BAC Information

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BAC

Clone NameB6Ng01-221N13
Chromosome13 (Build37)
Map Location 18,232,631 - 18,384,423
singlet/doubletdoublet
Overlap genePou6f2
Upstream gene5033411D12Rik, 2810021B07Rik, Cdc2l5, Rala, LOC434585, LOC382732, 1600012F09Rik, Vdac3-ps1, LOC625310, 4930448F12Rik
Downstream geneVps41, Amph, LOC624044, Tcrg-V4, LOC624071
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221N13.bB6Ng01-221N13.g
ACCGA037024GA037025
length1,219956
definitionB6Ng01-221N13.b B6Ng01-221N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,383,219 - 18,384,423)(18,232,631 - 18,233,579)
sequence
gaattcagggttcagtatatagcaggggatcattagagctctcttcatcg
gtgattattagctgaacctgcattaacccattatcagggagagggccagt
tagaaaactggagtcaatgccctgcaaagagtagaaggaacagggcttac
tcagagcagcctccacagtttgcctaaataacagaaaaatgggacacatt
ttaaacagcgattaaagatctagattagcttcaaattgtctctccttttt
aatcgttttaattctttaatctttcagctgcaaaaggtgctttaaatagt
gagaaagtgctagcaattcactagactatttatacccagaggcaataaga
tgtaatgttataaccctcaactttgtattcagatagacagacttgagttc
aaagctcagttctgcctctaactgtatgataacaggcaaatcatttcgtc
ctcctgaacttttatgccctcactataataataataaaacagtgatgatg
atgatgataaacatggaacatagtgactcacaagtggcaggcaaatattg
ggttgcaccttctttactatttagtgacttaacaaccatgatacatatct
gcacatgcccataatcccagcacttgggaagccagtgtggtgaccaagac
cagcatgtgaactcttaaaggacatgctcgaaccatatacacacacagta
gcagatatatagctacatggctcagtgctgtataatcccatcattgaggc
agaggttataaattctataccctacacttcctgcaatggctgtggtgagc
aaatcaacaaactttcaaccagttctctaattaccaaaatgatgaaaaca
gaagtgagtcggcgtatctgtgttcatgctgtcagtatcagatgtttcaa
agctgtggttcttggtacaagacaatgttctatcagtgttggtgtttttg
cttttcttaagaagaatgaaaaagtctcttcatgacacataaagtaccaa
ctagtggtgaaagaaaactcttctgagtccagctttgtgaataaatggga
ttactgggcttgcttactgagtatgtgtaacccaaaagcaactccaggaa
caggtaattcactagcattgcagaacggattcaactagaagctgcaattg
ctgggaaccacactcttcagtaagcatctatcttccgtaatagtgtgtaa
gacactctcccccactatg
gaattctcacactactattgcctccatagagggaagccaggttagttagg
ggagacctggggtgtggtggttcatcctcttggtgtggaagagctggtct
ctggacatgtcaagtttggtcctggggcttgtgtcaatgattacaacaac
acaaagaagaactaatttacttttaaaacgtttttgaattttgtctcatg
tctgtttacttattactcctttaaggcctctcaaggaaatgggctctgag
aggttgaggaaggagagaggagaaaagttccactagaaaacttggaggga
tctctcccttcttcctgggttgcccttctaaaaagatgttccaggagctc
agggccctaaggaatttgaaggttagccttggcagtagccaccctagtta
attataagcaatatttggttcacactaaaaggcatgacaaggttttataa
aagtgggacagcctggaagtcaaatcagagcaggcagtaggagctgtgca
ctgagtgaattagcctctgactgtcatatctaagagccttagacacttca
gcttcaatttgcgtctgcctctcctccctccgtgtgttcattctccatca
tttttgaagatacaattttcacataataaaacacctgtgaaaccatcatt
ataatcaatacaggaagctttattgttttataaagtttccgcttgcaagc
aatgtctaccctcaattctccaccttgactaccattgctctgctttctct
catgatagagacactttggcataattctagaaatggtgccatatgacaca
cccttcttgtagcccccttactttgcttggctagactgttcacagatcat
tccaatcttattgggtattccagtagttcattctctttgataagcaaagt
agtagatccactgccatgatgttgcataccattccacaattatacacatt
atactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_18383219_18384423
seq2: B6Ng01-221N13.b_51_1269 (reverse)

seq1  CATAGTCCTATGGGGA-AGTG-CTTACACA----TACAGGAAG-TAGATG  43
      ||||||     ||||| |||| ||||||||    ||| ||||| ||||| 
seq2  CATAGT----GGGGGAGAGTGTCTTACACACTATTAC-GGAAGATAGAT-  44

seq1  GCTAACTG-AGAGTG-GGTT-CCAGCAA-TGCAGC-TCTAG-TGAAT-CG  86
      ||| |||| |||||| |||| ||||||| |||||| ||||| ||||| ||
seq2  GCTTACTGAAGAGTGTGGTTCCCAGCAATTGCAGCTTCTAGTTGAATCCG  94

seq1  TTCTGC-ATGCTAGTGAATTACCTG-TCCTGGAGTTGCTTTTGGGTCACA  134
      |||||| |||||||||||||||||| |||||||||||||||||||| |||
seq2  TTCTGCAATGCTAGTGAATTACCTGTTCCTGGAGTTGCTTTTGGGTTACA  144

seq1  CATACTCAGTAAGCAAGCCCAGTAATCCCATTTATTCACAAAGCTGGACT  184
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCAGTAAGCAAGCCCAGTAATCCCATTTATTCACAAAGCTGGACT  194

seq1  CAGAAGAG-TTTCTTTCACCACTAGTTGGTACTTTATGTGTCATGAAGAG  233
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGAGTTTTCTTTCACCACTAGTTGGTACTTTATGTGTCATGAAGAG  244

seq1  ACTTTTTCATTC-TCTTAAGAAAAGC-AAAACACCAACACTGATAGAACA  281
      |||||||||||| ||||||||||||| |||||||||||||||||||||||
seq2  ACTTTTTCATTCTTCTTAAGAAAAGCAAAAACACCAACACTGATAGAACA  294

seq1  TTGTCTTGTACCAAGAACCACAGC-TTGAAACATCTGATACTGACAGCAT  330
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGTCTTGTACCAAGAACCACAGCTTTGAAACATCTGATACTGACAGCAT  344

seq1  GAACACAGATACGCCGACTCACTTCTGTTTTCATCATTTTGGTAATTAGA  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACAGATACGCCGACTCACTTCTGTTTTCATCATTTTGGTAATTAGA  394

seq1  GAACTGGTTGAAAGTTTGTTGATTTGCTCACCACAGCCATTGCAGGAAGT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGTTGAAAGTTTGTTGATTTGCTCACCACAGCCATTGCAGGAAGT  444

seq1  GTAGGGTATAGAATTTATAACCTCTGCCTCAATGATGGGATTATACAGCA  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGTATAGAATTTATAACCTCTGCCTCAATGATGGGATTATACAGCA  494

seq1  CTGAGCCATGTAGCTATATATCTGCTACTGTGTGTGTATATGGTTCGAGC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCATGTAGCTATATATCTGCTACTGTGTGTGTATATGGTTCGAGC  544

seq1  ATGTCCTTTAAGAGTTCACATGCTGGTCTTGGTCACCACACTGGCTTCCC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTTAAGAGTTCACATGCTGGTCTTGGTCACCACACTGGCTTCCC  594

seq1  AAGTGCTGGGATTATGGGCATGTGCAGATATGTATCATGGTTGTTAAGTC  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGATTATGGGCATGTGCAGATATGTATCATGGTTGTTAAGTC  644

seq1  ACTAAATAGTAAAGAAGGTGCAACCCAATATTTGCCTGCCACTTGTGAGT  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATAGTAAAGAAGGTGCAACCCAATATTTGCCTGCCACTTGTGAGT  694

seq1  CACTATGTTCCATGTTTATCATCATCATCATCACTGTTTTATTATTATTA  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGTTCCATGTTTATCATCATCATCATCACTGTTTTATTATTATTA  744

seq1  TAGTGAGGGCATAAAAGTTCAGGAGGACGAAATGATTTGCCTGTTATCAT  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGGGCATAAAAGTTCAGGAGGACGAAATGATTTGCCTGTTATCAT  794

seq1  ACAGTTAGAGGCAGAACTGAGCTTTGAACTCAAGTCTGTCTATCTGAATA  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTAGAGGCAGAACTGAGCTTTGAACTCAAGTCTGTCTATCTGAATA  844

seq1  CAAAGTTGAGGGTTATAACATTACATCTTATTGCCTCTGGGTATAAATAG  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTGAGGGTTATAACATTACATCTTATTGCCTCTGGGTATAAATAG  894

seq1  TCTAGTGAATTGCTAGCACTTTCTCACTATTTAAAGCACCTTTTGCAGCT  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGAATTGCTAGCACTTTCTCACTATTTAAAGCACCTTTTGCAGCT  944

seq1  GAAAGATTAAAGAATTAAAACGATTAAAAAGGAGAGACAATTTGAAGCTA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATTAAAGAATTAAAACGATTAAAAAGGAGAGACAATTTGAAGCTA  994

seq1  ATCTAGATCTTTAATCGCTGTTTAAAATGTGTCCCATTTTTCTGTTATTT  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGATCTTTAATCGCTGTTTAAAATGTGTCCCATTTTTCTGTTATTT  1044

seq1  AGGCAAACTGTGGAGGCTGCTCTGAGTAAGCCCTGTTCCTTCTACTCTTT  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAACTGTGGAGGCTGCTCTGAGTAAGCCCTGTTCCTTCTACTCTTT  1094

seq1  GCAGGGCATTGACTCCAGTTTTCTAACTGGCCCTCTCCCTGATAATGGGT  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCATTGACTCCAGTTTTCTAACTGGCCCTCTCCCTGATAATGGGT  1144

seq1  TAATGCAGGTTCAGCTAATAATCACCGATGAAGAGAGCTCTAATGATCCC  1180
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAGGTTCAGCTAATAATCACCGATGAAGAGAGCTCTAATGATCCC  1194

seq1  CTGCTATATACTGAACCCTGAATTC  1205
      |||||||||||||||||||||||||
seq2  CTGCTATATACTGAACCCTGAATTC  1219

seq1: chr13_18232631_18233579
seq2: B6Ng01-221N13.g_66_1021

seq1  GAATTCTCACACTACTATTGCCTCCATAGAGGGAAGCCAGGTTAGTTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACACTACTATTGCCTCCATAGAGGGAAGCCAGGTTAGTTAGG  50

seq1  GGAGACCTGGGGTGTGGTGGTTCATCCTCTTGGTGTGGAAGAGCTGGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCTGGGGTGTGGTGGTTCATCCTCTTGGTGTGGAAGAGCTGGTCT  100

seq1  CTGGACATGTCAAGTTTGGTCCTGGGGCTTGTGTCAATGATTACAACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACATGTCAAGTTTGGTCCTGGGGCTTGTGTCAATGATTACAACAAC  150

seq1  ACAAAGAAGAACTAATTTACTTTTAAAACGTTTTTGAATTTTGTCTCATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAGAACTAATTTACTTTTAAAACGTTTTTGAATTTTGTCTCATG  200

seq1  TCTGTTTACTTATTACTCCTTTAAGGCCTCTCAAGGAAATGGGCTCTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTACTTATTACTCCTTTAAGGCCTCTCAAGGAAATGGGCTCTGAG  250

seq1  AGGTTGAGGAAGGAGAGAGGAGAAAAGTTCCACTAGAAAACTTGGAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGAGGAAGGAGAGAGGAGAAAAGTTCCACTAGAAAACTTGGAGGGA  300

seq1  TCTCTCCCTTCTTCCTGGGTTGCCCTTCTAAAAAGATGTTCCAGGAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTTCTTCCTGGGTTGCCCTTCTAAAAAGATGTTCCAGGAGCTC  350

seq1  AGGGCCCTAAGGAATTTGAAGGTTAGCCTTGGCAGTAGCCACCCTAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCCTAAGGAATTTGAAGGTTAGCCTTGGCAGTAGCCACCCTAGTTA  400

seq1  ATTATAAGCAATATTTGGTTCACACTAAAAGGCATGACAAGGTTTTATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGCAATATTTGGTTCACACTAAAAGGCATGACAAGGTTTTATAA  450

seq1  AAGTGGGACAGCCTGGAAGTCAAATCAGAGCAGGCAGTAGGAGCTGTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGACAGCCTGGAAGTCAAATCAGAGCAGGCAGTAGGAGCTGTGCA  500

seq1  CTGAGTGAATTAGCCTCTGACTGTCATATCTAAGAGCCTTAGACACTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGAATTAGCCTCTGACTGTCATATCTAAGAGCCTTAGACACTTCA  550

seq1  GCTTCAATTTGCGTCTGCCTCTCCTCCCTCCGTGTGTTCATTCTCCATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAATTTGCGTCTGCCTCTCCTCCCTCCGTGTGTTCATTCTCCATCA  600

seq1  TTTTTGAAGATACAATTTTCACATAATAAAACACCTGTGAAACCATCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGAAGATACAATTTTCACATAATAAAACACCTGTGAAACCATCATT  650

seq1  ATAATCAATACAGGAAGCTTTATTGTTTTATAAAGTTTCCGCTTGCAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAATACAGGAAGCTTTATTGTTTTATAAAGTTTCCGCTTGCAAGC  700

seq1  AATGTCTACCCTCAATTCTCCACCTTGACTACCATTGCTCTGCTTTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTACCCTCAATTCTCCACCTTGACTACCATTGCTCTGCTTTCTCT  750

seq1  CATGATAGAGACAC-TTGGCATAATTCTAGAAATGGTGCCATATGACACA  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATGATAGAGACACTTTGGCATAATTCTAGAAATGGTGCCATATGACACA  800

seq1  CCCTTCTTGTAGCCCCCTTACTTTGCTTGGC-AGACTGTTCACAGATTCA  848
      ||||||||||||||||||||||||||||||| |||||||||||||||   
seq2  CCCTTCTTGTAGCCCCCTTACTTTGCTTGGCTAGACTGTTCACAGATCAT  850

seq1  TCCAATC-TGTTGGGTATTCCAGTAGTTCATTCTCTTTGAT-AGCAAAGT  896
      ||||||| | ||||||||||||||||||||||||||||||| ||||||||
seq2  TCCAATCTTATTGGGTATTCCAGTAGTTCATTCTCTTTGATAAGCAAAGT  900

seq1  AGTAG-TTCACTGCCATGATG-TGCATACCATTCCACAA-TATACACATT  943
      ||||| | ||||||||||||| ||||||||||||||||| ||||||||||
seq2  AGTAGATCCACTGCCATGATGTTGCATACCATTCCACAATTATACACATT  950

seq1  ATACTT  949
      ||||||
seq2  ATACTT  956