BAC Information

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BAC

Clone NameB6Ng01-221M21
Chromosome11 (Build37)13 (Build37)
Map Location 103,245,578 - 103,246,69933,730,407 - 33,730,573
singlet/doubletsingletsinglet
Overlap genePlekhm1
Upstream geneRap2ip, Slc25a39, Grn, BC025575, Itga2b, Mdk-ps1, LOC100040792, Fzd2, 2810433D01Rik, Psmb5-ps, Gm1564, LOC100042456, Ccdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik
Downstream geneLrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, Nsf, EG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221M21.bB6Ng01-221M21.g
ACCGA036994GA036995
length1,130510
definitionB6Ng01-221M21.b B6Ng01-221M21.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(103,245,578 - 103,246,699)(33,730,407 - 33,730,573)
sequence
gaattcagtcaagatggtcaaggccacacttgggagtcgaggtgagacac
aggcagccgcctcttaaaaagcatccttctctctgcagcctaaggcggaa
gctgcaaaccctccaagcttcaggatatcttcactactgcccagtaagac
tctccaaggcctcataaaatgcaccgtccagaagtaaatctggaaccacg
ttcagaatggtaaaaccagagactctggcccagttatacaagttcatgat
tcttatagtcattactctcaatgcactgagctcgatcagatgtccacata
gaaaaatataaactggatccagagaggcagtccagtgctctctctcaggc
aagctttgtgacctgaggttgatccccagcaatcacatggtgggaagaga
tactcaatccccaggagatgtcctctgacctccatttgtgtgctgtggca
tactcacgtggccacacatacacctgcacatctgcatagcactcaatcaa
taaacataaataaataaactcaatcaagtgattgctacctcacattaagc
ccagggaagtaaaaacaagagaatgagaaatgtaaagtcattttagactg
tgtacatggccagtctgagaccagcacatgtcttaaaaatcaggaaaaaa
gaaacaaaaaagaaacaaaaaaccaccaaattcaacttaagaatgggctg
gagaaacggcccagtggttaagagcactggctgcttttcagaggaccctg
gtttgattctcagaacccatatgggaactcacaatcatctgaaaaatcaa
actccaatgtcagggtatccagtgccctcttctggcactgtggctaccag
aaacgcttgtggtgcgcatacatacatgcatgcaaaatacccatacacat
aaaataaaaatttaaggcaaataaaatgtgatgatgtctcacaaaagata
aaaacggccttatacagccaaatgaaaaggtagtcccttactcaccagaa
gcacacagaataaaaaaccaccaccaatcttagcacttcttcatccacca
ggatggcctataataacagaactcatttgaaaccttagttaattacactg
tgtaagaatgctggcaaaatacattggtgg
agcaggtcaagagagccatcattcagtggaactctggaagaaaagaaatc
attgagacatcaaaacctccctctctctctctctctctctctctccctct
ctctctctctctctctcctccctctgtgtgtgtgtgtgtgtgtgtgtgtg
cgcgtgtgtgtgtgtgaacacacatttaaaaacaatacaatattattgtt
cattaccagcgagaatgtggatgtgtgggcggggaatctaggaccctgga
ggagggagcggatacagtaaccactgagactttcttctcactgccttcct
tcccttgttttattggggggggcttctgtttgtatctatgtctaccaacc
catggatggggcggcgcacgtagggtccgcctctcaattgatccctaatt
gatataattataacttttggagcttgtggatgcattccatgagagaaaga
gatggtcctcagcctccctgtgtgtgttgattgacaataaaacattcatt
tatttatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_103245578_103246699
seq2: B6Ng01-221M21.b_45_1174

seq1  GAATTCAGTCAAGATGGTCAAGGCCACACTTGGGAGTCGAGGTGAGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAAGATGGTCAAGGCCACACTTGGGAGTCGAGGTGAGACAC  50

seq1  AGGCAGCCGCCTCTTAAAAAGCATCCTTCTCTCTGCAGCCTAAGGCGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCGCCTCTTAAAAAGCATCCTTCTCTCTGCAGCCTAAGGCGGAA  100

seq1  GCTGCAAACCCTCCAAGCTTCAGGATATCTTCACTACTGCCCAGTAAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAACCCTCCAAGCTTCAGGATATCTTCACTACTGCCCAGTAAGAC  150

seq1  TCTCCAAGGCCTCATAAAATGCACCGTCCAGAAGTAAATCTGGAACCACG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGGCCTCATAAAATGCACCGTCCAGAAGTAAATCTGGAACCACG  200

seq1  TTCAGAATGGTAAAACCAGAGACTCTGGCCCAGTTATACAAGTTCATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATGGTAAAACCAGAGACTCTGGCCCAGTTATACAAGTTCATGAT  250

seq1  TCTTATAGTCATTACTCTCAATGCACTGAGCTCGATCAGATGTCCACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAGTCATTACTCTCAATGCACTGAGCTCGATCAGATGTCCACATA  300

seq1  GAAAAATATAAACTGGATCCAGAGAGGCAGTCCAGTGCTCTCTCTCAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATATAAACTGGATCCAGAGAGGCAGTCCAGTGCTCTCTCTCAGGC  350

seq1  AAGCTTTGTGACCTGAGGTTGATCCCCAGCAATCACATGGTGGGAAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGTGACCTGAGGTTGATCCCCAGCAATCACATGGTGGGAAGAGA  400

seq1  TACTCAATCCCCAGGAGATGTCCTCTGACCTCCATTTGTGTGCTGTGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAATCCCCAGGAGATGTCCTCTGACCTCCATTTGTGTGCTGTGGCA  450

seq1  TACTCACGTGGCCACACATACACCTGCACATCTGCATAGCACTCAATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACGTGGCCACACATACACCTGCACATCTGCATAGCACTCAATCAA  500

seq1  TAAACATAAATAAATAAACTCAATCAAGTGATTGCTACCTCACATTAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATAAATAAATAAACTCAATCAAGTGATTGCTACCTCACATTAAGC  550

seq1  CCAGGGAAGTAAAAACAAGAGAATGAGAAATGTAAAGTCATTTTAGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAAGTAAAAACAAGAGAATGAGAAATGTAAAGTCATTTTAGACTG  600

seq1  TGTACATGGCCAGTCTGAGACCAGCACATGTCTTAAAAATCAGGAAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACATGGCCAGTCTGAGACCAGCACATGTCTTAAAAATCAGGAAAAAA  650

seq1  GAAACAAAAAAGAAACAAAAAACCACCAAATTCAACTTAAGAATGGGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAAAAGAAACAAAAAACCACCAAATTCAACTTAAGAATGGGCTG  700

seq1  GAGAAACGGCCCAGTGGTTAAGAGCACTGGCTGCTTTTCAGAGGACCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACGGCCCAGTGGTTAAGAGCACTGGCTGCTTTTCAGAGGACCCTG  750

seq1  GTTTGATTCTCAGAACCCATATGGGAACTCACAATCATCTGAAAAATCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTCTCAGAACCCATATGGGAACTCACAATCATCTGAAAAATCAA  800

seq1  ACTCCAATGTCAGGGTATCCAGTGCCCTCTTCTGGCACTGTGGCTACCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAATGTCAGGGTATCCAGTGCCCTCTTCTGGCACTGTGGCTACCAG  850

seq1  AAACGCTTGTGGTGCGCATACATACATGCATGCAAAATACCCATACACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCTTGTGGTGCGCATACATACATGCATGCAAAATACCCATACACAT  900

seq1  AAAATAAAAATTAAAGCAAAATAAAATGTGATGATGTCTCACAAAAGAT-  949
      |||||||||||| |||  ||||||||||||||||||||||||||||||| 
seq2  AAAATAAAAATTTAAGGCAAATAAAATGTGATGATGTCTCACAAAAGATA  950

seq1  AAAACGGCCTTATACAGCCAAATGAAAAGGTAGT-CCTTACTCACCAGAA  998
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAACGGCCTTATACAGCCAAATGAAAAGGTAGTCCCTTACTCACCAGAA  1000

seq1  GCACACAGAATAAAAA--CACCA-CAATC-TAGCACTTC-TCATCCACCA  1043
      ||||||||||||||||  ||||| ||||| ||||||||| ||||||||||
seq2  GCACACAGAATAAAAAACCACCACCAATCTTAGCACTTCTTCATCCACCA  1050

seq1  GGATGG-CTATAATAACAG-ACTCATTTGAAAC--TAAGTAATTACAACT  1089
      |||||| |||||||||||| |||||||||||||  ||  ||||||| |||
seq2  GGATGGCCTATAATAACAGAACTCATTTGAAACCTTAGTTAATTAC-ACT  1099

seq1  GTTGGTAAGGATGCTGGAAAAATACATTGGTGG  1122
      ||  ||||| ||||||| |||||||||||||||
seq2  GT--GTAAGAATGCTGGCAAAATACATTGGTGG  1130

seq1: chr13_33730407_33730573
seq2: B6Ng01-221M21.g_149_582

seq1  --CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT-CTCTCTCTG  47
        ||||||||||||||||| |||||||||||||||||||| ||| |||||
seq2  CTCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCCTCCCTCTG  50

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGTG----------  87
      |||||||||||||||||||||||| |  ||||||||||||          
seq2  TGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGTGTGTGTGAACACACATT  100

seq1  ---------------------------------------TGTGTGTGTGT  98
                                             ||||  |||||
seq2  TAAAAACAATACAATATTATTGTTCATTACCAGCGAGAATGTGGATGTGT  150

seq1  GTGTGTG---TGTATG--TGTGTATGTGTGTGTG--------------TC  129
      | | | |   | || |    || | | | | | |              | 
seq2  GGGCGGGGAATCTAGGACCCTGGAGGAGGGAGCGGATACAGTAACCACTG  200

seq1  TGTCTTTCTGTCCTTTACTTCATTCATTTATTTATTTT------------  167
       | |||||| ||  | ||| | ||| ||   || ||||            
seq2  AGACTTTCT-TC--TCACTGCCTTCCTTCCCTTGTTTTATTGGGGGGGGC  247

seq1  --------------------------------------------------  167
                                                        
seq2  TTCTGTTTGTATCTATGTCTACCAACCCATGGATGGGGCGGCGCACGTAG  297

seq1  --------------------------------------------------  167
                                                        
seq2  GGTCCGCCTCTCAATTGATCCCTAATTGATATAATTATAACTTTTGGAGC  347

seq1  --------------------------------------------------  167
                                                        
seq2  TTGTGGATGCATTCCATGAGAGAAAGAGATGGTCCTCAGCCTCCCTGTGT  397

seq1  -------------------------------------  167
                                           
seq2  GTGTTGATTGACAATAAAACATTCATTTATTTATTTT  434