BAC Information

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BAC

Clone NameB6Ng01-228D05
Chromosome13 (Build37)
Map Location 114,206,167 - 114,207,367
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040725, Il6st, Il31ra, LOC100041240, Ddx4, 9130023D20Rik, Ppap2a, LOC100041282, Skiv2l2, Dhx29, LOC667756, Ccnu, EG622408, EG622422, 2310016C16Rik, Cdc20b, Gzma, 1700084D21Rik, Gzmk, Esm1, BC067074
Downstream geneLOC100040888, Snag1, Hspb3, EG632832, LOC622701, LOC100040927, Arl15, A430090L17Rik, Ndufs4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-228D05.bB6Ng01-228D05.g
ACCGA041669GA041670
length1,2021,223
definitionB6Ng01-228D05.b B6Ng01-228D05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactgtgcaaacctgcctgggtctaggcctcttacaacatcatct
agcgtgaagtgatctgaggatggccccggggcacagtatagcatgtggca
tcactcagtgtgggcaggatggagaacttctgtgtgtcggaagtaaatga
agcttccgtgaaaggatattctttgatactaattttatttattatcctat
taactcaaatattcatacatatgctgtataatggattatatatatgtgtg
tatatgtatgattacatttgtatgtttatatatgtgcatatatgtgtata
tatacatccctttccccacttcaatgaagtatagtaacattatttattga
caccttttattaaactaacatcataagaccccatggattctttgacacaa
tctctttttcaatcagtttgggtcaaaacacattttctgatctgttcaaa
ggcaacgtggacacagtggttaatgccattaagtaagctgtttcattatt
ggcttctctacaactctcatcaggaccttcacttactctatagagtcact
ggaaatatgtattgaaccactgagaaaaagcagccatcttggtctctcct
gatctcagctcttcaagctagtgctgaaggtccctccagaggcccacaag
tcctcagcctgtggtgctactgggtggaacctttactaggcagtgcctaa
tagaagtaagtcgagtcactgagtgtgagttcttgaaggagatactagaa
ccccatttctgtccccagcatgtacaagcttactccccagcttgtaaagc
tattttggggaggtcatgtagccatttaggagctggcaatgtagttcact
agaggtagatttttttgagggtatagcctaggccttgtttctatctagct
ctctctgtcttctgatcagccaccatgttaacacgatgctactccatgct
cccactaccaaagatgagcctacccacccccatgacagactgttgttgtg
tatactttttaaaacctacttaataaggtttccttaccttccttctagcc
catcacctaccagaggtagttgaaaggaagattagttagaaacgggtaag
taaaccctggtttagaaatgtctttgggggtctattctagtcttgttgtt
agccagtccaagttccttctagtaatcctaccaagtcagccagctgtcag
tc
gaattcctacccagaaacatgaactacgtctctatttcttaagttaaaaa
ttatctcatccacatttcatagctctgctcatacagatcttgagcatatt
tttgctagatttatatctgtttctgtgggagaatggaaatgtgaaaggca
gtgtgtttttaattcagattctatttgctcaaggccagtgggtaggaaaa
agattgagttctgtattttgcaatcttgacgtaatgggtcattagctcta
ctctctgttgatgcgtctcaactttctacataggtgatcgtgtactgtat
gaataatgccagttttatccttccttcatttcatttcctaatttacttcc
ttttctaggatttctggtacaaatgtcgagaagcaggaatggcagggaca
ctcttacattgctcctggtctttgccgaaagcttctattttctctgtatt
aaatatgatattagctttagggttcttgcagatattatttaccaaatatg
aaagctcttctctatccatagcttgctaaggtttttgatatgagtctgta
ttgaagcatgtcaagtgctttatttgtatatattgatatgatcatgtgtt
ttccttctttgtcagtgtgataaattacattgatttttgaatgtcaaatt
acctttcatactcaggataaaacccacttggtcatggggtctaatctttt
tatatgttgttggaatttgaaatgctttttaataaaatcattttatatgt
tttttatatatttgcattcatgagaactattggtctataattttgttttc
ccattttggcattaggacaatgcttcagttcataggaaaaattaagaaaa
tactccctctgcttttgtcttctgcaagagttggagacaatttagtatat
ttttttttccttagtgtttggacccgtgagggccttggtgtttttctgtt
tgggaaaggtcattcattcattgtttgattcaacttcttgagcagataga
ggcttgctctgattgtcgtttcttcttgtctgacttttggcaggttgcct
ctttcattgatttggttatgaaggtctgtagacacagcattcatagtctc
tcctctgcatccttccaattataggacacggaggtgttatccccctcctc
attctggaagttagccaatttatggtccaattggcttttcttagcccata
tataaaaggagccttcatattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_114206167_114207367
seq2: B6Ng01-228D05.b_44_1245

seq1  GAATTCACTGTGCAAACCTGCCTGGGTCTAGGCCTCTTACAACATCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTGCAAACCTGCCTGGGTCTAGGCCTCTTACAACATCATCT  50

seq1  AGCGTGAAGTGATCTGAGGATGGCCCCGGGGCACAGTATAGCATGTGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGAAGTGATCTGAGGATGGCCCCGGGGCACAGTATAGCATGTGGCA  100

seq1  TCACTCAGTGTGGGCAGGATGGAGAACTTCTGTGTGTCGGAAGTAAATGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGTGTGGGCAGGATGGAGAACTTCTGTGTGTCGGAAGTAAATGA  150

seq1  AGCTTCCGTGAAAGGATATTCTTTGATACTAATTTTATTTATTATCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCCGTGAAAGGATATTCTTTGATACTAATTTTATTTATTATCCTAT  200

seq1  TAACTCAAATATTCATACATATGCTGTATAATGGATTATATATATGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAAATATTCATACATATGCTGTATAATGGATTATATATATGTGTG  250

seq1  TATATGTATGATTACATTTGTATGTTTATATATGTGCATATATGTGTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATGATTACATTTGTATGTTTATATATGTGCATATATGTGTATA  300

seq1  TATACATCCCTTTCCCCACTTCAATGAAGTATAGTAACATTATTTATTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATCCCTTTCCCCACTTCAATGAAGTATAGTAACATTATTTATTGA  350

seq1  CACCTTTTATTAAACTAACATCATAAGACCCCATGGATTCTTTGACACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTTATTAAACTAACATCATAAGACCCCATGGATTCTTTGACACAA  400

seq1  TCTCTTTTTCAATCAGTTTGGGTCAAAACACATTTTCTGATCTGTTCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTTCAATCAGTTTGGGTCAAAACACATTTTCTGATCTGTTCAAA  450

seq1  GGCAACGTGGACACAGTGGTTAATGCCATTAAGTAAGCTGTTTCATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACGTGGACACAGTGGTTAATGCCATTAAGTAAGCTGTTTCATTATT  500

seq1  GGCTTCTCTACAACTCTCATCAGGACCTTCACTTACTCTATAGAGTCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTCTACAACTCTCATCAGGACCTTCACTTACTCTATAGAGTCACT  550

seq1  GGAAATATGTATTGAACCACTGAGAAAAAGCAGCCATCTTGGTCTCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATGTATTGAACCACTGAGAAAAAGCAGCCATCTTGGTCTCTCCT  600

seq1  GATCTCAGCTCTTCAAGCTAGTGCTGAAGGTCCCTCCAGAGGCCCACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCAGCTCTTCAAGCTAGTGCTGAAGGTCCCTCCAGAGGCCCACAAG  650

seq1  TCCTCAGCCTGTGGTGCTACTGGGTGGAACCTTTACTAGGCAGTGCCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCCTGTGGTGCTACTGGGTGGAACCTTTACTAGGCAGTGCCTAA  700

seq1  TAGAAGTAAGTCGAGTCACTGAGTGTGAGTTCTTGAAGGAGATACTAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAAGTCGAGTCACTGAGTGTGAGTTCTTGAAGGAGATACTAGAA  750

seq1  CCCCATTTCTGTCCCCAGCATGTACAAGCTTACTCCCCAGCTTGTAAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTCTGTCCCCAGCATGTACAAGCTTACTCCCCAGCTTGTAAAGC  800

seq1  TATTTTGGGGAGGTCATGTAGCCA-TTAGGAGCTGGCAATGTAGTTCACT  849
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TATTTTGGGGAGGTCATGTAGCCATTTAGGAGCTGGCAATGTAGTTCACT  850

seq1  AGAGGTAGATTTTTTTGAGGGTATAGCCTAGGCCTTGTTTCTATCTAGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTAGATTTTTTTGAGGGTATAGCCTAGGCCTTGTTTCTATCTAGCT  900

seq1  CTCTCTGTCTTCTGATCAGCCACCATGTTAACACGATGCTACTCCATGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGTCTTCTGATCAGCCACCATGTTAACACGATGCTACTCCATGCT  950

seq1  CCCACTACCAAAGATGAGCCTACCCA-CCCCATGACAGACTGTTGTTGGT  998
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  CCCACTACCAAAGATGAGCCTACCCACCCCCATGACAGACTGTTGTT-GT  999

seq1  GTATACTTTTTAAAACCTACTTTAATAAGGGTTCCTAACCTCCCTTCTAG  1048
      |||||||||||||||||||| ||||||||| ||||| |||| ||||||||
seq2  GTATACTTTTTAAAACCTAC-TTAATAAGGTTTCCTTACCTTCCTTCTAG  1048

seq1  CCCATCACCCACCAGAGGTAGTTGAAAAGAAAGATTAGTAAGAAACGGGT  1098
      ||||||||| |||||||||||||| |||| ||||||||| ||||||||||
seq2  CCCATCACCTACCAGAGGTAGTTG-AAAGGAAGATTAGTTAGAAACGGGT  1097

seq1  AAAGTAAACC--TGTTTAGAAATAGTTCTTTGGGG--CTATTCTAGTCTT  1144
       |||||||||   ||||||||||   |||||||||  ||||||||||| |
seq2  -AAGTAAACCCTGGTTTAGAAAT--GTCTTTGGGGGTCTATTCTAGTC-T  1143

seq1  TGTTGTTAG-CAGTCC-AGT--CCTCTAGTAAAATACCAACACAAGTCAG  1190
      ||||||||| |||||| |||  | ||||||||    || || ||||||||
seq2  TGTTGTTAGCCAGTCCAAGTTCCTTCTAGTAA---TCCTAC-CAAGTCAG  1189

seq1  -CAGCTG-CAGTC  1201
       |||||| |||||
seq2  CCAGCTGTCAGTC  1202