BAC Information

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BAC

Clone NameB6Ng01-222G19
Chromosome13 (Build37)
Map Location 27,362,259 - 27,482,111
singlet/doubletdoublet
Overlap genePrl3a1, Prl6a1, Prl8a2, Prl2b1
Upstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1
Downstream genePrl8a6, Prl8a8, Prl8a9, Prl8a1, Prl7b1, Prl7a1, Prl7a2, RP23-135A24.2-001, Prl7d1, Prl7c1, Prl2a1, OTTMUSG00000000651, LOC666321, LOC195243, LOC100041036, Prl4a1, Prl5a1, LOC100042388, LOC100042393
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222G19.bB6Ng01-222G19.g
ACCGA037443GA037444
length1,0941,105
definitionB6Ng01-222G19.b B6Ng01-222G19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,362,259 - 27,363,345)(27,480,998 - 27,482,111)
sequence
gaattccataaaatctcaaagatttgtaaaaattacaatggctttaaata
attgcttaaataaatgttttgtaatatttgttatatttttgtaaaaagtt
actatctttaaacttgaatttatgacattaagtcttaaaagtgaggctag
agaagaactctgacgtgctggtcttgtacggagggcctgttttctatgat
tagcctgcacttagcagatattgagtataacactgtggaggaaaaagaaa
tgaactattctgacagtgtgtataaaagaaacatcaaaaagctgtttagt
tagcaccaagggttgaaactggctgtctatagatttctattgacaaattt
tcaatgacacagggagagatggtttagaattgaaatatgttctcttccta
gtggagacccagggtctgatcagagtcactcaatgtgaggaaaacagaga
tgactgcaacacaaaattgggagtcttgagaatatatctagagatttgtt
aggaatataaatcaccattgtctttacactaactactgtttatttcagtc
tacattcattcacaatctttcaacttcataatatccctgttataaagagc
gaatcacacaaatatgattccttcaaatgaggtcacaagagttaaactgt
ctgggataccctacctgttctattacagaatttgttcctgtatagctgta
gtggggaataaaatttttccactgtgaatatgcaggtaatggttacattg
ccataacacatagtgtgagagatgggtgactttctgtatttttggtattt
acaaattcaatgattatttgtagtaagtaatacacatcttcagttgataa
tatagagacattaaataatactcttaattgttcacttattatttcttaaa
tgttttcttgaaaacattcctagataattttattttagttaaaatataat
tatatcattgcccctttcctttccttcctttaccctccccatgtttgttc
cacttaattatcccccaaaacccaataatggcttttaatgttatgatcat
ggtgtgaataaatataatatatatacaatatatattatatatat
gaattctttgacttgaatgaatgcatccaaactgtcattcctgtagagaa
atgtatacaagcattgcagatgtgggtaatatagaactttaacaactttg
ttcaagtaaaataaaggtgtaaaatttcccactactgctaacttgcttct
attttcttagtaatgttttaagaaatatgaattagtaacaacagtaaatt
tgattttatgaaaataaaaaccaaatagtgagcattctttctttcttata
ggactatgaaaatccttcagttgattaattaatgaagggtacatatacat
aatttaatatatatgtacattacacataaaataaacttaagacttcagga
gtattttcaaagatgtattagtgatatgaattatttgacagcatttttat
tttcaaataaaattagtgcttatttgtattttacacagctttttggcata
tttagatattttaaataattgggtgtagatgtttgccattcattcctcct
ctcagtttcctaagtttgtgttggacactaccactaatattaaaaagagt
tctattgaaatatagattcctgagaataacattttataacatcttttgtg
ccagacttgtgtgtataaggtaagtagaattttaatttgatgattgcatg
acatgtcaccctgttgtaaactattgatatgttaaagttctgttctggtt
ttcttcatgtaaagcatgtatgaaaagaaagttgatgaagccaacacttg
tcattggaaaaatcatttaaaggcttgtgctatatagaacagagaaagta
gataaaatcacatttctgggaccagtgaccagtcaccatagacaatatct
gtttttttacatggatttacaactcttgccaacacagatcatcagatgag
gggcaaaatcctcagtgttggtgccttgcattctgaaaatgctaataatg
gtggtataaaataattacagaagtgcacatatggcttataatattcttta
tgtttcattaataactatgttcccagccaaatcattggcttatgcagcag
caaatgagaaaatagtctaaaacatttgcaaagctatattcaaggtaaaa
aagac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_27362259_27363345
seq2: B6Ng01-222G19.b_44_1137

seq1  GAATTCCATAAAATCTCAAAGATTTGTAAAAATTACAATGGCTTTAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAAAATCTCAAAGATTTGTAAAAATTACAATGGCTTTAAATA  50

seq1  ATTGCTTAAATAAATGTTTTGTAATATTTGTTATATTTTTGTAAAAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTAAATAAATGTTTTGTAATATTTGTTATATTTTTGTAAAAAGTT  100

seq1  ACTATCTTTAAACTTGAATTTATGACATTAAGTCTTAAAAGTGAGGCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTTAAACTTGAATTTATGACATTAAGTCTTAAAAGTGAGGCTAG  150

seq1  AGAAGAACTCTGACGTGCTGGTCTTGTACGGAGGGCCTGTTTTCTATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAACTCTGACGTGCTGGTCTTGTACGGAGGGCCTGTTTTCTATGAT  200

seq1  TAGCCTGCACTTAGCAGATATTGAGTATAACACTGTGGAGGAAAAAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTGCACTTAGCAGATATTGAGTATAACACTGTGGAGGAAAAAGAAA  250

seq1  TGAACTATTCTGACAGTGTGTATAAAAGAAACATCAAAAAGCTGTTTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTATTCTGACAGTGTGTATAAAAGAAACATCAAAAAGCTGTTTAGT  300

seq1  TAGCACCAAGGGTTGAAACTGGCTGTCTATAGATTTCTATTGACAAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCAAGGGTTGAAACTGGCTGTCTATAGATTTCTATTGACAAATTT  350

seq1  TCAATGACACAGGGAGAGATGGTTTAGAATTGAAATATGTTCTCTTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGACACAGGGAGAGATGGTTTAGAATTGAAATATGTTCTCTTCCTA  400

seq1  GTGGAGACCCAGGGTCTGATCAGAGTCACTCAATGTGAGGAAAACAGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGACCCAGGGTCTGATCAGAGTCACTCAATGTGAGGAAAACAGAGA  450

seq1  TGACTGCAACACAAAATTGGGAGTCTTGAGAATATATCTAGAGATTTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCAACACAAAATTGGGAGTCTTGAGAATATATCTAGAGATTTGTT  500

seq1  AGGAATATAAATCACCATTGTCTTTACACTAACTACTGTTTATTTCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATAAATCACCATTGTCTTTACACTAACTACTGTTTATTTCAGTC  550

seq1  TACATTCATTCACAATCTTTCAACTTCATAATATCCCTGTTATAAAGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCATTCACAATCTTTCAACTTCATAATATCCCTGTTATAAAGAGC  600

seq1  GAATCACACAAATATGATTCCTTCAAATGAGGTCACAAGAGTTAAACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCACACAAATATGATTCCTTCAAATGAGGTCACAAGAGTTAAACTGT  650

seq1  CTGGGATACCCTACCTGTTCTATTACAGAATTTGTTCCTGTATAGCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATACCCTACCTGTTCTATTACAGAATTTGTTCCTGTATAGCTGTA  700

seq1  GTGGGGAATAAAATTTTTCCACTGTGAATATGCAGGTAATGGTTACATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAATAAAATTTTTCCACTGTGAATATGCAGGTAATGGTTACATTG  750

seq1  CCATAACACATAGTGTGAGAGATGGGTGACTTTCTGTATTTTTGGTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAACACATAGTGTGAGAGATGGGTGACTTTCTGTATTTTTGGTATTT  800

seq1  ACAAATTCAATGATTATTTGTAGTAAGTAATACACATCTTCAGTTGATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCAATGATTATTTGTAGTAAGTAATACACATCTTCAGTTGATAA  850

seq1  TATAGAGACATTAAATAATACTCTTAATTGTTCACTTATTATTTCTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAGACATTAAATAATACTCTTAATTGTTCACTTATTATTTCTTAAA  900

seq1  TGTTTTCTTGAAAACATTCCTAGATAATTTTATTTTAGTTAAAATATAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTTGAAAACATTCCTAGATAATTTTATTTTAGTTAAAATATAAT  950

seq1  TATATCATTGCCCCTTTCCTTTCCTTCCTTTACCCTCCCCATGTTTGTTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCATTGCCCCTTTCCTTTCCTTCCTTTACCCTCCCCATGTTTGTTC  1000

seq1  CACTTAATTATCCCCCAAAACCCAAATTAATGGCTTTTAATGTTATGATC  1050
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  CACTTAATTATCCCCCAAAACCCAA--TAATGGCTTTTAATGTTATGATC  1048

seq1  ATGGTTGTG-ATATATAT-ATATATATACATATATATAT---------  1087
      |||| |||| ||| |||| ||||||||||| ||||||||         
seq2  ATGG-TGTGAATAAATATAATATATATACA-ATATATATTATATATAT  1094

seq1: chr13_27480998_27482111
seq2: B6Ng01-222G19.g_67_1171 (reverse)

seq1  GTCTTTTTTACTTTGAAATTAATAGCTTTGCAAAATGTTTTAGACTATTT  50
      ||||||||||| |||||    |||||||||| ||||||||||||||||||
seq2  GTCTTTTTTACCTTGAA---TATAGCTTTGC-AAATGTTTTAGACTATTT  46

seq1  TCCTCAATTTGCTGCTTGCAATAAGCCAATGAATTGGCTTGGGAACATAG  100
      | ||| ||||||||| ||| |||||||||||| ||||| |||||||||||
seq2  T-CTC-ATTTGCTGC-TGC-ATAAGCCAATGATTTGGC-TGGGAACATAG  91

seq1  TTA-TAATGAAAACATAAAGAATA-TATAAGCCATATGTGCACCTTCTGT  148
      ||| ||||| |||||||||||||| ||||||||||||||||| |||||||
seq2  TTATTAATG-AAACATAAAGAATATTATAAGCCATATGTGCA-CTTCTGT  139

seq1  AATTATTTTATACCACCATTATTAGCATTTTCAGAATGCAAGGCACCAAC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTTATACCACCATTATTAGCATTTTCAGAATGCAAGGCACCAAC  189

seq1  ACTGAGGATTTTGCCCCTCATCTGATGATCTGTGTTGGCAAGAGTTGTAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGATTTTGCCCCTCATCTGATGATCTGTGTTGGCAAGAGTTGTAA  239

seq1  ATCCATGTAAAAAAACAGATATTGTCTATGGTGACTGGTCACTGGTCCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGTAAAAAAACAGATATTGTCTATGGTGACTGGTCACTGGTCCCA  289

seq1  GAAATGTGATTTTATCTACTTTCTCTGTTCTATATAGCACAAGCCTTTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGATTTTATCTACTTTCTCTGTTCTATATAGCACAAGCCTTTAA  339

seq1  ATGATTTTTCCAATGACAAGTGTTGGCTTCATCAACTTTCTTTTCATACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTTCCAATGACAAGTGTTGGCTTCATCAACTTTCTTTTCATACA  389

seq1  TGCTTTACATGAAGAAAACCAGAACAGAACTTTAACATATCAATAGTTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTACATGAAGAAAACCAGAACAGAACTTTAACATATCAATAGTTTA  439

seq1  CAACAGGGTGACATGTCATGCAATCATCAAATTAAAATTCTACTTACCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGGGTGACATGTCATGCAATCATCAAATTAAAATTCTACTTACCTT  489

seq1  ATACACACAAGTCTGGCACAAAAGATGTTATAAAATGTTATTCTCAGGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACAAGTCTGGCACAAAAGATGTTATAAAATGTTATTCTCAGGAA  539

seq1  TCTATATTTCAATAGAACTCTTTTTAATATTAGTGGTAGTGTCCAACACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTTCAATAGAACTCTTTTTAATATTAGTGGTAGTGTCCAACACA  589

seq1  AACTTAGGAAACTGAGAGGAGGAATGAATGGCAAACATCTACACCCAATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAGGAAACTGAGAGGAGGAATGAATGGCAAACATCTACACCCAATT  639

seq1  ATTTAAAATATCTAAATATGCCAAAAAGCTGTGTAAAATACAAATAAGCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATATCTAAATATGCCAAAAAGCTGTGTAAAATACAAATAAGCA  689

seq1  CTAATTTTATTTGAAAATAAAAATGCTGTCAAATAATTCATATCACTAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTTATTTGAAAATAAAAATGCTGTCAAATAATTCATATCACTAAT  739

seq1  ACATCTTTGAAAATACTCCTGAAGTCTTAAGTTTATTTTATGTGTAATGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTTGAAAATACTCCTGAAGTCTTAAGTTTATTTTATGTGTAATGT  789

seq1  ACATATATATTAAATTATGTATATGTACCCTTCATTAATTAATCAACTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATTAAATTATGTATATGTACCCTTCATTAATTAATCAACTGA  839

seq1  AGGATTTTCATAGTCCTATAAGAAAGAAAGAATGCTCACTATTTGGTTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTCATAGTCCTATAAGAAAGAAAGAATGCTCACTATTTGGTTTT  889

seq1  TATTTTCATAAAATCAAATTTACTGTTGTTACTAATTCATATTTCTTAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCATAAAATCAAATTTACTGTTGTTACTAATTCATATTTCTTAAA  939

seq1  ACATTACTAAGAAAATAGAAGCAAGTTAGCAGTAGTGGGAAATTTTACAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTACTAAGAAAATAGAAGCAAGTTAGCAGTAGTGGGAAATTTTACAC  989

seq1  CTTTATTTTACTTGAACAAAGTTGTTAAAGTTCTATATTACCCACATCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTACTTGAACAAAGTTGTTAAAGTTCTATATTACCCACATCTG  1039

seq1  CAATGCTTGTATACATTTCTCTACAGGAATGACAGTTTGGATGCATTCAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTTGTATACATTTCTCTACAGGAATGACAGTTTGGATGCATTCAT  1089

seq1  TCAAGTCAAAGAATTC  1114
      ||||||||||||||||
seq2  TCAAGTCAAAGAATTC  1105