BAC Information

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BAC

Clone NameB6Ng01-221N11
Chromosome13 (Build37)
Map Location 24,098,144 - 24,099,150
singlet/doubletsinglet
Overlap genenone
Upstream geneV1rh6, V1rh5, V1ri2, V1ri10, V1rh14, LOC100040639, V1ri5, V1rh13, V1rh12, V1rh16, OTTMUSG00000000541, Zfp322a, Abt1, Btn1a1, Btn2a2, Hist1h4h, Hist1h2af, Hist1h3g, Hist1h2bh, Hist1h3f, Hist1h4f, Hist1h1d, Hist1h3e, Hist1h2ae, Hist1h2bg, Hist1h2bf, Hist1h2ad, Hist1h3d, Hist1h4d, Hist1h2be, Hist1h1e, Hist1h2ac, Hist1h2bc, Hist1h1t, Hist1h4c, Hfe, Hist1h1c, Hist1h3c, Hist1h2bb, Hist1h2ab, Hist1h3b, Hist1h4b, Hist1h4a, Hist1h3a, Hist1h1a, Trim38, Slc17a2, Slc17a3, Slc17a1, Slc17a4, Snrp1c-ps2, Hist1h2ba, Hist1h2aa, Scgn
Downstream geneLrrc16, LOC100042017, Cmah, 5830431A10Rik, 6330500D04Rik, LOC666145, Gmnn, LOC100040800, BC005537, Them2, Ttrap, D130043K22Rik, Aldh5a1, Gpld1, Mrs2l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221N11.bB6Ng01-221N11.g
ACCGA037020GA037021
length1,025933
definitionB6Ng01-221N11.b B6Ng01-221N11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatgcccatggatatcaaaatccacaggtttacataaggccttt
acataaaatggagtcatatttgtatgtaacttgtacacattgttattcag
atagtctgacaatgtaccccaagctagcctcaaactcaccgtgtagccca
agttgtccttgaattcaggatccttctacctctgcttgctaactgccagg
attacaggcatgtttcaccaattccagcaaacactttaaagttttcctaa
tatcttcattcctcaaatgctgaatgagtggaaacagaaggttgactgtc
tatgctacaaaccatgttatttgtatcttggacagtgtaaatcacagcta
agattgtaatcagcacaggtattacaaacattattacagtcatccctatt
tcacaattacagtacttagagactacactctgctatactgttaatgaatc
agtaaagaattgcatccatttctgaattagtatgtgtatgtgtttgtatt
tgtgtttgtgtatgtataatgtgcacattgtatgctattgataaactgta
ctctaggccccagctttaaaacattttaaattacatttcagcatagctga
ttgtctctgtaagactcctctattttattcatgttgaatcttaattctaa
gcagtttcctaagcttcacatgacaacccaaagaatgatggacaaatatg
ttaaggccaactcaaaaccctcttacaggtccagtaaggacagaaacact
ttatgtttctctcagatgtttctggagataagttggaaaggagtgtggtt
tccttcttctgccctccacatatcagatattcccctgcaaatcctttctc
actggggttgcaaaggtatgtcaaattttatgttcaacagctatttagga
ggagacattggtcttcaaaaggttgaaacaagggacacagaccttcacat
tattggccattttcatccaaatggctcctcagagggtaaggtgagccgac
tcttgtgttcctgcttacctctgga
gaattctcagttggtcaataacctgagactagataggtcatagatctata
agaaaggcaaatactactattcggtgaaaggaacatggcaataaaatgac
tcttaatggccttctgctgtacttacagtgtcttgctcagccatcatcag
agaagcttcttcccgtagtaggtgagaatacagacagacacccacaactg
gacaatgggctgaaagcgagagaccttggagccctcagtctaaatggaat
gtctccatcaaattcttcccctcagggttcagggaactttggaaaagtag
ggggaaagattgtaagagccgctggggatggaagaccccccccccaagga
gacaaggccttttagatacaacagagctgatgtccatgtgaactcataac
ctttgtgaaagcatacccagtatgcacttgtcttagccagagtgggcact
agcactgagaagaacatggacacaaacccccatccctacccagaaggtga
ctccaattgaactttgtttgctttaatggagtttgtactggttatacaaa
ttacacgtaaaggcgggccccatgcctagcagtagatgggcaacacaaaa
atcaactcaatgatattcttgaaggttgcttatgttttttgttttgatct
gttgactcataatgcttcatttgctctttttttttttacccttagagata
ttttgcttaatacatttatggtttttatttttatatttttagtaaaaatt
tccttgtgtttgcatgaatgtgtatcattacatctctgtgtgtttccttg
tactctctctttgactcttttccccctgttttgggtgcttggtttggcct
attcaagtttgttgaaaaccacttttagaagtggccaaacccttggttgc
tttttatgaggaaagaagggttgaacacacgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_24098144_24099150
seq2: B6Ng01-221N11.b_47_1071 (reverse)

seq1  TCCAGAGGT-AGCAGGCACAC-AGAGTCGGCTCACCCTACCTCCTGA-GA  47
      ||||||||| |||||| |||| |||||||||||||| ||||  |||| ||
seq2  TCCAGAGGTAAGCAGGAACACAAGAGTCGGCTCACCTTACCCTCTGAGGA  50

seq1  GCATTTGGGATGAATATGG-CAATATTCTGAA-GTCTGTGTCCC-TGTTT  94
      ||  || ||||||| |||| ||||| | |||| ||||||||||| |||||
seq2  GCCATTTGGATGAAAATGGCCAATAATGTGAAGGTCTGTGTCCCTTGTTT  100

seq1  CAAC--TTTGAAAACCACTGTCTCCTCCTAAATAGCTGTTG-ACAT-AAA  140
      ||||  |||||| |||| ||||||||||||||||||||||| |||| |||
seq2  CAACCTTTTGAAGACCAATGTCTCCTCCTAAATAGCTGTTGAACATAAAA  150

seq1  TTTGACATACCTTTGCAA-CCCAGTGAGAAA-GATTTGCAGGGGAATATC  188
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  TTTGACATACCTTTGCAACCCCAGTGAGAAAGGATTTGCAGGGGAATATC  200

seq1  TGATATGTGGAAGGCAGAAGAAGG-AACCACACTCCTTTCCAACTTATCT  237
      ||||||||||| |||||||||||| |||||||||||||||||||||||||
seq2  TGATATGTGGAGGGCAGAAGAAGGAAACCACACTCCTTTCCAACTTATCT  250

seq1  CCAGAAACATCTGAGAG-AACAT-AAGTGTTTCTGTCC-TACTGGACCTG  284
      ||||||||||||||||| ||||| |||||||||||||| |||||||||||
seq2  CCAGAAACATCTGAGAGAAACATAAAGTGTTTCTGTCCTTACTGGACCTG  300

seq1  T-AGAGGGTTTTGAGTTGGCCTTAACATATTTGTCCATCATTCTTTGGGT  333
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGGTTTTGAGTTGGCCTTAACATATTTGTCCATCATTCTTTGGGT  350

seq1  TGTCATGTGAAGCTTAGG-AACTGCTTAGAATTAAGATTCAACATGAATA  382
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGTCATGTGAAGCTTAGGAAACTGCTTAGAATTAAGATTCAACATGAATA  400

seq1  AAATAGAGGAGTCTTACAGAGACAATCAGCTATGCTGAAATGTAATTTAA  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGGAGTCTTACAGAGACAATCAGCTATGCTGAAATGTAATTTAA  450

seq1  AATGTTTTAAAGCTGGGGCCTAGAGTACAGTTTATCAATAGCATACAATG  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTAAAGCTGGGGCCTAGAGTACAGTTTATCAATAGCATACAATG  500

seq1  TGCACATTATACATACACAAACACAAATACAAACACATACACATACTAAT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTATACATACACAAACACAAATACAAACACATACACATACTAAT  550

seq1  TCAGAAATGGATGCAATTCTTTACTGATTCATTAACAGTATAGCAGAGTG  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATGGATGCAATTCTTTACTGATTCATTAACAGTATAGCAGAGTG  600

seq1  TAGTCTCTAAGTACTGTAATTGTGAAATAGGGATGACTGTAATAATGTTT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCTAAGTACTGTAATTGTGAAATAGGGATGACTGTAATAATGTTT  650

seq1  GTAATACCTGTGCTGATTACAATCTTAGCTGTGATTTACACTGTCCAAGA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATACCTGTGCTGATTACAATCTTAGCTGTGATTTACACTGTCCAAGA  700

seq1  TACAAATAACATGGTTTGTAGCATAGACAGTCAACCTTCTGTTTCCACTC  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAACATGGTTTGTAGCATAGACAGTCAACCTTCTGTTTCCACTC  750

seq1  ATTCAGCATTTGAGGAATGAAGATATTAGGAAAACTTTAAAGTGTTTGCT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCATTTGAGGAATGAAGATATTAGGAAAACTTTAAAGTGTTTGCT  800

seq1  GGAATTGGTGAAACATGCCTGTAATCCTGGCAGTTAGCAAGCAGAGGTAG  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGGTGAAACATGCCTGTAATCCTGGCAGTTAGCAAGCAGAGGTAG  850

seq1  AAGGATCCTGAATTCAAGGACAACTTGGGCTACACGGTGAGTTTGAGGCT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATCCTGAATTCAAGGACAACTTGGGCTACACGGTGAGTTTGAGGCT  900

seq1  AGCTTGGGGTACATTGTCAGACTATCTGAATAACAATGTGTACAAGTTAC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGGGTACATTGTCAGACTATCTGAATAACAATGTGTACAAGTTAC  950

seq1  ATACAAATATGACTCCATTTTATGTAAAGGCCTTATGTAAACCTGTGGAT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATATGACTCCATTTTATGTAAAGGCCTTATGTAAACCTGTGGAT  1000

seq1  TTTGATATCCATGGGCATGGAATTC  1007
      |||||||||||||||||||||||||
seq2  TTTGATATCCATGGGCATGGAATTC  1025