BAC Information

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BAC

Clone NameB6Ng01-224M24
Chromosome13 (Build37)
Map Location 101,661,112 - 101,661,718
singlet/doubletsinglet
Overlap genenone
Upstream geneCartpt, Mccc2, Bdp1, Serf1, Smn1, Naip2, Birc1-rs1, Naip5, Birc1c-ps1, Birc1f, EG667838, Naip1, Gtf2h2, Ocln, LOC667861, Marveld2, Rad17, Taf9, Ccdc125, Cdk7, Mrps36, Cenph, Ccnb1, Slc30a5
Downstream geneLOC619865, LOC619917, EG619937, 4933416M06Rik, LOC100039971, LOC100039983, Pik3r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-224M24.bB6Ng01-224M24.g
ACCGA039167GA039168
length1,2111,030
definitionB6Ng01-224M24.b B6Ng01-224M24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggccaatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattccaacagagaactcctaaaac
tgataaacagcttcggtgaagtagctggatataaaattaactcaaacaag
tcaatggcctttctctacacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagccacaaataatataaaatatctcggcg
tgactctaacgaaggaagtgaaagatctgtatgataaaaacttcaagtcc
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggaccaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccattaaaattccaactcaattcttc
aacgaattagaaggagcaatttgcaaattcatctggaataacaaaaaacc
gaggatagcaaaaactcttctcaaggataaaagaacctctggtggaatca
ccatgcctgacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacaagtggaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ccaaaaccatccagtggaagaaaagacagcattttcaaacaattggtgct
ggcacactgggttgttatcatgtagaagaatgcgaatcgatccatactta
tctccttgtactaaaggtcaaattctaagtggatcaaggaaacttcaaaa
taaaacaggagaaacttgaaacttaataagaagggaagaaagtggggaaa
gcttgaagaatatattggctcatggaaaaattccttgaacgaacagcaat
ggccttgtgcctgtaagaaatccgagaaactggacaaattggggaaccta
tagtgaaacac
gaattctcaggactcactgagagatggctcagcagttaagagtgcatact
gctcttgcagaggaccagagttaagttcctgaacttatgtgaggtaggtc
acaacctaacaccagctcccgaggatctaatgtgttctggcctcctcagg
aaaccatgtttacaaacacctccccccttacatataattaagatgctaaa
ataagggactggagagatgatggctcagtcgttcagcgcattggttgcta
ttctagaggactcaggtttgattcccagcacccacatagtggttcacaaa
catttacagtttcacttctaggagataccacacccttttctggtctctgc
tatcaccaggcacacaaatggtgcacagacattgtctagtcagggttctc
tagagtcacagagcttatggagagtctctatatagtaaaggaatttactg
atgacttacagtctgcagtccgattcccaacaatggttcagtagtagctg
tgaatggaagtgcaaggatctagcagttactcagtcccacacgacaagca
ggcgaaagaatgagagtgagactcccttctttcaatgtccttatatggtc
tccagtagaaggtgtagctcagattaaaggtgtgtgccaccacatcttta
atcccagaagaccttgaactcggagatctccctgtcttaatcttctggaa
tccatagccactatgcctcaagatctccataccaagatccagaccagaaa
cttctatctcccagccttcagataagggtcactggtgagccttccaattc
tggattgtagttcattccaaaatatagtcaagttgacaaccaggaatagc
cactacagacatgcatgcaagcaaaatatccatacatataaaataaaaaa
acatttgttacacaagctttaattaagaaaaaaagaaaggattattgata
ttatgaaatcatttataggataggatattgttgatttggagacaagttga
gcttagacaccattttatttgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_101661112_101661718
seq2: B6Ng01-224M24.g_493_1097

seq1  CTCTATATAGTAAAGGAATTTACTGATGACTTACAGTCTGCAGTCCGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATATAGTAAAGGAATTTACTGATGACTTACAGTCTGCAGTCCGATT  50

seq1  CCCAACAATGGTTCAGTAGTAGCTGTGAATGGAAGTGCAAGGATCTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAATGGTTCAGTAGTAGCTGTGAATGGAAGTGCAAGGATCTAGCA  100

seq1  GTTACTCAGTCCCACACGACAAGCAGGCGAAAGAATGAGAGTGAGACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTCAGTCCCACACGACAAGCAGGCGAAAGAATGAGAGTGAGACTCC  150

seq1  CTTCTTTCAATGTCCTTATATGGTCTCCAGTAGAAGGTGTAGCTCAGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCAATGTCCTTATATGGTCTCCAGTAGAAGGTGTAGCTCAGATT  200

seq1  AAAGGTGTGTGCCACCACATCTTTAATCCCAGAAGACCTTGAACTCGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGTGCCACCACATCTTTAATCCCAGAAGACCTTGAACTCGGAG  250

seq1  ATCTCCCTGTCTTAATCTTCTGGAATCCATAGCCACTATGCCTCAAGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTGTCTTAATCTTCTGGAATCCATAGCCACTATGCCTCAAGATC  300

seq1  TCCATACCAAGATCCAGACCAGAAACTTCTATCTCCCAGCCTTCAGATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATACCAAGATCCAGACCAGAAACTTCTATCTCCCAGCCTTCAGATAA  350

seq1  GGGTCACTGGTGAGCCTTCCAATTCTGGATTGTAGTTCATTCC-AAATAT  399
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGTCACTGGTGAGCCTTCCAATTCTGGATTGTAGTTCATTCCAAAATAT  400

seq1  AGTCAAGTTGACAACCAGGAATAGCCACTACAGACATGCATGCAAGCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAAGTTGACAACCAGGAATAGCCACTACAGACATGCATGCAAGCAAA  450

seq1  ATATCCATACATATAAAATAAAAAAACA-TTGTTACACAAAGCTAAAATA  498
      |||||||||||||||||||||||||||| ||||||||| |||||  ||| 
seq2  ATATCCATACATATAAAATAAAAAAACATTTGTTACAC-AAGCTTTAATT  499

seq1  AAGAAAAAAAGAAAAGAATTATTGATA-TATGAAATCATTTATAGGAATA  547
      ||||||||||| |||| |||||||||| |||||||||||||||||| |||
seq2  AAGAAAAAAAG-AAAGGATTATTGATATTATGAAATCATTTATAGG-ATA  547

seq1  GGAATATGTTGATTTTGGAGACAAAGTTTGAGCTTAGACA-CATTTTATT  596
      |||   |||||| |||||||||||   ||||||||||||| |||||||||
seq2  GGATATTGTTGA-TTTGGAGACAA--GTTGAGCTTAGACACCATTTTATT  594

seq1  TGGGGGGGGGG  607
      |||||||||||
seq2  TGGGGGGGGGG  605