BAC Information

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BAC

Clone NameB6Ng01-227L04
Chromosome13 (Build37)
Map Location 21,589,393 - 21,590,310
singlet/doubletsinglet
Overlap genenone
Upstream geneElmo1, LOC100040226, LOC665381, LOC665386, Aoah, Olfr1370, Olfr1369-ps1, Olfr42, Olfr1368, Trim27, Gpx5, LOC625752, Gpx6, Olfr1367, Zfp96, LOC665454, Zkscan3, Pgbd1, 4930470G03Rik, Zfp187, 4921504I05Rik, OTTMUSG00000000421, AK157302
Downstream geneLOC100040340, Zfp192, Olfr1366, Olfr1365, Olfr1364, Olfr1362, Olfr1363-ps1, Olfr11, Olfr1361, Olfr1360, Olfr1359, Hist1h2bl, Hist1h2ai, Hist1h3h, Hist1h2aj, Hist1h2bm, Hist1h4j, Hist1h4k, Hist1h2ak, Hist1h2bn, LOC100041150, Hist1h1b, Hist1h3i, Hist1h2an, Hist1h2bp, LOC665596, Rp23-480b19.10, LOC100041230, Hist1h4m, Hist1h2ao, LOC665622, LOC665634, Zfp184, Gm24, Prss16, Hist1h2ah, Hist1h2bk, Hist1h4i, Hist1h2ag, Hist1h2bj, LOC665690, V1rh17, V1rh2, V1ri8, LOC632534, V1ri1, V1ri9, OTTMUSG00000000480, V1ri6, LOC665726, V1rh21, V1ri3, V1rh4, V1rh3, V1rh1, LOC665749, V1ri4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-227L04.bB6Ng01-227L04.g
ACCGA041301GA041302
length1,063924
definitionB6Ng01-227L04.b B6Ng01-227L04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccctgtagcagggggtcttcgctcgtgcctgaagatgtttctt
ttccccggtttttggcaccacttcttgtgcgcgctcaactggccaggaag
aacgatgctacaacaggatccttctgcacacgtttattcagtcctgtttc
ttctttctctatatctcccttgtttatatctcccccgaaccctgggcctc
tcactcttttatactcagttcccatccacgcacaacaggccacaccacct
caccaggcaagcagcttcagctaattagggcagcaggggcatatctccat
caaaatggattcaccagtatcctggtacacctgtgcagctctcaagatgt
ggcttatatgaggaagtcaggtgcaagtcatacgacttagctgcagtccc
tggtgcctttgggactgccgccacacccgctcctcacagggttgtttttg
ttttgtttttttctttgtttttgttttttattttgagggtttttgttttg
tttttctctttgtttgttttatcactattgctctgtaatacagtttgagg
tcagggatggtgattcccccagaagttcttttattgttgagaatagtttt
tgctatcctgggtttttttgttattccatatgaatttgcagattgctctt
tcaaactctataaagaatcgagttgtaattttgatggggattgcattgaa
tctgtagattgctttcggcaagatgtccatttttactatattaatcctgc
caatccatgagcataggagatctttccatcttctgagatcttcaatttct
ttcttcagagacttgaaagttcttatcatacagatctttcacttgcttgg
ttagagtcacaccaaaggtatgtaatattattttgtgactatttgtgaaa
gggttgtcatttccctaattttctttctcagcaatgtctattctttttga
gtagaggaagggctactgatttgttgagttaattttatatttagccactt
gctgaagtgtttatcaggtttagaagttctctgatggaatgcttgggggt
cacctaggtatac
gaattccagagccacaactttgagatgaagggttttttttcttgttattt
tgttttgttttgttttgttttctacttgctcaaggtcacaggaactggag
ttttggtttgtttgtttttttttaacaagctctgtctttggctgctcagt
catcattcttactgaatctgatagaacctagtggagaaaccccccccact
cgattcctgagcacccaaaaaaatcacgaaggaccattttgatgtaacta
cacgaggtagtttaattacagagctctggaccgacatgcatcccacacag
gagataacggatgtcggccacgaggctcgaaagctagggttttttatggg
gtaaggggcttaggggtgtggaattcagcatagcgacacactattggctt
attcaaacatcagcagaaaaattacatatatgtgcagggtgtcagagttc
tgtgagttgttgactcagttcagatagccctgttatgtcttcacattccc
ctttatcttatgatcaagatgttcccaggaatgttttaactacggggcat
acccaggtttgtttttcttttttctcagccccaggcagcctctaagctca
caaacaaccagcaatttctgagtactttatatgacttacaggtgttgaaa
tttcatttttcttccaaatcccgagtatctggtgaacactgaaatatcag
gtactagaatttgaaacataccctctgctttcaaggggggacataaccaa
gttagaatggtttaaggtttgttgaaatacttaaaggctcggtgaaatcc
ccttgaaatagctcatgccttttccccagctctagagaggtataggcaga
aaagacaaattgggaatagaacctgcgggaccctagtggctggatggggt
ggtttcctccgggtgtcgcctggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_21589393_21590310
seq2: B6Ng01-227L04.g_66_989

seq1  GAATTCCAGAGCCACAACTTTGAGATGAAGGGTTTTTTTTCTTGTTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGCCACAACTTTGAGATGAAGGGTTTTTTTTCTTGTTATTT  50

seq1  TGTTTTGTTTTGTTTTGTTTTCTACTTGCTCAAGGTCACAGGAACTGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTGTTTTCTACTTGCTCAAGGTCACAGGAACTGGAG  100

seq1  TTTTGGTTTGTTTGTTTTTTTTTAACAAGCTCTGTCTTTGGCTGCTCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTGTTTGTTTTTTTTTAACAAGCTCTGTCTTTGGCTGCTCAGT  150

seq1  CATCATTCTTACTGAATCTGATAGAACCTAGTGGAGAAACCCCCCCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCTTACTGAATCTGATAGAACCTAGTGGAGAAACCCCCCCCACT  200

seq1  CGATTCCTGAGCACCCAAAAAAATCACGAAGGACCATTTTGATGTAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTCCTGAGCACCCAAAAAAATCACGAAGGACCATTTTGATGTAACTA  250

seq1  CACGAGGTAGTTTAATTACAGAGCTCTGGACCGACATGCATCCCACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGTAGTTTAATTACAGAGCTCTGGACCGACATGCATCCCACACAG  300

seq1  GAGATAACGGATGTCGGCCACGAGGCTCGAAAGCTAGGGTTTTTTATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAACGGATGTCGGCCACGAGGCTCGAAAGCTAGGGTTTTTTATGGG  350

seq1  GTAAGGGGCTTAGGGGTGTGGAATTCAGCATAGCGACACACTATTGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGGCTTAGGGGTGTGGAATTCAGCATAGCGACACACTATTGGCTT  400

seq1  ATTCAAACATCAGCAGAAAAATTACATATATGTGCAGGGTGTCAGAGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAACATCAGCAGAAAAATTACATATATGTGCAGGGTGTCAGAGTTC  450

seq1  TGTGAGTTGTTGACTCAGTTCAGATAGCCCTGTTATGTCTTCACATTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTGTTGACTCAGTTCAGATAGCCCTGTTATGTCTTCACATTCCC  500

seq1  CTTTATCTTATGATCAAGATGTTCCCAGGAATGTTTTAACTACGGGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCTTATGATCAAGATGTTCCCAGGAATGTTTTAACTACGGGGCAT  550

seq1  ACCCAGGTTTGTTTTTCTTTTTTCTCAGCCCCAGGCAGCCTCTAAGCTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGTTTGTTTTTCTTTTTTCTCAGCCCCAGGCAGCCTCTAAGCTCA  600

seq1  CAAACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTGTTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAACCAGCAATTTCTGAGTACTTTATATGACTTACAGGTGTTGAAA  650

seq1  TTTCATTTTTCTTCCAAATCCCGAGTATCTGGTGAACACTGAAATATCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTTCTTCCAAATCCCGAGTATCTGGTGAACACTGAAATATCAG  700

seq1  GTACTAGAATTTGAAACATACCCTCTGCTTTCAA-GGGGGACATAACCAA  749
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GTACTAGAATTTGAAACATACCCTCTGCTTTCAAGGGGGGACATAACCAA  750

seq1  GTTAGAATGGTTTAAGGTTTGTTGAAATACTT-AAGGCTCGGTGAAAT-C  797
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  GTTAGAATGGTTTAAGGTTTGTTGAAATACTTAAAGGCTCGGTGAAATCC  800

seq1  CCTTGAAATAGCTCATGCCTTTTCCCCAGCTCTAGAGAGGTATAGGCAG-  846
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTTGAAATAGCTCATGCCTTTTCCCCAGCTCTAGAGAGGTATAGGCAGA  850

seq1  AAAGACAAATT-GGAATAGAACCTGCGGGACCCTAGT-GCTGGATGGGGT  894
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  AAAGACAAATTGGGAATAGAACCTGCGGGACCCTAGTGGCTGGATGGGGT  900

seq1  GGTTTTCTCAGGGTGTCGCCTGGG  918
      ||||| ||| ||||||||||||||
seq2  GGTTTCCTCCGGGTGTCGCCTGGG  924