacaaattatacatctaaaa
ggtatccttggtttggtccccaaagctacccctctgccacgcctaaggaa
gtgctgcctctgcctattcagttgttcaactaaagaccagaagtcatccc
ttgtcttccccattcacttctagtgctgcccatctcagcctccaggacag
ccctatatgtcaccatcatatcctatggtctgattgtctgggaaccagtg
taccagggtctccatttactatacaacactgtttccttagcagccagcat
tatcttttaaacacatgttattgtagttcttcttgatcactatctccagc
tacaggagataaaacccaaagtctttcatgtcaacatgctcctaaacaac
ctgcctcccacctgatatccaactttattcctctccaattcccacttctg
ctataatgtcttcttatgggggatcagacaccacaacacccataccccag
acagaacagtggaggtagctctgttctaggaaatgtagcctgtggaccct
actgggagaccacagcagggattcagtacagaatgtagagaaggggaccc
agattcagcaaacgcctcaggctagcaccaaaagtg
gaattccagggattccaccctcttctctttcgaagttctgctttgacaga
tgtgccaccatgcccagctgtggacactggagttgcaaactccactcctc
atctttgccaacagaaccatctcttcatcctcgtcccccttgtcatttgt
tttgttttgttttgcaaaacaaacttgaacacaaactctttcagctaaaa
acaaagaatgcatatttaataaaaacttaaatcccaaataaccaaatctc
aaaaatgtggatggtgaatttgactctggcacacatgcttattgtcattg
ggcatggaaagcacttggagtgacatagagaccggatgtgaactcagaag
ataaaatcttttttttttttaaatgttatttaaaagttagttttaacatg
tgtcaatatgtttatatgctatgctgggaagtatgactttctcataaaaa
atgagaattcgtccatgttaattttgcttctttatttttttcgtgtgctg
ctagtatgatcggagggctccattcacagaacttcagacgtggctaagca
atgcttgcttagatcaagttcttcatgagaaaaccaattagttaaaacaa
tgttttgacttttatttccctctcaagtcacgggctccaagtaaatgttt
tggaagttcgtcctctcaaagaaagacagccgataaacaacgcagggcaa
gggtagcagagacgcggcactttcagattttgagggcacacagcgaagtg
ggagagagtgttactaccagttaagaaatccacgggaaacaaacaacttg
gaactggatgcagtgtattcatagtttataattgcacccgaatcagctgt
gagagtctcctcaccaaatagaagccacagttgacagacataaacatttt
ctatttatacacaggaaaatcgaactaataaaatatttgtgattgagatg
atacagaactgaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_44279056_44280189
seq2: B6Ng01-221D01.b_43_1178

seq1  GAATTCCTGTGGAAACAGCATTTTCTTTGAGTCTGTTGTTTTAATAGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGGAAACAGCATTTTCTTTGAGTCTGTTGTTTTAATAGTTT  50

seq1  GATAGTCAAAGGGAAGGGCAAAGTATCTCTTTAGAATACCTTCATCTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCAAAGGGAAGGGCAAAGTATCTCTTTAGAATACCTTCATCTCTG  100

seq1  TCAGGATGGTAGAATTGCACATTCTACGTACTGGGACAAGACCAGGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGGTAGAATTGCACATTCTACGTACTGGGACAAGACCAGGCAAG  150

seq1  CATTTCTCTGCTTCGAGCTACCCAAGTCCTACTTGATGCCTCCCTGTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTCTGCTTCGAGCTACCCAAGTCCTACTTGATGCCTCCCTGTCTT  200

seq1  AATATCATAAGATATCACTCTTCCCTGGTTTCCTTCCTCATTACAGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATAAGATATCACTCTTCCCTGGTTTCCTTCCTCATTACAGGACT  250

seq1  TTGTCCAGACTCCTTTCCTGCCTCTCTTCCTACACTCAAGTTCAACTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCAGACTCCTTTCCTGCCTCTCTTCCTACACTCAAGTTCAACTGCC  300

seq1  CCAGGACTGGGCTGATGGTGGTCATCTAGGCATGTACTGTGCTTTCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTGGGCTGATGGTGGTCATCTAGGCATGTACTGTGCTTTCTCCC  350

seq1  TCTGGGGTATTATCCAGGGATGGTCATCTAGGAGTGTACTGTGCTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGTATTATCCAGGGATGGTCATCTAGGAGTGTACTGTGCTTTCTG  400

seq1  CCTCTTGGGTATCATCCAACCATGATCTGTATTTTGCTGATACCAACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGGGTATCATCCAACCATGATCTGTATTTTGCTGATACCAACATT  450

seq1  TGTCATTTTCCTTTGACCTTGACATTTGCATTTCTAGCTGCCTTCTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTTTCCTTTGACCTTGACATTTGCATTTCTAGCTGCCTTCTAGGA  500

seq1  GGATGGTCACTTTGGCTACCCAGGAGCTAGCACAAATTATACATCTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTCACTTTGGCTACCCAGGAGCTAGCACAAATTATACATCTAAAA  550

seq1  GGTATCCTTGGTTTGGTCCCCAAAGCTACCCCTCTGCCACGCCTAAGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCTTGGTTTGGTCCCCAAAGCTACCCCTCTGCCACGCCTAAGGAA  600

seq1  GTGCTGCCTCTGCCTATTCAGTTGTTCAACTAAAGACCAGAAGTCATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCCTCTGCCTATTCAGTTGTTCAACTAAAGACCAGAAGTCATCCC  650

seq1  TTGTCTTCCCCATTCACTTCTAGTGCTGCCCATCTCAGCCTCCAGGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCCCCATTCACTTCTAGTGCTGCCCATCTCAGCCTCCAGGACAG  700

seq1  CCCTATATGTCACCATCATATCCTATGGTCTGATTGTCTGGGAACCAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATATGTCACCATCATATCCTATGGTCTGATTGTCTGGGAACCAGTG  750

seq1  TACCAGGGTCTCCATTTACTATACAACACTGTTTCCTTAGCAGCCAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGGGTCTCCATTTACTATACAACACTGTTTCCTTAGCAGCCAGCAT  800

seq1  TATCTTTTAAACACATGTTATTGTAGTTCTTCTTGATCACTATCTCCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTAAACACATGTTATTGTAGTTCTTCTTGATCACTATCTCCAGC  850

seq1  TACAGGAGATAAAACCCAAAGTCTTTCATGTCAACATGCTCCTAAACAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGAGATAAAACCCAAAGTCTTTCATGTCAACATGCTCCTAAACAAC  900

seq1  CTGCCTCCCACCTGATATCCAACTTTATTCCTCTCCAATTCCCACTTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCCCACCTGATATCCAACTTTATTCCTCTCCAATTCCCACTTCTG  950

seq1  CTATAATGTCTTCTTATGGGGGATCAGACACCACAACACCCATACCCCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATGTCTTCTTATGGGGGATCAGACACCACAACACCCATACCCCAG  1000

seq1  ACAGAACAGTGGAGGTAGCTCTGTTCTAGGAAATGTAGCCTGTGGA-CCT  1049
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAGAACAGTGGAGGTAGCTCTGTTCTAGGAAATGTAGCCTGTGGACCCT  1050

seq1  ACTGGGAGACCACAGCAGGGATTCAGTACAG-ATGTAGAGAAGGGGACAC  1098
      ||||||||||||||||||||||||||||||| |||||||||||||||| |
seq2  ACTGGGAGACCACAGCAGGGATTCAGTACAGAATGTAGAGAAGGGGACCC  1100

seq1  AGATTCAGCAAACG-CTCAGGCAAGCACCAGAAAGTG  1134
      |||||||||||||| ||||||| ||||||| ||||||
seq2  AGATTCAGCAAACGCCTCAGGCTAGCACCA-AAAGTG  1136

seq1: chr15_96298235_96298285
seq2: B6Ng01-221D01.g_422_682 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  AAATAAAAGTCAAAACATTGTTTTAACTAATTGGTTTTCTCATGAAGAAC  50

seq1  --------------------------------------------------  0
                                                        
seq2  TTGATCTAAGCAAGCATTGCTTAGCCACGTCTGAAGTTCTGTGAATGGAG  100

seq1  --------------------------------------------------  0
                                                        
seq2  CCCTCCGATCATACTAGCAGCACACGAAAAAAATAAAGAAGCAAAATTAA  150

seq1  --------------------------------------------------  0
                                                        
seq2  CATGGACGAATTCTCATTTTTTATGAGAAAGTCATACTTCCCAGCATAGC  200

seq1  AAATAAA-----------AAGTCAAAAAATACTTTTAAAAAGACATTTAA  39
      | |||||           | || ||||   ||||||||| | ||||||||
seq2  ATATAAACATATTGACACATGTTAAAACTAACTTTTAAATA-ACATTTAA  249

seq1  AAAAAAAAAAGA  51
      ||||||||||||
seq2  AAAAAAAAAAGA  261