BAC Information

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BAC

Clone NameB6Ng01-227K24
Chromosome13 (Build37)
Map Location 26,337,738 - 26,338,812
singlet/doubletsinglet
Overlap genenone
Upstream geneNrsn1, Tpi-rs8, LOC214973, LOC666221
Downstream geneLOC100042180, LOC100042191, Hdgfl1, LOC100040939, LOC100040945, LOC100040957, Prl, Prl3d1, Prl3d2, Prl3d3, Prl3c1, Prl3b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227K24.bB6Ng01-227K24.g
ACCGA041295GA041296
length8711,061
definitionB6Ng01-227K24.b B6Ng01-227K24.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacatcatagaaatctgaaatggctgatgagcacttaaagaaatg
ttcaaagtccttagtcatcagggaaatgcaaatcaaaatgaccctaagat
tccaccatgcatcaattagaatggctaagatcaaaaattcaggtgacagc
acatgttggggaggatgtggagaaaggaacactcctccattgctagtgga
attgcaaactggcaaacccctgggaaatcaatctggaagtccctcagaaa
attggaagtagatttctacctgaagacccaggtatactactcttaggcat
atacccaaaagatgccccaccataccacaaaggcaagagctccactattc
atagcagccttattcatgatagccagaagctggaaacatgaagaatggat
acagaaaacgtggctcattgacatgatgcaatattattcacatattaaga
acaagaacatcatgagttctgcaggcaaatggttggaactagaaaatata
atcctgaatgacatacttcagactcaaatggacatgcatgatatgtactc
acaaataagtggatattagccaaacaagtacagaatacctaggatacaat
ctgtagaacgtaagaaggataacaagccgaagtgcccaaatgaggatgct
tcaatctcagttggaagggagatgaaaacagtcacaggaggtagacagag
gcaggtacctcagtgggagtgaggaggggaagggaaaagggaaaacatga
tcatgtatgggagtagagacagggccaataggaatgaatggaaatattca
acctcaagagtgggagggtggggttaccataaatctgaaaaggcgatgtt
ctcttatgactcaagggaggt
gaattccttaagattaacaaaccccaggacatacagaaaataacaggaga
tatggccaacaagaccctgttctgagtcaaggtatttttctgttttaatc
accagcaggactactatagtaacaatatgaaatagctggcaggcatagaa
tacaatggctactgctatgatgaggggatctgaccacaacagagtatagg
gtacagtgctgctttgggtcacatattaccaagaatacatccatgccctt
gatatgaaatacagaataacttaccagtgatgacatctactttaatcaac
tgactcaatgaattttctactctgtagttagttttgtgaagtttcagtgc
tgtcctctttagaagaaaatgacacttaaggaaactacagattgctcatt
cagtaattctttatggtagttttctttaaatctttaagttataagatgac
aagtttattattattattatcattattattaccattcctttcgtttacat
ctcaaataatatcccacttccagattacccctctgccaaccccccatccc
acatctgccctccccctcccttttgcctgtatgagagtgctcccacactc
acccacactctcccacaccaccaccccagcacccagcacccctctactct
agggtatcaagcctcctcaggacaaagggcctcccctcccagacaagttt
cttattaaaaacttagtcagtgtcactatttatataaccatcctggcttg
gtggagactgaagagcacatgaacttgataaatcagcttttacagaagaa
atattatttattctgtccttgcaacttctaaatgggccactgaaaagtga
atcaatgaaaaccttggatcgcactgagttttccctcctatcgcatttgc
tccaggcaaacaattctaagcacaagaaaggcaatttaagagcggtcgcc
atcttggtccgggacccgccgaacttagaaattagtctgacagtgagagg
tgcgcagagactgacagcttctggacagcagagcacagagcgctgagcag
cacctttgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_26337738_26338812
seq2: B6Ng01-227K24.g_67_1127 (reverse)

seq1  CCACAAAGGGTGCTGCCTCAGCGCCTCTGTGCTTCTGCCTGTTCCAGAAG  50
      ||||||| ||||||| ||||||| |||||||| |||| ||| ||||||||
seq2  CCACAAA-GGTGCTG-CTCAGCG-CTCTGTGC-TCTG-CTG-TCCAGAAG  44

seq1  CTGTCAGGTTCTCTGGCGCACCCTCTCACCTGTTCAGACTAATTTCCTAA  100
      |||||||  ||||| ||||| ||||||| ||| |||||||||||| ||||
seq2  CTGTCAG--TCTCT-GCGCA-CCTCTCA-CTG-TCAGACTAATTT-CTAA  87

seq1  GTTCGGCGGGTCCCGGACCAAGATGGCGACCGCTCTTAAATTGCCTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGGCGGGTCCCGGACCAAGATGGCGACCGCTCTTAAATTGCCTTTCT  137

seq1  TGTGCTTAGAATTTGTTTGCCTGGAGCAAATGCGATAGGAAGGAAAACTC  200
      ||||||||||| |||||||||||||||||||||||||||| |||||||||
seq2  TGTGCTTAGAA-TTGTTTGCCTGGAGCAAATGCGATAGGAGGGAAAACTC  186

seq1  AGTGCGATCCAAGGTTTTCATTGATTCACTTTTCAGTGGCCCATTTAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGATCCAAGGTTTTCATTGATTCACTTTTCAGTGGCCCATTTAGAA  236

seq1  GTTGCAAGGACAGAATAAATAATATTTCTTCTGTAAAAGCTGATTTATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCAAGGACAGAATAAATAATATTTCTTCTGTAAAAGCTGATTTATCA  286

seq1  AGTTCATGTGCTCTTCAGTCTCCACCAAGCCAGGATGGTTATATAAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGTGCTCTTCAGTCTCCACCAAGCCAGGATGGTTATATAAATAG  336

seq1  TGACACTGACTAAGTTTTTAATAAGAAACTTGTCTGGGAGGGGAGGCCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGACTAAGTTTTTAATAAGAAACTTGTCTGGGAGGGGAGGCCCT  386

seq1  TTGTCCTGAGGAGGCTTGATACCCTAGAGTAGAGGGGTGCTGGGTGCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTGAGGAGGCTTGATACCCTAGAGTAGAGGGGTGCTGGGTGCTGG  436

seq1  GGTGGTGGTGTGGGAGAGTGTGGGTGAGTGTGGGAGCACTCTCATACAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGGTGTGGGAGAGTGTGGGTGAGTGTGGGAGCACTCTCATACAGG  486

seq1  CAAAAGGGAGGGGGAGGGCAGATGTGGGATGGGGGGTTGGCAGAGGGGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGGAGGGGGAGGGCAGATGTGGGATGGGGGGTTGGCAGAGGGGTA  536

seq1  ATCTGGAAGTGGGATATTATTTGAGATGTAAACGAAAGGAATGGTAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGAAGTGGGATATTATTTGAGATGTAAACGAAAGGAATGGTAATAA  586

seq1  TAATGATAATAATAATAATAAACTTGTCATCTTATAACTTAAAGATTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATAATAATAATAATAAACTTGTCATCTTATAACTTAAAGATTTAA  636

seq1  AGAAAACTACCATAAAGAATTACTGAATGAGCAATCTGTAGTTTCCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTACCATAAAGAATTACTGAATGAGCAATCTGTAGTTTCCTTAA  686

seq1  GTGTCATTTTCTTCTAAAGAGGACAGCACTGAAACTTCACAAAACTAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCATTTTCTTCTAAAGAGGACAGCACTGAAACTTCACAAAACTAACT  736

seq1  ACAGAGTAGAAAATTCATTGAGTCAGTTGATTAAAGTAGATGTCATCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGTAGAAAATTCATTGAGTCAGTTGATTAAAGTAGATGTCATCACT  786

seq1  GGTAAGTTATTCTGTATTTCATATCAAGGGCATGGATGTATTCTTGGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTTATTCTGTATTTCATATCAAGGGCATGGATGTATTCTTGGTAA  836

seq1  TATGTGACCCAAAGCAGCACTGTACCCTATACTCTGTTGTGGTCAGATCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGACCCAAAGCAGCACTGTACCCTATACTCTGTTGTGGTCAGATCC  886

seq1  CCTCATCATAGCAGTAGCCATTGTATTCTATGCCTGCCAGCTATTTCATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCATAGCAGTAGCCATTGTATTCTATGCCTGCCAGCTATTTCATA  936

seq1  TTGTTACTATAGTAGTCCTGCTGGTGATTAAAACAGAAAAATACCTTGAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACTATAGTAGTCCTGCTGGTGATTAAAACAGAAAAATACCTTGAC  986

seq1  TCAGAACAGGGTCTTGTTGGCCATATCTCCTGTTATTTTCTGTATGTCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACAGGGTCTTGTTGGCCATATCTCCTGTTATTTTCTGTATGTCCT  1036

seq1  GGGGTTTGTTAATCTTAAGGAATTC  1075
      |||||||||||||||||||||||||
seq2  GGGGTTTGTTAATCTTAAGGAATTC  1061