BAC Information

Click to search

BAC

Clone NameB6Ng01-223A05
Chromosome13 (Build37)
Map Location 46,051,198 - 46,219,252
singlet/doubletdoublet
Overlap geneAtxn1, 5033430I15Rik
Upstream geneDtnbp1, Hsp25-ps1, LOC100039502, LOC667204, LOC100039533, Mylip, Gmpr
Downstream geneENSMUSG00000062282, Gm1574, Rbm24, Cap2, C78339, Nup153, Kif13a, LOC544928, Nhlrc1, Tpmt, Aof1, Dek, LOC100039761, Ibrdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223A05.bB6Ng01-223A05.g
ACCGA037874GA037875
length780858
definitionB6Ng01-223A05.b B6Ng01-223A05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,218,474 - 46,219,252)(46,051,198 - 46,052,055)
sequence
gaattcaatcatcaagctccttgcagatttccactacagacctcatccaa
acgcttctgtcagccacagaaacctgctctgtggagaactgtttgtctga
ttaatgactagtgttaagtccaatagaacctgctgatgttagtgtctggg
cacagttattgctattagtgaatcaagacctgtttgcctctgccagatcc
aaacagacatttataacagatggaaaagagcctccagccatagaactggt
ctctctggtctagcaagatggctcagcagttaaaagtgcttgcaaacgaa
gcttgatgacgggagtttgatccctgctacccacatggtgaaagaaaagg
actaacttccacaagttgtcttctgatctctgaaaacatcattgtcagct
tcatcaagctttcaaacacacacacacacacacacacacacacacacaca
cagagagagagagagagagagagagagagagagagagagagagagagagt
aaataaataagaagacataattttaaaatttaagagaaaatggtagtccc
ctagggaatgccaatcctgctaaaaaaaaaaaaaaaagcttctagaaaga
aaaattatagttcctcctccagtcccacaaggggaacaagagcccaggtg
caacagatgctcagatgagctcttgaaaaatttactgctttttataacct
aggcctatcagttcttaactgaagaaggtacctacaatggctcaaaatgc
actgtgggtagtgtatagttgtggtgtgtg
gaattccattctctctggatttcacagaaaggcagaggcctcctgtctgc
tctttaacagagaaccatgagtcaacagtccttgcttacccactgtttca
aggctctctcagccagaaaaatttactgtatgtgaggaaatcaggaagtt
gtaaaatccaaacagacacaaacaaacccaagactcaacaactcttggtt
gccgctgacccaacaaactgttctctgtttccctgaaaatgtagcttgct
atagtgagaaccttaaaaacgtgagaactgacactcaaggcagctagcag
cttagtgttctttacctaaaataatcagggagaagccccagtcagcaatc
attgatcctcacaaatttgatgcagatttcttcccaaaccatagaccaca
actacagatagtttcatccaagtttaacaacacagaggcacacacacaca
cacacacacacacacacacacacacacacacacacacccctgggcaattt
tccatacactatagtttcaaaggaaattatatttcacagttaacagagta
cacgtctagagagcaaccatcccaagtcagactttatcctcagatggaaa
aaagaaaaacattgtaaaactctcacctgacaggtgacgcccttccctgt
ggagggagtggaggaagagactgttggataaggatgacagacagatctgc
agcttgaagcgaccgccctcgtacttgttgcacggtgcaggatacttcta
tgaaggtccaggaagtgcagaagaaatacaagatggaggacccaaaacta
tgagagagagagagagagagagagagagagaagagagagagagagagaga
gagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_46218474_46219252
seq2: B6Ng01-223A05.b_46_825 (reverse)

seq1  CACACACCAC-ACTATACACTACCCACAGTGCATTTTGAGCCATTGTAGG  49
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACACACCACAACTATACACTACCCACAGTGCATTTTGAGCCATTGTAGG  50

seq1  TACCTTCTTCAGTTAAGAACTGATAGGCCTAGGTTATAAAAAGCAGTAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTCTTCAGTTAAGAACTGATAGGCCTAGGTTATAAAAAGCAGTAAA  100

seq1  TTTTTCAAGAGCTCATCTGAGCATCTGTTGCACCTGGGCTCTTGTTCCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAGAGCTCATCTGAGCATCTGTTGCACCTGGGCTCTTGTTCCCC  150

seq1  TTGTGGGACTGGAGGAGGAACTATAATTTTTCTTTCTAGAAGCTTTTTTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGACTGGAGGAGGAACTATAATTTTTCTTTCTAGAAGCTTTTTTT  200

seq1  TTTTTTTTTAGCAGGATTGGCATTCCCTAGGGGACTACCATTTTCTCTTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTAGCAGGATTGGCATTCCCTAGGGGACTACCATTTTCTCTTA  250

seq1  AATTTTAAAATTATGTCTTCTTATTTATTTACTCTCTCTCTCTCTCTCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAAAATTATGTCTTCTTATTTATTTACTCTCTCTCTCTCTCTCTC  300

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTG  350

seq1  TGTGTGTGTGTGTGTTTGAAAGCTTGATGAAGCTGACAATGATGTTTTCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTTTGAAAGCTTGATGAAGCTGACAATGATGTTTTCA  400

seq1  GAGATCAGAAGACAACTTGTGGAAGTTAGTCCTTTTCTTTCACCATGTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCAGAAGACAACTTGTGGAAGTTAGTCCTTTTCTTTCACCATGTGG  450

seq1  GTAGCAGGGATCAAACTCCCGTCATCAAGCTTCGTTTGCAAGCACTTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAGGGATCAAACTCCCGTCATCAAGCTTCGTTTGCAAGCACTTTTA  500

seq1  ACTGCTGAGCCATCTTGCTAGACCAGAGAGACCAGTTCTATGGCTGGAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGAGCCATCTTGCTAGACCAGAGAGACCAGTTCTATGGCTGGAGG  550

seq1  CTCTTTTCCATCTGTTATAAATGTCTGTTTGGATCTGGCAGAGGCAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCCATCTGTTATAAATGTCTGTTTGGATCTGGCAGAGGCAAACA  600

seq1  GGTCTTGATTCACTAATAGCAATAACTGTGCCCAGACACTAACATCAGCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGATTCACTAATAGCAATAACTGTGCCCAGACACTAACATCAGCA  650

seq1  GGTTCTATTGGACTTAACACTAGTCATTAATCAGACAAACAGTTCTCCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTATTGGACTTAACACTAGTCATTAATCAGACAAACAGTTCTCCAC  700

seq1  AGAGCAGGTTTCTGTGGCTGACAGAAGCGTTTGGATGAGGTCTGTAGTGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGTTTCTGTGGCTGACAGAAGCGTTTGGATGAGGTCTGTAGTGG  750

seq1  AAATCTGCAAGGAGCTTGATGATTGAATTC  779
      ||||||||||||||||||||||||||||||
seq2  AAATCTGCAAGGAGCTTGATGATTGAATTC  780

seq1: chr13_46051198_46052055
seq2: B6Ng01-223A05.g_66_923

seq1  GAATTCCATTCTCTCTGGATTTCACAGAAAGGCAGAGGCCTCCTGTCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTCTCTGGATTTCACAGAAAGGCAGAGGCCTCCTGTCTGC  50

seq1  TCTTTAACAGAGAACCATGAGTCAACAGTCCTTGCTTACCCACTGTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAACAGAGAACCATGAGTCAACAGTCCTTGCTTACCCACTGTTTCA  100

seq1  AGGCTCTCTCAGCCAGAAAAATTTACTGTATGTGAGGAAATCAGGAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTCTCAGCCAGAAAAATTTACTGTATGTGAGGAAATCAGGAAGTT  150

seq1  GTAAAATCCAAACAGACACAAACAAACCCAAGACTCAACAACTCTTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATCCAAACAGACACAAACAAACCCAAGACTCAACAACTCTTGGTT  200

seq1  GCCGCTGACCCAACAAACTGTTCTCTGTTTCCCTGAAAATGTAGCTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTGACCCAACAAACTGTTCTCTGTTTCCCTGAAAATGTAGCTTGCT  250

seq1  ATAGTGAGAACCTTAAAAACGTGAGAACTGACACTCAAGGCAGCTAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAGAACCTTAAAAACGTGAGAACTGACACTCAAGGCAGCTAGCAG  300

seq1  CTTAGTGTTCTTTACCTAAAATAATCAGGGAGAAGCCCCAGTCAGCAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGTTCTTTACCTAAAATAATCAGGGAGAAGCCCCAGTCAGCAATC  350

seq1  ATTGATCCTCACAAATTTGATGCAGATTTCTTCCCAAACCATAGACCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATCCTCACAAATTTGATGCAGATTTCTTCCCAAACCATAGACCACA  400

seq1  ACTACAGATAGTTTCATCCAAGTTTAACAACACAGAGGCACACACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGATAGTTTCATCCAAGTTTAACAACACAGAGGCACACACACACA  450

seq1  CACACACACACACACACACACACACACACACACACACCCCTGGGCAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACCCCTGGGCAATTT  500

seq1  TCCATACACTATAGTTTCAAAGGAAATTATATTTCACAGTTAACAGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACACTATAGTTTCAAAGGAAATTATATTTCACAGTTAACAGAGTA  550

seq1  CACGTCTAGAGAGCAACCATCCCAAGTCAGACTTTATCCTCAGATGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCTAGAGAGCAACCATCCCAAGTCAGACTTTATCCTCAGATGGAAA  600

seq1  AAAGAAAAACATTGTAAAACTCTCACCTGACAGGTGACGCCCTTCCCTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAACATTGTAAAACTCTCACCTGACAGGTGACGCCCTTCCCTGT  650

seq1  GGAGGGAGTGGAGGAAGAGACTGTTGGATAAGGATGACAGACAGATCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGTGGAGGAAGAGACTGTTGGATAAGGATGACAGACAGATCTGC  700

seq1  AGCTTGAAGCGACCGCCCTCGTACTTGTTGCACGGTGCAGGATACTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGAAGCGACCGCCCTCGTACTTGTTGCACGGTGCAGGATACTTCTA  750

seq1  TGAAGGTCCAGGAAGTGCAGAAGAAATACAAGATGGAGGACCAAAAAC-A  799
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  TGAAGGTCCAGGAAGTGCAGAAGAAATACAAGATGGAGGACCCAAAACTA  800

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  849
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA-AGAGAGAGAGAGAGAGAG  849

seq1  AGAGAGAGA  858
      |||||||||
seq2  AGAGAGAGA  858